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  1. Article

    Open Access

    AttSiOff: a self-attention-based approach on siRNA design with inhibition and off-target effect prediction

    Small interfering RNA (siRNA) is often used for function study and expression regulation of specific genes, as well as the development of small molecule drugs. Selecting siRNAs with high inhibition and low off...

    Bin Liu, Ye Yuan, **aoyong Pan, Hong-Bin Shen, Cheng ** in Med-X (2024)

  2. No Access

    Article

    Lentiviral delivery of co-packaged Cas9 mRNA and a Vegfa-targeting guide RNA prevents wet age-related macular degeneration in mice

    Therapeutic genome editing requires effective and targeted delivery methods. The delivery of Cas9 mRNA using adeno-associated viruses has led to potent in vivo therapeutic efficacy, but can cause sustained Cas9 e...

    Sikai Ling, Shiqi Yang, **nde Hu, Di Yin, Yao Dai in Nature Biomedical Engineering (2021)

  3. No Access

    Article

    Inferring novel genes related to oral cancer with a network embedding method and one-class learning algorithms

    Oral cancer (OC) is one of the most common cancers threatening human lives. However, OC pathogenesis has yet to be fully uncovered, and thus designing effective treatments remains difficult. Identifying genes ...

    Lei Chen, Yu-Hang Zhang, Guohua Huang, **aoyong Pan, Tao Huang, Yu-Dong Cai in Gene Therapy (2019)

  4. No Access

    Article

    HIV infection alters the human epigenetic landscape

    Many complex diseases or traits are the results of both genetic and environmental factors. The environmental factors affect the human body by modifying its epigenetics, which controls the activity of genomes w...

    Lei Chen, Shiqi Zhang, **aoyong Pan, **aoHua Hu, Yu-Hang Zhang, Fei Yuan in Gene Therapy (2019)

  5. Article

    Open Access

    Transcriptomic landscape of lncRNAs in inflammatory bowel disease

    Inflammatory bowel disease (IBD) is a complex multi-factorial inflammatory disease with Crohn’s disease (CD) and ulcerative colitis (UC) being the two most common forms. A number of transcriptional profiling s...

    Aashiq H Mirza, Claus HB Berthelsen, Stefan E Seemann, **aoyong Pan in Genome Medicine (2015)