Transfection, Spinfection, Exofection, and Luciferase Assays for Analysis of CCN Genes Expression Mechanism

  • Protocol
  • First Online:
CCN Proteins

Part of the book series: Methods in Molecular Biology ((MIMB,volume 2582))

Abstract

Cell communication network factor 2 (CCN2), also known as connective tissue growth factor (CTGF), is protein inducible in response to TGFβ/Smad signal or the transcriptional activity of matrix metalloproteinase 3 (MMP3). We discovered that MMP3 in exosomes is transferable to recipient cells and then translocates into cell nuclei to transactivate the CCN2/CTGF gene. Exosomes and liposomes enable molecular transfection to recipient cells in vitro and in vivo. These small vesicles are surrounded by lipid membranes and carry proteins, RNA, DNA, and small chemicals. Here we define the exosome-based transfection as “exofection.” In addition, spinfection increases the efficiencies of transfection, exofection, and viral infection, thus being compatible with various molecular transfer protocols. Here, we provide protocols, tips, and practical examples of transfection, spinfection, exofection, fluorescence microscopy, and luciferase assays to analyze the CCNs gene expression mechanisms.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Subscribe and save

Springer+ Basic
EUR 32.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or Ebook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Protocol
EUR 44.95
Price includes VAT (France)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
EUR 128.39
Price includes VAT (France)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
EUR 163.51
Price includes VAT (France)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free ship** worldwide - see info
Hardcover Book
EUR 232.09
Price includes VAT (France)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free ship** worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Similar content being viewed by others

References

  1. Eguchi T, Kubota S, Kawata K, Mukudai Y, Uehara J, Ohgawara T, Ibaragi S, Sasaki A, Kuboki T, Takigawa M (2010) Novel transcriptional regulation of CCN2/CTGF by nuclear translocation of MMP3. In: Perbal A, Takigawa M, Perbal B (eds) CCN proteins in health and disease. Springer, Netherlands, pp 255–264. https://doi.org/10.1007/978-90-481-3779-4_19

    Chapter  Google Scholar 

  2. Eguchi T, Kubota S, Kawata K, Mukudai Y, Uehara J, Ohgawara T, Ibaragi S, Sasaki A, Kuboki T, Takigawa M (2008) Novel transcription-factor-like function of human matrix metalloproteinase 3 regulating the CTGF/CCN2 gene. Mol Cell Biol 28(7):2391–2413. https://doi.org/10.1128/MCB.01288-07

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  3. Eguchi T, Kubota S, Kawata K, Mukudai Y, Ohgawara T, Miyazono K, Nakao K, Kondo S, Takigawa M (2007) Different transcriptional strategies for ccn2/ctgf gene induction between human chondrocytic and breast cancer cell lines. Biochimie 89(3):278–288. https://doi.org/10.1016/j.biochi.2006.12.006

    Article  CAS  PubMed  Google Scholar 

  4. Eguchi T, Kubota S, Kondo S, Shimo T, Hattori T, Nakanishi T, Kuboki T, Yatani H, Takigawa M (2001) Regulatory mechanism of human connective tissue growth factor (CTGF/Hcs24) gene expression in a human chondrocytic cell line, HCS-2/8. J Biochem 130(1):79–87. https://doi.org/10.1093/oxfordjournals.jbchem.a002965

    Article  CAS  PubMed  Google Scholar 

  5. Eguchi T, Taha EA (2021) Extracellular vesicle-associated moonlighting proteins: heat shock proteins and Metalloproteinases. In: Asea AAA, Kaur P (eds) Heat shock proteins, vol 22. Springer Nature, Cham, pp 1–18. https://doi.org/10.1007/7515_2020_25

    Chapter  Google Scholar 

  6. Taha EA, Sogawa C, Okusha Y, Kawai H, Oo MW, Elseoudi A, Lu Y, Nagatsuka H, Kubota S, Satoh A, Okamoto K, Eguchi T (2020) Knockout of MMP3 weakens solid tumor organoids and cancer extracellular vesicles. Cancers (Basel) 12(5). https://doi.org/10.3390/cancers12051260

  7. Okusha Y, Eguchi T, Tran MT, Sogawa C, Yoshida K, Itagaki M, Taha EA, Ono K, Aoyama E, Okamura H, Kozaki KI, Calderwood SK, Takigawa M, Okamoto K (2020) Extracellular vesicles enriched with moonlighting metalloproteinase are highly Transmissive, pro-tumorigenic, and trans-activates cellular communication network factor (CCN2/CTGF): CRISPR against cancer. Cancers (Basel) 12(4):doi:10.3390/cancers12040881

