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  1. Alzheimer’s Disease Prevention and Treatment Based on Population-Based Approaches

    The development of effective prevention and treatment strategies for Alzheimer’s disease (AD) and dementia is hindered by limited knowledge of the...
    Protocol 2024
  2. CSF N-Glycomics Using MALDI MS Techniques

    In this chapter, we will present the methodology currently applied in our laboratory for the structural elucidation of the cerebrospinal fluid (CSF)...
    Angela Messina, Donata Agata Romeo, ... Domenico Garozzo in Biomarkers for Alzheimer’s Disease Drug Development
    Protocol 2024
  3. High-Throughput Lipidomic and Metabolomic Profiling for Brain Tissue and Biofluid Samples in Neurodegenerative Disorders

    Recent research has revealed the potential of lipidomics and metabolomics in identifying new biomarkers and mechanistic insights for...
    Bonne M. Thompson, Giuseppe Astarita in Biomarkers for Alzheimer’s Disease Drug Development
    Protocol 2024
  4. In Situ Imaging of Proteins Using DNA-PAINT Super-Resolution Microscopy

    The spatial resolution of conventional light microscopy is restricted by the diffraction limit to hundreds of nanometers. Super-resolution microscopy...
    Florian Schueder, Ralf Jungmann in Imaging Cell Signaling
    Protocol 2024
  5. Imaging Cell Signaling in Tissues Using the IBEX Method

    The study of cell signaling within tissues can be enhanced using highly multiplexed immunohistochemistry to localize the presence and spatial...
    Yuxuan Meng, Changtai Li, ... Colin J. Chu in Imaging Cell Signaling
    Protocol 2024
  6. Deep Learning-Based Cell Tracking in Deforming Organs and Moving Animals

    Cell tracking is an essential step in extracting cellular signals from moving cells, which is vital for understanding the mechanisms underlying...
    Chentao Wen in Imaging Cell Signaling
    Protocol 2024
  7. CSF N-Glycomics Using High-Throughput UPLC-ESI Techniques in Alzheimer’s Disease

    In this chapter, we will present a high-throughput method applied in our laboratory for the structural elucidation of the cerebrospinal fluid (CSF)...
    Angela Messina, Rita Barone, ... Domenico Garozzo in Biomarkers for Alzheimer’s Disease Drug Development
    Protocol 2024
  8. Meta-analysis of Map** Studies: Integrating QTLs Towards Candidate Gene Discovery

    Meta-analysis consists of pooling results from multiple studies, and allows prediction of more precise and meaningful data. A plethora of QTL map**...
    Anita Kumari, Divya Sharma, ... Manu Agarwal in Genomics Data Analysis for Crop Improvement
    Protocol 2024
  9. Map** of Quantitative Traits Loci: Harnessing Genomics Revolution for Dissecting Complex Traits

    With the onset of the genomic era, map** of Quantitative Traits Loci (QTLs) appears to be a feasible solution for dissecting the complex...
    Sanchika Snehi, Mukesh Choudhary, ... Nitish Ranjan Prakash in Genomics Data Analysis for Crop Improvement
    Protocol 2024
  10. Assembly, Annotation and Visualization of NGS Data

    The next-generation sequencing technologies have revolutionized the field of agriculture with the advent of ever-evolving chemistries and a reduction...
    Kalyani M. Barbadikar, Tejas C. Bosamia, ... M. Sheshu Madhav in Genomics Data Analysis for Crop Improvement
    Protocol 2024
  11. Overview of the Bioinformatics Databases and Tools for Genome Research and Crop Improvement

    The advancement of sequencing technologies and molecular techniques has generated a huge amount of biological data which needs to be analyzed and...
    Divya Selvakumar, Selva Babu Selvamani, Jayakanthan Mannu in Genomics Data Analysis for Crop Improvement
    Protocol 2024
  12. Statistical and Biological Data Analysis Using Programming Languages

    Rapid progress in high throughput sequencing technologies has generated an unprecedented huge amount of complex and heterogeneous biological data and...
    Ritwika Das, Soumya Sharma, Debopam Rakshit in Genomics Data Analysis for Crop Improvement
    Protocol 2024
  13. Trait Based Association Map** in Plants

    Genome-wide association studies (GWAS) estimate the likelihood of association between genotype and phenotype in any large collection of material and...
    Priyanka Jain, Bipratip Dutta, Amitha Mithra Sevanthi in Genomics Data Analysis for Crop Improvement
    Protocol 2024
  14. Statistical and Quantitative Genetics Studies

    Quantitative genetics and plant breeding are non-exclusive and these disciplines has been benefited from each other for the past 100 years. As a...
    Rumesh Ranjan, Wajhat Un Nisa, ... Yogesh Vikal in Genomics Data Analysis for Crop Improvement
    Protocol 2024
  15. CRISPR/Cas9 Vector Construction for Gene Knockout

    This protocol outlines the construction of a plant transformation plasmid to express both the Cas9 nuclease and individual guide RNA (gRNA),...
    Markus Freudhofmaier, Jacob W. Hoyle, Fatemeh Maghuly in Plant Functional Genomics
    Protocol 2024
  16. A Comprehensive Protocol for Assembly of Multiple gRNAs into a Direct Vector for Genome Editing in Tomato

    The Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR)—Cas 9 (CRISPR-associated protein 9) is a robust DNA-encoded, RNA-mediated...
    Valluri V. Satyavathi, Kunnappady Princy, ... Yellamaraju Sreelakshmi in Plant Functional Genomics
    Protocol 2024
  17. Genome Editing in Brassica juncea Using CRISPR/Cas9 Technology

    Modern genome editing tools particularly CRISPR/Cas9 have revolutionized plant genome manipulation for engineering resilience against changing...
    Niaz Ahmad, Samia Fatima, ... Mehboob-ur-Rahman in Plant Functional Genomics
    Protocol 2024
  18. A General Protocol for Gene Expression Analysis in Chemically Mutant Coffee Plants in Response to Rust (Hemileia vastatrix Berk & Broome) Infection

    Coffea spp. is the source of one of the most widely consumed beverages in the world. However, the cultivation of this crop is threatened by Hemileia...
    Andrés Gatica-Arias, Carolina Muñoz-Flores, Alejandro Bolívar-González in Plant Functional Genomics
    Protocol 2024
  19. Measurement of O2 Uptake and Evolution in Leaves In Vivo Using Stable Isotopes and Membrane Inlet Mass Spectrometry

    Oxygen is both product and substrate of photosynthesis and metabolism in plants, by oxygen evolution through water splitting and uptake by...
    Steven M. Driever in Photosynthesis
    Protocol 2024
  20. Carotenoid Extraction from Plant Tissues

    Carotenoids are the natural pigments available in nature and exhibit different colors such as yellow, red, and orange. These are a class of...
    Kagolla Priscilla, Vinay Sharma, ... Rakesh Kumar in Plant Functional Genomics
    Protocol 2024
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