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  1. Article

    Open Access

    scifi-ATAC-seq: massive-scale single-cell chromatin accessibility sequencing using combinatorial fluidic indexing

    Single-cell ATAC-seq has emerged as a powerful approach for revealing candidate cis-regulatory elements genome-wide at cell-type resolution. However, current single-cell methods suffer from limited throughput ...

    Xuan Zhang, Alexandre P. Marand, Haidong Yan, Robert J. Schmitz in Genome Biology (2024)

  2. Article

    Open Access

    Cold stress induces enhanced chromatin accessibility and bivalent histone modifications H3K4me3 and H3K27me3 of active genes in potato

    Cold stress can greatly affect plant growth and development. Plants have developed special systems to respond to and tolerate cold stress. While plant scientists have discovered numerous genes involved in resp...

    Zixian Zeng, Wenli Zhang, Alexandre P. Marand, Bo Zhu, C. Robin Buell in Genome Biology (2019)

  3. Article

    Open Access

    Meiotic crossovers are associated with open chromatin and enriched with Stowaway transposons in potato

    Meiotic recombination is the foundation for genetic variation in natural and artificial populations of eukaryotes. Although genetic maps have been developed for numerous plant species since the late 1980s, few...

    Alexandre P. Marand, Shelley H. Jansky, Hainan Zhao, Courtney P. Leisner in Genome Biology (2017)