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  1. No Access

    Article

    TGF-β1-Induced LINC01094 promotes epithelial-mesenchymal transition in hepatocellular carcinoma through the miR-122-5p/TGFBR2–SAMD2–SMAD3 Axis

    Hepatocellular carcinoma (HCC) is a common malignancy with a poor prognosis. It has been proven that long non-coding RNAs (lncRNAs) play an essential role in regulating HCC progression. However, the involvemen...

    **aofeng Yang, Cuicui Xu, Chenghao Liu, **angwei Wu in Functional & Integrative Genomics (2024)

  2. No Access

    Article

    CRISPR-Cas9-mediated deletion enhancer of MECOM play a tumor suppressor role in ovarian cancer

    MDS1 and EVI1 complex locus (MECOM), a transcription factor encoding several variants, has been implicated in progression of ovarian cancer. The function of regulatory regions in regulating MECOM expression in...

    Yujie Chen, Qiuwen Jiang, Yingzhuo Xue, Weiguan Chen in Functional & Integrative Genomics (2024)

  3. No Access

    Article

    Exosome theranostics: Comparative analysis of P body and exosome proteins and their mutations for clinical applications

    Exosomes are lipid-bilayered vesicles, originating from early endosomes that capture cellular proteins and genetic materials to form multi-vesicular bodies. These exosomes are secreted into extracellular fluid...

    Greeshma Satheeshan, Ayan Kumar Si, Joel Rutta in Functional & Integrative Genomics (2024)

  4. No Access

    Article

    Circ-IP6K2 suppresses tumor progression by modulating the miR-1292-5p/CAMK2N1 signal in clear cell renal cell carcinoma

    Renal cell carcinoma (RCC) is a malignant tumor originating from the epithelial cells of the renal tubules. The clear cell RCC subtype is closely linked to a poor prognosis due to its rapid progression. Circul...

    Jian-ying Tang, Lu Yang, Qing-Jian Wu, Ying Yang in Functional & Integrative Genomics (2024)

  5. No Access

    Article

    Purifying selection drove the adaptation of mitochondrial genes along with correlation of gene rearrangements and evolutionary rates in two subfamilies of Whitefly (Insecta: Hemiptera)

    Insect mitochondrial genomes (mitogenomes) are usually represented by a conserved gene order. Whiteflies exhibit gene rearrangement in their mitogenomes; however, understanding how nucleotide substitution rate...

    Abhishek Ghosh, Kaomud Tyagi, Anil Kumar Dubey in Functional & Integrative Genomics (2024)

  6. Article

    Open Access

    Publisher Correction: Mechanisms underlying the interactions and adaptability of nitrogen removal microorganisms in freshwater sediments

    Dandan Zhang, Huang Yu, **aoli Yu, Yuchun Yang, Cheng Wang in Advanced Biotechnology (2024)

  7. No Access

    Article

    Sha** Drosophila eggs: unveiling the roles of Arpc1 and cpb in morphogenesis

    The Drosophila egg chamber (EC) starts as a spherical tissue at the beginning. With maturation, the outer follicle cells of EC collectively migrate in a direction perpendicular to the anterior-posterior axis, to ...

    Poulami Chatterjee, Sandipan Mukherjee in Functional & Integrative Genomics (2024)

  8. No Access

    Article

    Comprehensive pan-cancer analysis reveals that C5orf34 regulates the proliferation and mortality of lung cancer

    The gene C5orf34 exhibits evolutionary conservation among mammals, and emerging evidence suggests its potential involvement in tumor development; however, comprehensive investigations of this gene are lacking....

    Meng Yang, Yuhan Deng, Yu Ma, Chunli Song, Zhenhua Wu in Functional & Integrative Genomics (2024)

  9. No Access

    Article

    Integrated multi-omics analysis and machine learning to refine molecular subtypes, prognosis, and immunotherapy in lung adenocarcinoma

    Lung adenocarcinoma (LUAD) has a malignant characteristic that is highly aggressive and prone to metastasis. There is still a lack of suitable biomarkers to facilitate the refinement of precision-based therape...

    Tao Han, Ying Bai, Yafeng Liu, Yunjia Dong, Chao Liang in Functional & Integrative Genomics (2024)

  10. No Access

    Article

    Engineering circular RNA for molecular and metabolic reprogramming

    The role of messenger RNA (mRNA) in biological systems is extremely versatile. However, it’s extremely short half-life poses a fundamental restriction on its application. Moreover, the translation efficiency o...

