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  1. Article

    Open Access

    Centralized industrialization of pork in Europe and America contributes to the global spread of Salmonella enterica

    Salmonella enterica causes severe food-borne infections through contamination of the food supply chain. Its evolution has been associated with human activities, especially animal husbandry. Advances in intensive ...

    Heng Li, Yilei Wu, Dan Feng, Quangui Jiang, Shengkai Li, Jie Rong in Nature Food (2024)

  2. Article

    Open Access

    Heterogeneous changes in gut and tumor microbiota in patients with pancreatic cancer: insights from clinical evidence

    Pancreatic cancer is the foremost contributor to cancer-related deaths globally, and its prevalence continues to rise annually. Nevertheless, the underlying mechanisms behind its development remain unclear and...

    Feng Zhao, Anli Chen, **aotian Wu, **angyu Deng, Jiali Yang, Jianjiang Xue in BMC Cancer (2024)

  3. No Access

    Article

    Frequency-domain characteristic analysis of PCNN

    The pulse-coupled neural network (PCNN) is widely used in digital image processing. Although existing studies mainly analyze the network from the time-domain perspective, there are still some limitations in re...

    **angyu Deng, **kai Huang, Haiyue Yu in The Journal of Supercomputing (2024)

  4. Article

    Open Access

    HPV-associated cervicovaginal microbiome and host metabolome characteristics

    Cervicovaginal microbiome plays an important role in the persistence of HPV infection and subsequent disease development. However, cervicovaginal microbiota varied cross populations with different habits and r...

    Yao Zhang, Xu Wu, Dan Li, Rong Huang, **angyu Deng, Mingxing Li in BMC Microbiology (2024)

  5. Article

    Open Access

    Downregulation of lncRNA CDKN2B-AS1 attenuates inflammatory response in mice with allergic rhinitis by regulating miR-98-5p/SOCS1 axis

    Long non-coding RNA cyclin-dependent kinase inhibitor 2B antisense RNA 1 (CDKN2B-AS1) in various diseases has been verified. However, the underlying mechanism of CDKN2B-AS1 contributes to the development of al...

    Bangyu Deng, Yunxia zhao, Jisheng Liu in Functional & Integrative Genomics (2024)

  6. No Access

    Article

    Prediction of Depth-Averaged Velocity for Flow Though Submerged Vegetation Using Least Squares Support Vector Machine with Bayesian Optimization

    Considering the limited accuracy of classical empirical formulas and traditional Machine Learning (ML) models for predicting the depth-averaged velocity of flow through submerged vegetation, in this article, a...

    Yangyu Deng, Yakun Liu in Water Resources Management (2024)

  7. Article

    Open Access

    Distributed genoty** and clustering of Neisseria strains reveal continual emergence of epidemic meningococcus over a century

    Core genome multilocus sequence ty** (cgMLST) is commonly used to classify bacterial strains into different types, for taxonomical and epidemiological applications. However, cgMLST schemes require central da...

    Ling Zhong, Menghan Zhang, Libing Sun, Yu Yang, Bo Wang in Nature Communications (2023)

  8. Article

    Open Access

    Structural basis for the activation of a compact CRISPR-Cas13 nuclease

    The CRISPR-Cas13 ribonucleases have been widely applied for RNA knockdown and transcriptional modulation owing to their high programmability and specificity. However, the large size of Cas13 effectors and thei...

    **angyu Deng, Emmanuel Osikpa, Jie Yang, Seye J. Oladeji in Nature Communications (2023)

  9. Article

    Open Access

    Comparative genomics unveils extensive genomic variation between populations of Listeria species in natural and food-associated environments

    Comprehending bacterial genomic variation linked to distinct environments can yield novel insights into mechanisms underlying differential adaptation and transmission of microbes across environments. Gaining s...

    **gqiu Liao, **aodong Guo, Shaoting Li, Sai Manohar Balu Anupoju in ISME Communications (2023)

  10. Article

    Open Access

    Association between total cholesterol and total bone mineral density in US adults: National Health and Nutrition Examination Survey (NHANES), 2011–2018

    Accumulated evidence indicates that cholesterol is offensive to bone metabolism. Therefore, we examined the real-world study among total cholesterol and total bone mineral density (BMD). We investigated the re...

