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Single-Molecule Poly(A) Tail Sequencing (SM-PATseq) Using the PacBio Platform

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  1. Protocol

    Correction to: ROS Signaling in Plants

    Francisco J. Corpas, José M. Palma in ROS Signaling in Plants (2024)

  2. Protocol

    Corrections to: Plastids

    Eric Maréchal in Plastids (2024)

  3. Protocol

    Correction to: Tissue-Resident Macrophages: Methods and Protocols

    Elvira Mass in Tissue-Resident Macrophages (2024)

  4. Protocol

    Correction to: Xylem: Methods and Protocols

    Javier Agusti in Xylem (2024)

  5. Protocol

    Ready-to-Record Cells for Kinetic Screening of VGICs

    Voltage-gated ion channels (VGICs) are integral membrane proteins crucial for transmitting electrical signals in excitable cells. Understanding the kinetics of these ion channels requires conducting patch-clam...

    Emmanuelle Logette, Rajnish Ranjan in Potassium Channels (2024)

  6. Protocol

    Use of Surface Plasmon Resonance Technique for Studies of Inter-domain Interactions in Ion Channels

    Ion channels are transmembrane proteins essential for cellular functions and are important drug targets. Surface plasmon resonance (SPR) is a powerful technique for investigating protein–protein and protein–sm...

    Purushottam B. Tiwari, Pareesa Kamgar-Dayhoff, Prakriti Tiwari in Potassium Channels (2024)

  7. Protocol

    A Practical Approach to Using the Genomic Standards Consortium MIxS Reporting Standard for Comparative Genomics and Metagenomics

    Comparative analysis of (meta)genomes necessitates aggregation, integration, and synthesis of well-annotated data using standards. The Genomic Standards Consortium (GSC) collaborates with the research communit...

    Emiley A. Eloe-Fadrosh, Christopher J. Mungall, Mark Andrew Miller in Comparative Genomics (2024)

  8. Protocol

    Correction to: Exosomal MicroRNAs: Comprehensive Methods from Exosome Isolation to miRNA Extraction and Purity Analysis

    In the original version of this book, the first and the last names of the authors of Chapter 5 were in a flipped format (D’Agostino Erika, Muro Annamaria, Sgueglia Giulia, Massaro Crescenzo, Dell’Aversana Carm...

    Erika D’Agostino, Annamaria Muro, Giulia Sgueglia, Crescenzo Massaro in MicroRNA Profiling (2023)

  9. Protocol

    Correction to: Advanced Technologies and Automation in mES Cell Workflow

    Anna Pham, Roger Caothien, Lucinda Tam, Diego Diaz, Marques Jackson in Transgenesis (2023)

  10. Protocol

    Correction to: Golgi

    The original version of the book was inadvertently published without incorporating the author’s proof corrections mentioned below. The chapters have now been corrected and approved by the author.

    Yanzhuang Wang, Vladimir V Lupashin, Todd R. Graham in Golgi (2023)

  11. Protocol

    Correction to: Cloning by SCNT: Integrating Technical and Biology-Driven Advances

    Marcelo Tigre Moura in Somatic Cell Nuclear Transfer Technology (2023)

  12. Protocol

    Measuring CTL Lytic Granule Secretion and Target Cell Membrane Repair by Fluorescent Lipophilic Dye Uptake at the Lytic Synapse

    CD8+ cytotoxic T lymphocytes (CTL) play a key role in anti-tumor immune response. They are therefore at the heart of current immunotherapy protocols against cancer. Despite current strategies to potentiate CTL re...

    Sabina Müller, Liza Filali, Marie-Pierre Puissegur in The Immune Synapse (2023)

  13. Protocol

    Methods of Machine Learning-Based Chimeric Antigen Receptor Immunological Synapse Quality Quantification

    Chimeric Antigen Receptor (CAR)-mediated immunotherapy shows promising results for refractory blood cancers. Currently, six CAR-T drugs have been approved by U.S. Food and Drug Administration (FDA). Theoretica...

    Julian Gan, Jong Hyun Cho, Ryan Lee, Alireza Naghizadeh in The Immune Synapse (2023)

  14. Protocol

    Separation of Single Core and Multicore Lytic Granules by Subcellular Fractionation and Immunoisolation

    Subcellular fractionation is an important tool used to separate intracellular organelles, structures or proteins. Here, we describe a stepwise protocol to isolate two types of lytic granules, multicore (MCG), ...

    Claudia Schirra, Nadia Alawar, Ute Becherer, Hsin-Fang Chang in The Immune Synapse (2023)

  15. Protocol

    Profiling Chromatin Accessibility on Replicated DNA with repli-ATAC-Seq

    Open or accessible chromatin typifies euchromatic regions and helps define cell type-specific transcription programs. DNA replication massively disorders chromatin composition and structure, and how accessible...

    Kathleen R. Stewart-Morgan, Anja Groth in Chromatin Accessibility (2023)

  16. Protocol

    Read-Based Phasing and Analysis of Phased Variants with WhatsHap

    WhatsHap is a command-line tool for phasing and phasing-related tasks. It allows to infer haplotypes in diploid and polyploid samples based on (preferably long) reads covering at least two heterozygous variant...

    Marcel Martin, Peter Ebert, Tobias Marschall in Haploty** (2023)

  17. Protocol

    Exploiting the RUSH System to Study Lytic Granule Biogenesis in Cytotoxic T Lymphocytes

    The Retention Using Selective Hooks (RUSH) system allows for the synchronized release of one or more proteins of interest from a donor endomembrane compartment, usually the endoplasmic reticulum, and the subseque...

    Nagaja Capitani, Chiara Cassioli, Keerthana Ravichandran in The Immune Synapse (2023)

  18. Protocol

    High-Throughput Production and Optimization of Membrane Proteins After Expression in Mammalian Cells

    High-quality protein samples are an essential requirement of any structural biology experiment. However, producing high-quality protein samples, especially for membrane proteins, is iterative and time-consumin...

    Nadisha Gamage, Harish Cheruvara in Advanced Methods in Structural Biology (2023)

  19. Protocol

    The Origin of Left-Handed Poly[d(G-C)]

    The discovery of a reversible transition in the helical sense of a double-helical DNA was initiated by the first synthesis in 1967 of the alternating sequence poly[d(G-C)]. In 1968, exposure to high salt conce...

    Thomas M. Jovin in Z-DNA (2023)

  20. Protocol

    Visualizing and Quantifying mRNA Localization at the Invasive Front of 3D Cancer Spheroids

    Localization of mRNAs at the front of migrating cells is a widely used mechanism that functionally supports efficient cell movement. It is observed in single cells on two-dimensional surfaces, as well as in mu...

    Konstadinos Moissoglu, Stephen J. Lockett in Cell Migration in Three Dimensions (2023)

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