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    Chapter and Conference Paper

    Aligning Two Genomic Sequences That Contain Duplications

    It is difficult to properly align genomic sequences that contain intra-species duplications. With this goal in mind, we have developed a tool, called TOAST (two-way orthologous alignment selection tool), for p...

    Minmei Hou, Cathy Riemer, Piotr Berman, Ross C. Hardison… in Comparative Genomics (2009)

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    Chapter and Conference Paper

    Controlling Size When Aligning Multiple Genomic Sequences with Duplications

    For a genomic region containing a tandem gene cluster, a proper set of alignments needs to align only orthologous segments, i.e., those separated by a speciation event. Otherwise, methods for finding regions u...

    Minmei Hou, Piotr Berman, Louxin Zhang, Webb Miller in Algorithms in Bioinformatics (2006)