    Li cao, Wei Wu, **angyu Deng, Haoyu Guo in Journal of Orthopaedic Surgery and Research (2023)

  11. Article

    Engineered LwaCas13a with enhanced collateral activity for nucleic acid detection

    Clustered regularly interspaced short palindromic repeats (CRISPR)–CRISPR-associated protein 13 (Cas13) has been rapidly developed for nucleic-acid-based diagnostics by using its characteristic collateral acti...

    Jie Yang, Yang Song, **angyu Deng, Jeffrey A. Vanegas, Zheng You in Nature Chemical Biology (2023)

  12. Article

    Open Access

    A novel prognostic model for cutaneous melanoma based on an immune-related gene signature and clinical variables

    Abundant evidence has indicated that the prognosis of cutaneous melanoma (CM) patients is highly complicated by the tumour immune microenvironment. We retrieved the clinical data and gene expression data of CM...

    Yifan Tang, Huicong Feng, Lupeng Zhang, Chiwen Qu, **long Li in Scientific Reports (2022)

  13. Article

    Correction to: PCNN double step firing mode for image edge detection

    **angyu Deng, Yahan Yang, Huan Zhang, Yide Ma in Multimedia Tools and Applications (2022)

  14. No Access

    Article

    PCNN double step firing mode for image edge detection

    Pulse-coupled Neural Network (PCNN) is a third-generation artificial neural network that requires no training. Neurons in PCNN have two pulse burst modes: firing mode and fire-extinguishing mode. A lot of rese...

    **angyu Deng, Yahan Yang, Huan Zhang, Yide Ma in Multimedia Tools and Applications (2022)

  15. No Access

    Article

    Aggregated pyramid attention network for mass segmentation in mammograms

    Intra-class inconsistency and inter-class indistinction are intractable problems that commonly exist in breast mass segmentation from mammograms. In this work, a novel deep learning segmentation model is prese...

    Meng Lou, Yunliang Qi, **aorong Li, Chunbo Xu in Multimedia Tools and Applications (2022)

  16. Article

    Open Access

    Self-directed online machine learning for topology optimization

    Topology optimization by optimally distributing materials in a given domain requires non-gradient optimizers to solve highly complicated problems. However, with hundreds of design variables or more involved, s...

    Changyu Deng, Yizhou Wang, Can Qin, Yun Fu, Wei Lu in Nature Communications (2022)

  17. No Access

    Article

    A Comprehensive Overview of Image Enhancement Techniques

    Image enhancement plays an important role in improving image quality in the field of image processing, which is achieved by highlighting useful information and suppressing redundant information in the image. I...

    Yunliang Qi, Zhen Yang, Wenhao Sun, Meng Lou in Archives of Computational Methods in Engin… (2022)

  18. No Access

    Article

    Adaptive channel and multiscale spatial context network for breast mass segmentation in full-field mammograms

    Breast cancer is currently the second most fatal cancer in women, but timely diagnosis and treatment can reduce its mortality. Breast masses are the most obvious means of cancer identification, and thus, accur...

    Wenwei Zhao, Meng Lou, Yunliang Qi, Yiming Wang, Chunbo Xu in Applied Intelligence (2021)

  19. Article

    Open Access

    Global spread of Salmonella Enteritidis via centralized sourcing and international trade of poultry breeding stocks

    A pandemic of Salmonella enterica serotype Enteritidis emerged in the 1980s due to contaminated poultry products. How Salmonella Enteritidis rapidly swept through continents remains a historical puzzle as the pat...

    Shaoting Li, Yingshu He, David Ames Mann, **angyu Deng in Nature Communications (2021)

  20. No Access

    Article

    Experimental investigation and viscoelastic-plastic model for sandstone under cyclic tensile stress

    Abandoned roadways of coal mines are suitable for compressed air energy storage after proper treatment with grouting reinforcement and concrete lining. According to the theoretical analysis, the rock mass and ...

    **nran Xue, Kai Zhang, Weiming Chen in Geomechanics and Geophysics for Geo-Energy… (2021)

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