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Organoid Culture of Different Intestinal Segments from Human and Mouse

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  1. Protocol

    Correction to: Magnetic Resonance Spectroscopy (MRS) in Alzheimer’s Disease

    Nasim Sheikh-Bahaei, Michelle Chen in Biomarkers for Alzheimer’s Disease Drug De… (2024)

  2. Protocol

    Machine Learning for Cerebrovascular Disorders

    Cerebrovascular disease refers to a group of conditions that affect blood flow and the blood vessels in the brain. It is one of the leading causes of mortality and disability worldwide, imposing a significant ...

    Yannan Yu, David Yen-Ting Chen in Machine Learning for Brain Disorders (2023)

  3. Protocol

    Image Registration: Fundamentals and Recent Advances Based on Deep Learning

    Registration is the process of establishing spatial correspondences between images. It allows for the alignment and transfer of key information across subjects and atlases. Registration is thus a central techn...

    Min Chen, Nicholas J. Tustison, Rohit Jena in Machine Learning for Brain Disorders (2023)

  4. Protocol

    A Regulatory Science Perspective on Performance Assessment of Machine Learning Algorithms in Imaging

    This chapter presents a regulatory science perspective on the assessment of machine learning algorithms in diagnostic imaging applications. Most of the topics are generally applicable to many medical imaging a...

    Weijie Chen, Daniel Krainak, Berkman Sahiner in Machine Learning for Brain Disorders (2023)

  5. Protocol

    Studying Annelida Regeneration in a Novel Model Organism: The Freshwater Aeolosoma viride

    Aeolosoma viride, a globally distributed freshwater annelid, has a semitransparent appearance with 10 to 12 segments, about 2 to 3 mm in length. It is easy to raise and handle in laboratory conditions. Due to its...

    Chiao-** Chen, Sheridan Ke-Wing Fok, Cheng-Yi Chen in Whole-Body Regeneration (2022)

  6. Protocol

    Monitoring Telomere Maintenance During Regeneration of Annelids

    Telomere shortening is a hallmark of aging and eventually constrains the proliferative capacity of cells. The protocols discussed here are used for monitoring telomeres comprehensively in Aeolosoma viride, a mode...

    Nithila A. Joseph, Chi-Fan Chen, Jiun-Hong Chen, Liuh-Yow Chen in Whole-Body Regeneration (2022)

  7. Protocol

    Manipulation of Gene Activity in the Regenerative Model Sea Anemone, Nematostella vectensis

    With a surprisingly complex genome and an ever-expanding genetic toolkit, the sea anemone has become a powerful model system for the study of both development and whole-body . Here we provide the most curr...

    Eric M. Hill, Cheng-Yi Chen, Florencia del Viso in Whole-Body Regeneration (2022)

  8. Protocol

    Bulk Sequencing from mRNA with UMI for Evaluation of B-Cell Isotype and Clonal Evolution: A Method by the AIRR Community

    During the course of an immune response to a virus such as influenza, B cells undergo activation, clonal expansion, isotype switching, and somatic hypermutation (SHM). Members of an antigen-experienced B-cell ...

    Nidhi Gupta, Susanna Marquez, Cinque Soto, Elaine C. Chen in Immunogenetics (2022)

  9. Protocol

    Bulk gDNA Sequencing of Antibody Heavy-Chain Gene Rearrangements for Detection and Analysis of B-Cell Clone Distribution: A Method by the AIRR Community

    In this method we illustrate how to amplify, sequence, and analyze antibody/immunoglobulin (IG) heavy-chain gene rearrangements from genomic DNA that is derived from bulk populations of cells by next-generatio...

    Aaron M. Rosenfeld, Wenzhao Meng, Kalisse I. Horne, Elaine C. Chen in Immunogenetics (2022)

  10. Protocol

    Correction to: Methods to Detect Immunogenic Cell Death In Vivo

    This book was inadvertently published with one of the contributing author’s name printed as Aitziber Buqué Martinez, which should have been Aitziber Buqué.