    Narendra Kumar Sharma, Pragya Dwivedi, Ravi Bhushan in Functional & Integrative Genomics (2024)

  11. No Access

    Article

    Reviving resilience: MEcPP-mediated ASK1-IMPα-9-TRP2 stress-responsive module

    Chloroplasts are not only critical photosynthesis sites in plants, but they also participate in plastidial retrograde signaling in response to developmental and environmental signals. MEcPP (2-C-Methyl-D-eryth...

    Hamza Sohail, Iqra Noor, Xuewen Xu, Rahat Sharif in Functional & Integrative Genomics (2024)

  12. No Access

    Article

    Navigating the intricacies of RT-qPCR data analysis in gene expression studies

    Linah Wetthasinghe, Hien Fuh Ng, Yun Fong Ngeow in Functional & Integrative Genomics (2024)

  13. Article

    Open Access

    Mechanisms underlying the interactions and adaptability of nitrogen removal microorganisms in freshwater sediments

    Microorganisms in eutrophic water play a vital role in nitrogen (N) removal, which contributes significantly to the nutrient cycling and sustainability of eutrophic ecosystems. However, the mechanisms underlyi...

    Dandan Zhang, Huang Yu, **aoli Yu, Yuchun Yang, Cheng Wang in Advanced Biotechnology (2024)

  14. Article

    Open Access

    Pharmacological inhibition of RUNX1 reduces infarct size after acute myocardial infarction in rats and underlying mechanism revealed by proteomics implicates repressed cathepsin levels

    Myocardial infarction (MI) results in prolonged ischemia and the subsequent cell death leads to heart failure which is linked to increased deaths or hospitalizations. New therapeutic targets are urgently neede...

    Hengshu Chen, Si Wang, **aoling Zhang, **ng Hua in Functional & Integrative Genomics (2024)

  15. Article

    Open Access

    Iodine-125 seed inhibits proliferation and promotes apoptosis of cholangiocarcinoma cells by inducing the ROS/p53 axis

    With advances in radioactive particle implantation in clinical practice, Iodine-125 (125I) seed brachytherapy has emerged as a promising treatment for cholangiocarcinoma (CCA), showing good prognosis; however, th...

    Fu** Kang, **g Wu, Li Hong, Peng Zhang in Functional & Integrative Genomics (2024)

  16. Article

    Open Access

    Adenine base editor corrected ADPKD point mutations in hiPSCs and kidney organoids

    Autosomal dominant polycystic kidney disease (ADPKD) is a dominant genetic disorder caused primarily by mutations in the PKD1 gene, resulting in the formation of numerous cysts and eventually kidney failure. Howe...

    **gwen Wang, Yanling Qiu, Lei Zhang, **nyao Zhou, Sihui Hu in Advanced Biotechnology (2024)

  17. No Access

    Article

    Multi-omics analysis reveals mechanism of Schisandra chinensis lignans and acteoside on EMT in hepatoma cells via ERK1/2 pathway

    Hepatocellular carcinoma (HCC), a globally common cancer, often presents late and shows high resistance to chemotherapy, resulting in suboptimal treatment efficacy. Components from traditional Chinese medicine...

    **g**g Jiang, Ru Cheng, Aoqi Song, Yuefen Lou in Functional & Integrative Genomics (2024)

  18. Article

    Open Access

    Acetylation modification in the regulation of macroautophagy

    Macroautophagy, commonly referred to as autophagy, is an evolutionarily conserved cellular process that plays a crucial role in maintaining cellular homeostasis. It orchestrates the delivery of dysfunctional o...

    Li Huang, Hongwei Guo in Advanced Biotechnology (2024)

  19. Article

    Retraction Note: Genetic basis of genome size variation of wheat

    Ming Zhang, Xuebing Qiu in Functional & Integrative Genomics (2024)

  20. No Access

    Article

    The CRISPR/Cas system as an antimicrobial resistance strategy in aquatic ecosystems

    With the growing population, demand for food has dramatically increased, and fisheries, including aquaculture, are expected to play an essential role in sustaining demand with adequate quantities of protein an...

    Sobin Sonu Gupta, Muneeb Hamza KH, Collin L. Sones in Functional & Integrative Genomics (2024)

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