    Article  Google Scholar 

  8. Eguchi T, Kubota S, Kondo S, Kuboki T, Yatani H, Takigawa M (2002) A novel cis-element that enhances connective tissue growth factor gene expression in chondrocytic cells. Biochem Biophys Res Commun 295(2):445–451

    Article  CAS  PubMed  Google Scholar 

  9. Shimo T, Kubota S, Yoshioka N, Ibaragi S, Isowa S, Eguchi T, Sasaki A, Takigawa M (2006) Pathogenic role of connective tissue growth factor (CTGF/CCN2) in osteolytic metastasis of breast cancer. J Bone Miner Res 21(7):1045–1059. https://doi.org/10.1359/jbmr.060416

    Article  CAS  PubMed  Google Scholar 

  10. Eguchi T, Kubota S, Takigawa M (2017) Promoter analyses of CCN genes. In: Takigawa M (ed) CCN proteins: methods and protocols, vol 1489. Methods Mol Biol, 2016/10/14 edn. Humana Press, pp 177–185. https://doi.org/10.1007/978-1-4939-6430-7_18

    Chapter  Google Scholar 

  11. Kondo S, Kubota S, Eguchi T, Hattori T, Nakanishi T, Sugahara T, Takigawa M (2000) Characterization of a mouse ctgf 3 '-UTR segment that mediates repressive regulation of gene expression. Biochem Biophys Res Commun 278(1):119–124. https://doi.org/10.1006/bbrc.2000.3780

    Article  CAS  PubMed  Google Scholar 

  12. Kubota S, Kondo S, Eguchi T, Hattori T, Nakanishi T, Pomerantz RJ, Takigawa M (2000) Identification of an RNA element that confers post-transcriptional repression of connective tissue growth factor/hypertrophic chondrocyte specific 24 (ctgf/hcs24) gene: similarities to retroviral RNA-protein interactions. Oncogene 19(41):4773–4786. https://doi.org/10.1038/sj.onc.1203835

    Article  CAS  PubMed  Google Scholar 

  13. Kubota S, Mukudai Y, Hattori T, Eguchi T, Kondo S, Takigawa M (2001) Cell-type-specific trans-activation of herpes simplex virus thymidine kinase promoter by the human T-cell leukemia virus type I Tax protein. DNA Cell Biol 20(9):563–568. https://doi.org/10.1089/104454901317094972

    Article  CAS  PubMed  Google Scholar 

  14. Mukudai Y, Kubota S, Eguchi T, Kondo S, Nakao K, Takigawa M (2005) Regulation of chicken ccn2 gene by interaction between RNA cis-element and putative trans-factor during differentiation of chondrocytes. J Biol Chem 280(5):3166–3177. https://doi.org/10.1074/jbc.M411632200

    Article  CAS  PubMed  Google Scholar 

  15. Mukudai Y, Kubota S, Eguchi T, Kondo S, Nakao K, Takigawa M (2005) Post-transcriptional regulation of CCN2/CTGF gene expression during differentiation of chicken chondrocytes: involvement of a putative trans-factor which interacts with a cis-element in the 3 '-UTR of mRNA. FEBS J 272:284–285

    Google Scholar 

  16. Kondo S, Kubota S, Mukudai Y, Moritani N, Nishida T, Matsushita H, Matsumoto S, Sugahara T, Takigawa M (2006) Hypoxic regulation of stability of connective tissue growth factor/CCN2 mRNA by 3′-untranslated region interacting with a cellular protein in human chondrosarcoma cells. Oncogene 25(7):1099–1110. https://doi.org/10.1038/sj.onc.1209129

    Article  CAS  PubMed  Google Scholar 

  17. Ono K, Sogawa C, Kawai H, Tran MT, Taha EA, Lu Y, Oo MW, Okusha Y, Okamura H, Ibaragi S, Takigawa M, Kozaki K, Nagatsuka H, Sasaki A, Okamoto K, Calderwood SK, Eguchi T (2020) Triple knockdown of CDC37, HSP90-alpha and HSP90-beta diminishes extracellular vesicles-driven malignancy events and macrophage M2 polarization in oral cancer. J Extracell Vesicles 9(1):1–21. https://doi.org/10.1080/20013078.2020.1769373

