5 Result(s)

Article

Other riffs on cooperation are already showing how well a wiki could work

John D. Osborne, Simon Lin, Warren A. Kibbe in Nature (2007)

Article

Annotating the human genome with Disease Ontology

The human genome has been extensively annotated with Gene Ontology for biological functions, but minimally computationally annotated for diseases.

John D Osborne, Jared Flatow, Michelle Holko, Simon M Lin, Warren A Kibbe… in BMC Genomics (2009)

Article

Comparative genome analysis of Mycoplasma pneumoniae

Mycoplasma pneumoniae is a common pathogen that causes upper and lower respiratory tract infections in people of all ages, responsible for up to 40 % of community-acquired pneumonias. ...

Li **ao, Travis Ptacek, John D. Osborne, Donna M. Crabb, Warren L. Simmons… in BMC Genomics (2015)

Article

CUILESS2016: a clinical corpus applying compositional normalization of text mentions

Traditionally text mention normalization corpora have normalized concepts to single ontology identifiers (“pre-coordinated concepts”). Less frequently, normalization corpora have used concepts with multiple id...

John D. Osborne, Matthew B. Neu, Maria I. Danila… in Journal of Biomedical Semantics (2018)

Article

Multi-task transfer learning for the prediction of entity modifiers in clinical text: application to opioid use disorder case detection

The semantics of entities extracted from a clinical text can be dramatically altered by modifiers, including entity negation, uncertainty, conditionality, severity, and subject. Existing models for determining...

Abdullateef I. Almudaifer, Whitney Covington… in Journal of Biomedical Semantics (2024)