NMR Methods for Stereochemical Assignments

  • Reference work entry
  • First Online:
Handbook of Marine Natural Products

Abstract

Various NMR techniques have been developed that allow assignment of the relative and absolute configuration of many of the stereogenic carbons that occur in marine natural products. The application of chiral anisotropic reagents in conjunction with NMR analyses has been particularly useful for determining the absolute configuration of secondary alcohols, α-substituted primary amines, and α-substituted carboxylic acids. Derivatization of these functional groups with appropriate chiral reagents (e.g., MTPA) provides diastereomeric products that have diagnostic differences in their 1H chemical shifts. A recently developed technique known as J-based configurational analysis uses proton–proton couplings and 2- and 3-bond carbon–proton couplings (2,3 J CH) to assign the relative configuration of adjacent (1, 2) stereogenic carbons in conformationally flexible molecules. The J-based method involves comparing experimentally measured scalar couplings and NOE interactions with those predicted from this model to assign the relative configuration of the chiral methines. This technique is also applicable to oxygenated systems since there is a dihedral angle dependence for 2 J CH couplings between a proton and an adjacent carbon that bears an electronegative oxygen substituent. Strategies have also been developed to utilize J-based configurational analysis when there is a methylene separating the two stereogenic methine carbons, and even when conformational interconversion results in the coexistence of two major conformers.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Subscribe and save

Springer+ Basic
EUR 32.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or Ebook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Chapter
EUR 29.95
Price includes VAT (Germany)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
EUR 599.99
Price includes VAT (Germany)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Hardcover Book
EUR 534.99
Price includes VAT (Germany)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free ship** worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Similar content being viewed by others

References

  1. Dale JA, Mosher HS (1973) Nuclear magnetic resonance enantiomer reagents. Configurations via nuclear magnetic resonance chemical shifts of diastereomeric mandelate, O-methylmandelate, and α-methoxy-α-trifluoromethyphenylacetate (TPA) esters. J Am Chem Soc 95:512–519

    Article  CAS  Google Scholar 

  2. Sullivan GR, Dale JA, Mosher HS (1973) Correlation of configuration and 19 F chemical shifts of α-methoxy-α-trifluoromethyphenylacetate derivatives. J Org Chem 38:2143–2147

    Article  CAS  Google Scholar 

  3. Ohtani I, Kusumi T, Kashman Y, Kakisawa H (1991) High-field FT NMR applications of Mosher’s method. The absolute configurations of marine terpenoids. J Am Chem Soc 113:4092–4096

    Article  CAS  Google Scholar 

  4. Kusumi T, Ohtani II (1999) Determination of the absolute configuration of biologically active compounds by the modified Mosher’s method. In: Cooper R, Snyder JK (eds) The biology chemistry interface. Marcel Dekker, New York, pp 103–137

    Google Scholar 

  5. Seco JM, Quiñoá E, Riguera R (2000) The assignment of absolute configurations by NMR of arylmethoxyacetate derivates: is this methodology being correctly used? Tetrahedron Asymmetry 11:2781–2791

    Article  CAS  Google Scholar 

  6. Seco JM, Quiñoá E, Riguera R (2001) A practical guide for the assignment of the absolute configuration of alcohols, amines and carboxylic acids by NMR. Tetrahedron Asymmetry 12:2915–2925

    Article  CAS  Google Scholar 

  7. Seco JM, Quiñoá E, Riguera R (2004) The assignment of absolute configuration by NMR. Chem Rev 104:17–117

    Article  CAS  Google Scholar 

  8. Oku N, Takada K, Fuller RW, Wilson JA, Peach ML, Pannell LK, McMahon JB, Gustafson KR (2010) Isolation, structural elucidation, and absolute stereochemistry of enigmazole A, a cytotoxic phosphomacrolide from the Papua New Guinea marine sponge Cinachyrella enigmatica. J Am Chem Soc 132:10278–10285

    Article  PubMed  CAS  Google Scholar 

  9. Seco JM, Latypov S, Quiñoá E, Riguera R (1994) New chirality recognizing reagents for the determination of absolute stereochemistry and enantiomeric purity by NMR. Tetrahedron Lett 35:2921–2924

    Article  CAS  Google Scholar 

  10. Kusumi T, Takahashi H, Xu P, Fukushima T, Asakawa Y, Hashimoto T, Kan Y, Inouye Y (1994) New chiral anisotropic reagents, NMR tools to elucidate the absolute configurations of long-chain organic compounds. Tetrahedron Lett 35:4397–4400

