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Article
Open AccessContribution of RdDM to the ecotype-specific differential methylation on conserved as well as highly variable regions between Arabidopsis ecotypes
Several studies showed genome-wide DNA methylation during Arabidopsis embryogenesis and germination. Although it has been known that the change of DNA methylation mainly occurs at CHH context mediated by small RN...
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Article
Open AccessDevelopment of a Temperate Climate-Adapted indica Multi-stress Tolerant Rice Variety by Pyramiding Quantitative Trait Loci
Successful cultivation of rice (Oryza sativa L.) in many Asian countries requires submergence stress tolerance at the germination and early establishment stages. Two quantitative trait loci, Sub1 (conferring subm...
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Article
Open AccessProteomics and Metabolomics Studies on the Biotic Stress Responses of Rice: an Update
Biotic stresses represent a serious threat to rice production to meet global food demand and thus pose a major challenge for scientists, who need to understand the intricate defense mechanisms. Proteomics and ...
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Article
Open AccessRice protein-binding microarrays: a tool to detect cis-acting elements near promoter regions in rice
The present study showed that a rice (Oryza sativa)-specific protein-binding microarray (RPBM) can be applied to analyze DNA-binding motifs with a TF where binding is evaluated in extended natural promoter region...
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Article
Open AccessTwo nuclear effectors of the rice blast fungus modulate host immunity via transcriptional reprogramming
Pathogens utilize multiple types of effectors to modulate plant immunity. Although many apoplastic and cytoplasmic effectors have been reported, nuclear effectors have not been well characterized in fungal pat...
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Article
Open AccessNatural variations at the Stay-Green gene promoter control lifespan and yield in rice cultivars
Increased grain yield will be critical to meet the growing demand for food, and could be achieved by delaying crop senescence. Here, via quantitative trait locus (QTL) map**, we uncover the genetic basis und...
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Article
Open AccessOsbHLH058 and OsbHLH059 transcription factors positively regulate iron deficiency responses in rice
Subgroup IVc basic helix-loop-helix transcription factors OsbHLH058 and OsbHLH059 positively regulate major iron deficiency responses in rice in a similar but distinct manner, putatively under partial control ...
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Article
Erratum to: Defense Response to Pathogens Through Epigenetic Regulation in Rice
In the original publication, a statement of equal contribution was not included. The text should read as: Trung Viet Hoang and Kieu Thi Xuan Vo contributed equally to this work.
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Open AccessCrosstalk between diurnal rhythm and water stress reveals an altered primary carbon flux into soluble sugars in drought-treated rice leaves
Plants retain rhythmic physiological responses when adapting to environmental challenges. However, possible integrations between drought conditions and those responses have not received much focus, especially ...
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Article
Differential role for BiP3 in rice immune receptor-mediated resistance
Endoplasmic reticulum-bound chaperone luminal-binding protein 3 (BiP3) has been found to regulate the immunity mediated by the membrane-bound extracellular immune receptors Xa3/Xa26 and Xa21, that encode non-argi...
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Article
Open AccessTranscriptome analysis of leaf and root of rice seedling to acute dehydration
Water deficiency is one of the most serious worldwide problems for agriculture. Recently, it has become more serious and outspread, which urgently requires the production of drought-tolerant plants. Microarray...
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Article
Open AccessFSTVAL: a new web tool to validate bulk flanking sequence tags
Information about a transgene locus is one of the major concerns in transgenic research because expression of the transgene or a gene interrupted by the integration event could be affected. Thus, the flanking ...
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Article
Open AccessGenetic and Molecular Insights into the Enhancement of Rice Yield Potential
Rice is one of the most important global food crops and a primary source of calories for more than half of the world's population. Rice production increased steadily during the green revolution era primarily a...