    Takahiro Yamazaki, Aitziber Buqué in Biomarkers for Immunotherapy of Cancer (2020)

  11. Protocol

    Study of MAIT Cell Activation in Viral Infections In Vivo

    MAIT cells are abundant, highly evolutionarily conserved innate-like lymphocytes expressing a semi-invariant T cell receptor (TCR), which recognizes microbially derived small intermediate molecules from the ri...

    Timothy S. C. Hinks, Bonnie van Wilgenburg, Huimeng Wang, Liyen Loh in MAIT Cells (2020)

  12. Protocol

    Erratum to: Microgrooved Surface Modulates Neuron Differentiation in Human Embryonic Stem Cells

    David Lu, Chi-Shuo Chen, Chao-Sung Lai, Sushant Soni in Human Embryonic Stem Cell Protocols (2016)

  13. Protocol

    Erratum to: Enzyme-Free Dissociation of Neurospheres by a Microfluidic Chip-Based Method

    Ching-Hui Lin, Hao-Chen Chang, Don-Ching Lee, Ing-Ming Chiu in Stem Cell Heterogeneity (2016)

  14. Protocol

    Erratum to: Functional Analysis of Histone Deacetylase 11 (HDAC11)

    Jie Chen, Eva Sahakian, John Powers, Maritza Lienlaf in Histone Deacetylases (2016)

  15. Protocol

    PCR Amplification and Sequencing Analysis of Full-Length Turkey Coronavirus Spike Gene

    Turkey coronaviral enteritis caused by turkey coronavirus (TCoV) continues to infect turkey flocks, resulting in significant economic loss. Determining and understanding genetic relationships among different T...

    Yi-Ning Chen, Aydemir Akin, Chien Chang Loa, Mustafa Ababneh in Animal Coronaviruses (2016)

  16. Protocol

    Virus Neutralization Assay for Turkey Coronavirus Infection

    Turkey coronavirus (TCoV) infection induces the production of protective antibodies against the sequent exposure of TCoV. Serological tests to determine TCoV-specific antibodies are critical to evaluate previo...

    Yi-Ning Chen, Ching Ching Wu, Tsang Long Lin in Animal Coronaviruses (2016)

  17. Protocol

    Antibody-Capture Enzyme-Linked Immunosorbent Assay for Detection of Antibody to Turkey Coronavirus Using Infectious Bronchitis Virus or Recombinant Nucleocapsid Protein as Coating Antigen

    Turkey coronavirus (TCoV) infection continues to threaten turkey industry. Because specific treatment and effective vaccination program are not available, rapid and cost-effective detection of antibodies to TC...

    Chien Chang Loa, Mohamed Abdelwahab, Yi-Ning Chen, Ming-Kun Hsieh in Animal Coronaviruses (2016)

  18. Protocol

    Real-Time Reverse Transcription-Polymerase Chain Reaction for Detection and Quantitation of Turkey Coronavirus RNA in Feces and Intestine Tissues

    Turkey coronavirus (TCoV) infection causes acute atrophic enteritis in turkey poults, leading to significant economic loss in the turkey industry. Rapid detection, differentiation, and quantitation of TCoV are...

    Yi-Ning Chen, Ching Ching Wu, Tsang Long Lin in Animal Coronaviruses (2016)

  19. Protocol

    ERRATUM TO: Induction of Brain Arteriovenous Malformation in the Adult Mouse

    Wanqiu Chen, William L. Young, Hua Su in Cerebral Angiogenesis (2014)

  20. Protocol

    Identification of Viral Peptide Fragments for Vaccine Development

    We report a simple method for identifying foldable viral surface protein fragments in a random but systematic manner. The method involves digestion and reassembly of a target gene to generate a pool of smaller...

    Zhanglin Lin, Shuang Li, Yong Chen in Viral Applications of Green Fluorescent Protein (2009)

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