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  1. No Access

    Article

    High-Resolution Melting (HRM) analysis of DNA methylation using semiconductor chip-based digital PCR

    Digital PCR (dPCR) technology allows absolute quantification and detection of disease-associated rare variants, and thus the use of dPCR technology has been increasing in clinical research and diagnostics. The...

    **uk Jeong, Yongsu Yang, Min-Sik Song, Hee-Young Won, Andrew T. Han in Genes & Genomics (2024)

  2. No Access

    Article

    Exploring oral bacterial compositional network in two oral disease groups using a convergent approach of NGS-molecular diagnostics

    Since most of the commonly known oral diseases are explained in link with balance of microbial community, an accurate bacterial taxonomy profiling for determining bacterial compositional network is essential. ...

    **uk Jeong, Kung Ahn, Kyeongeui Yun, Minseo Kim, Yeseul Choi in Genes & Genomics (2024)

  3. Article

    Open Access

    Fermentative aminopyrrolnitrin production by metabolically engineered Corynebacterium glutamicum

    Aminopyrrolnitrin (APRN), a natural halogenated phenylpyrrole derivative (HPD), has strong antifungal and antiparasitic activities. Additionally, it showed 2.8-fold increased photostability compared to pyrroln...

    Virginia Ryandini Melati Putri, Min-Hee Jung, Ji-Young Lee in Microbial Cell Factories (2024)

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    Article

    Development of fluorescence-linked immunosorbent assay for rapid detection of Staphylococcus aureus

    Staphylococcus aureus is a major pathogen that causes infections and life-threatening diseases. Although antibiotics, such as methicillin, have been used, methicillin-resistant S. aureus (MRSA) causes high morbid...

    Joo-Kyung Kim, Hyun-Young Yun, Jae-Seok Kim in Applied Microbiology and Biotechnology (2023)

  5. Article

    Open Access

    Loop-mediated isothermal amplification assay for screening congenital cytomegalovirus infection in newborns

    Congenital cytomegalovirus (CMV) infection is a common cause of sensorineural hearing loss and neurodevelopmental impairment in newborns. However, congenital CMV infection cannot be diagnosed using samples col...

    Hyeonseek Park, Doo Ri Kim, Areum Shin in Applied Microbiology and Biotechnology (2023)

  6. Article

    Open Access

    Alterations in sea urchin (Mesocentrotus nudus) microbiota and their potential contributions to host according to barren severity

    Sea urchins are biotic factors driving the decline of kelp forests in marine ecosystems. However, few studies have analyzed the microbiota of surviving sea urchins in barren regions with scarce diet resources....

    Joon-Young Park, Jae-Won Jo, Yu-Jeong An, **-Jae Lee in npj Biofilms and Microbiomes (2023)

  7. Article

    Open Access

    Multi-omics data of gastric cancer cell lines

    Gastric cancer (GC) is the fourth most common cancer worldwide, with the highest incidence and mortality regardless of sex. Despite technological advances in diagnosing and treating gastric cancer, GC still ha...

    Eun-Hye Seo, Yun-Jae Shin, Hee-** Kim, Jeong-Hwan Kim, Yong Sung Kim in BMC Genomic Data (2023)

  8. Article

    Open Access

    Identification and phylogenetic analysis of Enterococcus isolates using MALDI-TOF MS and VITEK 2

    The bacterial genus Enterococcus encompasses 38 species. Two of the most common species are E. faecalis and E. faecium. Recently, however, there has been an increase in clinical reports concerning less prevalent

    Se-Hyung Kim, Jung-Whan Chon, Hyo-Won Jeong, Kwang-Young Song in AMB Express (2023)

  9. Article

    Open Access

    Isopropanol biosynthesis from crude glycerol using fatty acid precursors via engineered oleaginous yeast Yarrowia lipolytica

    Isopropanol is widely used as a biofuel and a disinfectant. Chemical preparation of isopropanol destroys the environment, which makes biological preparation of isopropanol necessary. Previous studies focused o...

    **aoyu Shi, Hyeon Min Park, Minhye Kim, Myeong-Eun Lee in Microbial Cell Factories (2022)

  10. Article

    Open Access

    Genomic and transcriptomic analysis of Korean colorectal cancer patients

    Colorectal cancer (CRC) is the third most common type of diagnosed cancer in the world and has the second-highest mortality rate. Meanwhile, South Korea has the second-highest incidence rate for CRC in the world.