    Article  CAS  Google Scholar 

  11. Williamson RT, Barrios Sosa AC, Mitra A, Seaton PJ, Weibel DB, Schroeder FC, Meinwald J, Koehn FE (2003) New silyl ether reagents for the absolute stereochemical determination of secondary alcohols. Org Lett 5:1745–1748

    Article  PubMed  CAS  Google Scholar 

  12. Nagai Y, Kusumi T (1995) New chiral anisotropic reagents for determining the absolute configuration of carboxylic acids. Tetrahedron Lett 36:1853–1856

    Article  CAS  Google Scholar 

  13. Ferreiro MJ, Latypov SK, Quiñoá E, Riguera R (2000) Assignment of the absolute configuration of α–chiral carboxylic acids by 1H NMR spectroscopy. J Org Chem 65:2658–2666

    Article  PubMed  CAS  Google Scholar 

  14. Matsumori N, Kaneno D, Murata M, Nakamura H, Tachibana K (1999) Stereochemical determination of acyclic structures based on carbon-proton spin-coupling constants. A method of configuration analysis for natural products. J Org Chem 64:866–876

    Article  PubMed  CAS  Google Scholar 

  15. Minch MJ (1994) Orientational dependence of vicinal proton-proton NMR coupling constants: the Karplus relationship. Concepts Magn Reson 6:41–56

    Article  CAS  Google Scholar 

  16. Bifulco G, Dambruoso P, Gomez-Paloma L, Riccio R (2007) Determination of relative configuration in organic compounds by NMR spectroscopy and computational methods. Chem Rev 107:3744–3779

    Article  PubMed  CAS  Google Scholar 

  17. Nilewski C, Geisser RW, Ebert M-O, Carreira EM (2009) Conformational and configurational analysis in the study and synthesis of chlorinated natural products. J Am Chem Soc 131:15866–15876

    Article  PubMed  CAS  Google Scholar 

  18. Dalvit C, Bovermann G (1995) Pulsed field gradient one-dimensional NMR selective ROE and TOCSY experiments. Magn Reson Chem 33:156–159

    Article  CAS  Google Scholar 

  19. Scott K, Keeler J, Van QN, Shaka AJ (1997) One-dimensional NOE experiments using pulsed field gradients. J Magn Reson 125:320–324

    Google Scholar 

  20. Griesinger C, Sørenson OW, Ernst RR (1986) Correlation of connected transitions by two-dimensional NMR spectroscopy. J Chem Phys 85:6837–6852

    Article  CAS  Google Scholar 

  21. Márquez B, Gerwick WH, Williamson RT (2001) Survey of NMR experiments for the determination of nJ (C, H) heteronuclear coupling constants in small molecules. Magn Reson Chem 39:499–530

    Article  Google Scholar 

  22. Uhrín D, Batta G, Hruby VJ, Barlow PN, Kövér KE (1998) Sensitivity- and gradient-enhanced hetero (ω1) half-filtered TOCSY experiment for measuring long-range heteronuclear coupling constants. J Magn Reson 130:155–161

    Article  PubMed  Google Scholar 

  23. Meissner A, Sørenson OW (2001) Measurement of J(HH) and long-range J(X, H) coupling constants in small molecules. Broadband XLOC and J-HMBC. Magn Reson Chem 39:49–52

    Article  CAS  Google Scholar 

  24. Williamson RT, Márquez BL, Gerwick WH, Kövér KE (2000) One- and two-dimensional gradient-selective HSQMBC NMR experiments for the efficient analysis of long-range heteronuclear coupling constants. Magn Reson Chem 38:265–273

    Article  CAS  Google Scholar 

  25. Bifulco G, Bassarello C, Riccio R, Gomez-Paloma L (2004) Quantum mechanical calculations of NMR J coupling values in the determination of relative configuration in organic compounds. Org Lett 6:1025–1028

    Article  PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Kirk R. Gustafson .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2012 Springer Science+Business Media B.V.

About this entry

Cite this entry

Gustafson, K.R. (2012). NMR Methods for Stereochemical Assignments. In: Fattorusso, E., Gerwick, W., Taglialatela-Scafati, O. (eds) Handbook of Marine Natural Products. Springer, Dordrecht. https://doi.org/10.1007/978-90-481-3834-0_9

Download citation

Publish with us

Policies and ethics

Navigation