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  1. Article

    Open Access

    Methamphetamine-induced region-specific transcriptomic and epigenetic changes in the brain of male rats

    Psychostimulant methamphetamine (METH) is neurotoxic to the brain and, therefore, its misuse leads to neurological and psychiatric disorders. The gene regulatory network (GRN) response to neurotoxic METH binge...

    Benpeng Miao, **aoyun **ng, Viktoriia Bazylianska, Pamela Madden in Communications Biology (2023)

  2. No Access

    Article

    Superpixel-based foreground-preserving image stitching

    Image stitching aims to stitch multiple images with overlap** areas into a high-resolution image with natural appearance, no ghosting and no seam, so as to obtain a wide field of vision. And the stitching is...

    **npeng Miao, Tao Qu, ** Chen, Chu He in Machine Vision and Applications (2022)

  3. Article

    Open Access

    Common DNA methylation dynamics in endometriod adenocarcinoma and glioblastoma suggest universal epigenomic alterations in tumorigenesis

    Trends in altered DNA methylation have been defined across human cancers, revealing global loss of methylation (hypomethylation) and focal gain of methylation (hypermethylation) as frequent cancer hallmarks. A...

    Jennifer A. Karlow, Benpeng Miao, **aoyun **ng, Ting Wang in Communications Biology (2021)

  4. Article

    Open Access

    Tissue-specific usage of transposable element-derived promoters in mouse development

    Transposable elements (TEs) are a significant component of eukaryotic genomes and play essential roles in genome evolution. Mounting evidence indicates that TEs are highly transcribed in early embryo developme...

    Benpeng Miao, Shuhua Fu, Cheng Lyu, Paul Gontarz, Ting Wang, Bo Zhang in Genome Biology (2020)

  5. Article

    Open Access

    Comparison of differential accessibility analysis strategies for ATAC-seq data

    ATAC-seq is widely used to measure chromatin accessibility and identify open chromatin regions (OCRs). OCRs usually indicate active regulatory elements in the genome and are directly associated with the gene r...

    Paul Gontarz, Shuhua Fu, **aoyun **ng, Shaopeng Liu, Benpeng Miao in Scientific Reports (2020)

  6. Article

    Open Access

    Rapid evolution of a retro-transposable hotspot of ovine genome underlies the alteration of BMP2 expression and development of fat tails

    Sheep have developed the ability to store fat in their tails, which is a unique way of reserving energy to survive a harsh environment. However, the mechanism underlying this adaptive trait remains largely uns...

    Zhangyuan Pan, Shengdi Li, Qiuyue Liu, Zhen Wang, Zhengkui Zhou, Ran Di in BMC Genomics (2019)

  7. Article

    Open Access

    Evaluation of functionality for serine and threonine phosphorylation with different evolutionary ages in human and mouse

    Rapid evolution of phosphorylation sites could provide raw materials of natural selection to fit the environment by rewiring the regulation of signal pathways. However, a large part of phosphorylation sites wa...

    Benpeng Miao, Qingyu **ao, Weiran Chen, Yixue Li, Zhen Wang in BMC Genomics (2018)

  8. Article

    Open Access

    Correction: Corrigendum: Prioritizing functional phosphorylation sites based on multiple feature integration

    Scientific Reports 6: Article number: 24735 published online: 19 April 2016; updated: 27 June 2016. The original version of this Article contained typographical errors in the Predict Functional Phosphosites we...

    Qingyu **ao, Benpeng Miao, Jie Bi, Zhen Wang, Yixue Li in Scientific Reports (2016)

  9. Article

    Open Access

    Prioritizing functional phosphorylation sites based on multiple feature integration

    Protein phosphorylation is an important type of post-translational modification that is involved in a variety of biological activities. Most phosphorylation events occur on serine, threonine and tyrosine resid...

    Qingyu **ao, Benpeng Miao, Jie Bi, Zhen Wang, Yixue Li in Scientific Reports (2016)

  10. No Access

    Chapter and Conference Paper

    Implementation and Demonstration of WAVE Networking Services for Intelligent Transportation Systems

    Intelligent Transportation System has been a hot topic during the past decades. The Wireless Access in Vehicular Environments (WAVE) system is a radio communication system which is capable of providing safety,...

    Minpeng Miao, Qiang Zheng, Kan Zheng in Internet of Vehicles – Technologies and Se… (2014)