    Sol A Jeon, Ye ** Ha, Jong-Hwan Kim, Jeong-Hwan Kim, Seon-Kyu Kim in Genes & Genomics (2022)

  11. Article

    Open Access

    Identification of accession-specific variants and development of KASP markers for assessing the genetic makeup of Brassica rapa seeds

    Most crop seeds are F1 hybrids. Seed providers and plant breeders must be confident that the seed supplied to growers is of known, and uniform, genetic makeup. This requires maintenance of pure genotypes of th...

    Seongmin Hong, Su Ryun Choi, Jihyeong Kim, Young-Min Jeong, Ju-Sang Kim in BMC Genomics (2022)

  12. Article

    Open Access

    Host tp53 mutation induces gut dysbiosis eliciting inflammation through disturbed sialic acid metabolism

    Host tp53 mutations are frequently found during the early stages of colitis-associated colorectal cancer (CAC), but whether such mutations induce gut microbiota dysbiosis and chronic intestinal inflammation that ...

    Jae-Geun Lee, Soohyun Lee, Juhee Jeon, Hyun Gi Kong, Hyun-Ju Cho in Microbiome (2022)

  13. No Access

    Article

    Comparison between MGI and Illumina sequencing platforms for whole genome sequencing

    Illumina next generation sequencing (NGS) systems are the major sequencing platform in worldwide next-generation sequencing market. On the other hand, MGI Tech launched a series of new NGS equipment that promi...

    Sol A. Jeon, Jong Lyul Park, Seung-** Park, Jeong Hwan Kim in Genes & Genomics (2021)

  14. Article

    Open Access

    QTL map** for pre-harvest sprouting resistance in japonica rice varieties utilizing genome re-sequencing

    Pre-harvest sprouting (PHS) leads to serious economic losses because of reductions in yield and quality. To analyze the quantitative trait loci (QTLs) for PHS resistance in japonica rice, PHS rates on panicles we...

    Kyeong-Seong Cheon, Yong Jae Won, Young-Min Jeong in Molecular Genetics and Genomics (2020)

  15. Article

    Open Access

    Absence of single nucleotide polymorphisms (SNPs) in the open reading frame (ORF) of the prion protein gene (PRNP) in a large sampling of various chicken breeds

    Prion diseases are zoonotic diseases with a broad infection spectrum among mammalian hosts and are caused by the misfolded prion protein (PrPSc) derived from the normal prion protein (PrPC), which encodes the pri...

    Yong-Chan Kim, Sae-Young Won, Byung-Hoon Jeong in BMC Genomics (2019)

  16. Article

    Open Access

    Pharmacogenomic analysis of patient-derived tumor cells in gynecologic cancers

    Gynecologic malignancy is one of the leading causes of mortality in female adults worldwide. Comprehensive genomic analysis has revealed a list of molecular aberrations that are essential to tumorigenesis, pro...

    Jason K. Sa, Jae Ryoung Hwang, Young-Jae Cho, Ji-Yoon Ryu, Jung-Joo Choi in Genome Biology (2019)

  17. No Access

    Article

    Seroprevalence of Severe Fever with Thrombocytopenia Syndrome Phlebovirus in Domesticated Deer in South Korea

    Severe fever with thrombocytopenia syndrome phlebovirus (SFTSV) has a wide host range. Not only has it been found in humans, but also in many wild and domesticated animals. The infection of breeding deer on fa...

    Min-Ah Yu, Kwang-Min Yu, Su-** Park, Young-Il Kim in Virologica Sinica (2019)

  18. Article

    Open Access

    Raptor genomes reveal evolutionary signatures of predatory and nocturnal lifestyles

    Birds of prey (raptors) are dominant apex predators in terrestrial communities, with hawks (Accipitriformes) and falcons (Falconiformes) hunting by day and owls (Strigiformes) hunting by night.

    Yun Sung Cho, Je Hoon Jun, Jung A Kim, Hak-Min Kim, Oksung Chung in Genome Biology (2019)

  19. Article

    Open Access

    Performance evaluation of commercial library construction kits for PCR-based targeted sequencing using a unique molecular identifier

    Target enrichment is a critical component of targeted deep next-generation sequencing for the cost-effective and sensitive detection of mutations, which is predominantly performed by either hybrid selection or...

    Jongsuk Chung, Ki-Wook Lee, Chung Lee, Seung-Ho Shin, Sungkyu Kyung in BMC Genomics (2019)

  20. Article

    Open Access

    Correction to: Genomic and metatranscriptomic analyses of carbon remineralization in an Antarctic polynya

    Following publication of the original article [1], the authors identified wrong citations in the maintext.

    So-Jeong Kim, Jong-Geol Kim, Sang-Hoon Lee, Soo-Je Park, Joo-Han Gwak in Microbiome (2019)

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