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Chapter and Conference Paper
GPU-MEME: Using Graphics Hardware to Accelerate Motif Finding in DNA Sequences
Discovery of motifs that are repeated in groups of biological sequences is a major task in bioinformatics. Iterative methods such as expectation maximization (EM) are used as a common approach to find such pat...
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Chapter and Conference Paper
Domain-Domain Interaction Identification with a Feature Selection Approach
The protein-protein interactions (PPIs) are generally assumed to be mediated by domain-domain interactions (DDIs). Many computational methods have been proposed based on this assumption to predict DDIs from av...