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  1. Article

    Open Access

    Anchor extension: a structure-guided approach to design cyclic peptides targeting enzyme active sites

    Despite recent success in computational design of structured cyclic peptides, de novo design of cyclic peptides that bind to any protein functional site remains difficult. To address this challenge, we develop...

    Parisa Hosseinzadeh, Paris R. Watson, Timothy W. Craven in Nature Communications (2021)

  2. Article

    Open Access

    The influence of proline isomerization on potency and stability of anti-HIV antibody 10E8

    Monoclonal antibody (mAb) 10E8 recognizes a highly conserved epitope on HIV and is capable of neutralizing > 95% of circulating viral isolates making it one of the most promising Abs against HIV. Solution inst...

    Miklos Guttman, Neal N. Padte, Yaoxing Huang, Jian Yu in Scientific Reports (2020)

  3. No Access

    Article

    De novo design of potent and selective mimics of IL-2 and IL-15

    We describe a de novo computational approach for designing proteins that recapitulate the binding sites of natural cytokines, but are otherwise unrelated in topology or amino acid sequence. We use this strateg...

    Daniel-Adriano Silva, Shawn Yu, Umut Y. Ulge, Jamie B. Spangler, Kevin M. Jude in Nature (2019)