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Circular ecDNA promotes accessible chromatin and high oncogene expression

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  1. Article

    Open Access

    Influence of thickness and strength on plastic instability in tailored steel structures

    A mathematical model was intricately devised to explore the influence of continuous variations in thickness and mechanical properties on the performance of tailor rolled blanks (TRB) and tailor rolled tubes (T...

    Rihuan Lu, Shoudong Chen, **aogong Wang, Meihui Li, Sijia Zhang in Scientific Reports (2024)

  2. Article

    Open Access

    Evaluation of agricultural non-point source pollution using an in-situ and automated photochemical flow analysis system

    Off-line leachate collection from agricultural landscapes cannot guarantee precise evaluation of agricultural non-point source (ANPS) due to geospatial variations, time, and transportation from the field to th...

    Yongqi Chen, Muhammad Awais, Junfeng Wu, Zhenfeng Li in Scientific Reports (2024)

  3. Article

    Open Access

    Empowering high-dimensional optical fiber communications with integrated photonic processors

    Mode-division multiplexing (MDM) in optical fibers enables multichannel capabilities for various applications, including data transmission, quantum networks, imaging, and sensing. However, high-dimensional opt...

    Kaihang Lu, Zengqi Chen, Hao Chen, Wu Zhou, Zunyue Zhang in Nature Communications (2024)

  4. Article

    Open Access

    An injectable liposome-anchored teriparatide incorporated gallic acid-grafted gelatin hydrogel for osteoarthritis treatment

    Intra-articular injection of therapeutics is an effective strategy for treating osteoarthritis (OA), but it is hindered by rapid drug diffusion, thereby necessitating high-frequency injections. Hence, the deve...

    Guoqing Li, Su Liu, Yixiao Chen, ** Zhao, Huihui Xu, Jian Weng in Nature Communications (2023)

  5. Article

    Open Access

    TadA orthologs enable both cytosine and adenine editing of base editors

    Cytidine and adenosine deaminases are required for cytosine and adenine editing of base editors respectively, and no single deaminase could enable concurrent and comparable cytosine and adenine editing. Additi...

    Shuqian Zhang, Bo Yuan, Jixin Cao, Liting Song, **long Chen in Nature Communications (2023)

  6. Article

    Open Access

    TadA reprogramming to generate potent miniature base editors with high precision

    Although miniature CRISPR-Cas12f systems were recently developed, the editing efficacy and targeting range of derived miniature cytosine and adenine base editors (miniCBEs and miniABEs) have not been comprehen...

    Shuqian Zhang, Liting Song, Bo Yuan, Cheng Zhang, Jixin Cao in Nature Communications (2023)

  7. Article

    Open Access

    Cell-lineage controlled epigenetic regulation in glioblastoma stem cells determines functionally distinct subgroups and predicts patient survival

    There is ample support for developmental regulation of glioblastoma stem cells. To examine how cell lineage controls glioblastoma stem cell function, we present a cross-species epigenome analysis of mouse and ...

    ** Lu, Naga Prathyusha Maturi, Malin Jarvius, Irem Yildirim in Nature Communications (2022)

  8. Article

    Open Access

    Dome-arrayed chitosan/PVA hydrogel-based solar evaporator for steam generation

    Water evaporation systems with solar energy as the primary driving energy have received extensive attention in recent years. This work studies the preparation method and performance of hydrogel evaporators usi...

    Minyue Zhu, **aojie Liu, Yanpei Tian, Andrew Caratenuto, Fangqi Chen in Scientific Reports (2022)

  9. Article

    Open Access

    General synthesis of ultrafine metal oxide/reduced graphene oxide nanocomposites for ultrahigh-flux nanofiltration membrane

    Graphene-based membranes have great potential to revolutionize nanofiltration technology, but achieving high solute rejections at high water flux remains extremely challenging. Herein, a family of ultrafine me...

    Wanyu Zhang, Hai Xu, Fei **e, **aohua Ma, Bo Niu, Mingqi Chen in Nature Communications (2022)

  10. Article

    Open Access

    A H2O2-activatable nanoprobe for diagnosing interstitial cystitis and liver ischemia-reperfusion injury via multispectral optoacoustic tomography and NIR-II fluorescent imaging

    Develo** high-quality NIR-II fluorophores (emission in 1000–1700 nm) for in vivo imaging is of great significance. Benzothiadiazole-core fluorophores are an important class of NIR-II dyes, yet ongoing limita...

    Junjie Chen, Longqi Chen, Yinglong Wu, Yichang Fang, Fang Zeng in Nature Communications (2021)

  11. Article

    Open Access

    Focal amplifications are associated with chromothripsis events and diverse prognoses in gastric cardia adenocarcinoma

    The role of focal amplifications and extrachromosomal DNA (ecDNA) is unknown in gastric cardia adenocarcinoma (GCA). Here, we identify frequent focal amplifications and ecDNAs in Chinese GCA patient samples, a...

    Xue-Ke Zhao, Pengwei **ng, **n Song, Miao Zhao, Linxuan Zhao in Nature Communications (2021)

  12. Article

    Open Access

    The short-term associations of chronic obstructive pulmonary disease hospitalizations with meteorological factors and air pollutants in Southwest China: a time-series study

    Chronic obstructive pulmonary disease (COPD) is the fourth major cause of mortality and morbidity worldwide and is projected to be the third by 2030. However, there is little evidence available on the associat...

    Meng Li, Shengqi Chen, Hanqing Zhao, Chengxiang Tang, Yunfeng Lai in Scientific Reports (2021)

  13. Article

    Open Access

    Harvesting energy from sun, outer space, and soil

    While solar power systems have offered a wide variety of electricity generation approaches including photovoltaics, solar thermal power systems, and solar thermoelectric generators, the ability to generate ele...

    Yanpei Tian, **aojie Liu, Fangqi Chen, Yi Zheng in Scientific Reports (2020)

  14. Article

    Open Access

    Blackbody-cavity ideal absorbers for solar energy harvesting

    Spectrally selective solar absorbers (SSAs), which harvest heat from sunlight, are the key to concentrated solar thermal systems. An ideal SSA must have an absorptivity of unity in the solar irradiance wavelen...

    Yanpei Tian, **aojie Liu, Alok Ghanekar, Fangqi Chen in Scientific Reports (2020)

  15. Article

    Open Access

    Docking sites inside Cas9 for adenine base editing diversification and RNA off-target elimination

    Base editing tools with diversified editing scopes and minimized RNA off-target activities are required for broad applications. Nevertheless, current Streptococcus pyogenes Cas9 (SpCas9)-based adenine base editor...

    Shuo Li, Bo Yuan, Jixin Cao, **gqi Chen, **long Chen, Jiayi Qiu in Nature Communications (2020)

  16. Article

    Open Access

    Yeast homologs of human MCUR1 regulate mitochondrial proline metabolism

    Mitochondria house evolutionarily conserved pathways of carbon and nitrogen metabolism that drive cellular energy production. Mitochondrial bioenergetics is regulated by calcium uptake through the mitochondria...

    Mohammad Zulkifli, John K. Neff, Shrishiv A. Timbalia in Nature Communications (2020)

  17. Article

    Open Access

    Genome-wide analysis of fatty acid desaturase genes in rice (Oryza sativa L.)

    Fatty acid desaturases can catalyze saturated or unsaturated fatty acids to form a double bond at various locations in the hydrocarbon chain. In the present study, a total of 20 full-length desaturase genes we...

    Zhiguo E, Chen Chen, **yu Yang, Hanhua Tong, Tingting Li, Lei Wang in Scientific Reports (2019)

  18. Article

    Open Access

    Comprehensive analysis of landslide stability and related countermeasures: a case study of the Lanmuxi landslide in China

    We report on a comprehensive method for analyzing landslide stability and the mitigation effect of countermeasures in this paper. The proposed method is a combination of theoretical method and numerical method...

    Zheng Han, Bin Su, Yange Li, Yangfan Ma, Weidong Wang, Guangqi Chen in Scientific Reports (2019)

  19. Article

    Open Access

    Detection of T lymphocyte subsets and related functional molecules in follicular fluid of patients with polycystic ovary syndrome

    Immune responses play an important role in the pathogenesis of polycystic ovary syndrome (PCOS). However, the characteristics of T lymphocyte subsets in PCOS remain insufficiently understood. In this study, ly...

    Zitao Li, An** Peng, Yuanfa Feng, **aona Zhang, Fenghua Liu in Scientific Reports (2019)

  20. Article

    Open Access

    Joint single-cell DNA accessibility and protein epitope profiling reveals environmental regulation of epigenomic heterogeneity

    Here we introduce Protein-indexed Assay of Transposase Accessible Chromatin with sequencing (Pi-ATAC) that combines single-cell chromatin and proteomic profiling. In conjunction with DNA transposition, the lev...

    **ngqi Chen, Ulrike M. Litzenburger, Yuning Wei, Alicia N. Schep in Nature Communications (2018)

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