    Article  CAS  Google Scholar 

  18. Lai CP, Tannous BA, Breakefield XO (2014) Noninvasive in vivo monitoring of extracellular vesicles. Methods Mol Biol 1098:249–258. https://doi.org/10.1007/978-1-62703-718-1_19

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  19. Lai CP, Mardini O, Ericsson M, Prabhakar S, Maguire C, Chen JW, Tannous BA, Breakefield XO (2014) Dynamic biodistribution of extracellular vesicles in vivo using a multimodal imaging reporter. ACS Nano 8(1):483–494. https://doi.org/10.1021/nn404945r

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  20. Eguchi T, Okusha Y, Lu Y, Ono K, Taha EA, Fukuoka S (2022) Comprehensive method for exosome isolation and proteome analysis for detection of CCN factors in/on exosomes. In: Takigawa M (ed) CCN proteins methods and protocols, 2nd edn. Humana Press, New York

    Google Scholar 

  21. Eguchi T, Prince TL, Tran MT, Sogawa C, Lang BJ, Calderwood SK (2019) MZF1 and SCAND1 reciprocally regulate CDC37 gene expression in prostate cancer. Cancers (Basel) 11(6):1–15. https://doi.org/10.3390/cancers11060792

    Article  CAS  Google Scholar 

  22. Namba Y, Sogawa C, Okusha Y, Kawai H, Itagaki M, Ono K, Murakami J, Aoyama E, Ohyama K, Asaumi J, Takigawa M, Okamoto K, Calderwood SK, Kozaki K, Eguchi T (2018) Depletion of lipid efflux pump ABCG1 triggers the intracellular accumulation of extracellular vesicles and reduces aggregation and tumorigenesis of metastatic cancer cells. Front Oncol 8(376):1–16. https://doi.org/10.3389/fonc.2018.00376

    Article  Google Scholar 

  23. Eguchi T, Sogawa C, Okusha Y, Uchibe K, Iinuma R, Ono K, Nakano K, Murakami J, Itoh M, Arai K, Fujiwara T, Namba Y, Murata Y, Shimomura M, Okamura H, Takigawa M, Nakatsura T, Kozaki K, Okamoto K, Calderwood SK (2018) Organoids with cancer stem cell-like properties secrete exosomes and HSP90 in a 3D NanoEnvironment. PLoS One 13(2):e0191109. https://doi.org/10.1371/journal.pone.0191109

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  24. Sogawa C, Eguchi T, Namba Y, Okusha Y, Aoyama E, Ohyama K, Okamoto K (2021) Gel-free 3D tumoroids with stem cell properties modeling drug resistance to cisplatin and Imatinib in metastatic colorectal cancer. Cell 10(2). https://doi.org/10.3390/cells10020344

  25. Sogawa C, Eguchi T, Tran MT, Ishige M, Trin K, Okusha Y, Taha EA, Lu Y, Kawai H, Sogawa N, Takigawa M, Calderwood SK, Okamoto K, Kozaki K (2020) Antiparkinson drug Benztropine suppresses tumor growth, circulating tumor cells, and metastasis by acting on SLC6A3/DAT and reducing STAT3. Cancers (Basel) 12(2):1–22

    Article  Google Scholar 

  26. Sogawa C, Eguchi T, Okusha Y, Ono K, Ohyama K, Iizuka M, Kawasaki R, Hamada Y, Takigawa M, Sogawa N, Okamoto K, Kozaki K (2019) A reporter system evaluates tumorigenesis, metastasis, beta-catenin/MMP regulation, and druggability. Tissue Eng Part A 25(19–20):1413–1425. https://doi.org/10.1089/ten.TEA.2018.0348

    Article  CAS  PubMed  Google Scholar 

  27. Eguchi T, Sheta M, Fujii M, Calderwood SK (2022) Cancer extracellular vesicles, tumoroid models, and tumor microenvironment. Semin Cancer Biol. https://doi.org/10.1016/j.semcancer.2022.01.003

  28. Nadolski MJ, Linder ME (2007) Protein lipidation. FEBS J 274(20):5202–5210. https://doi.org/10.1111/j.1742-4658.2007.06056.x

    Article  CAS  PubMed  Google Scholar 

  29. Lu Y, Eguchi T, Sogawa C, Taha EA, Tran MT, Nara T, Wei P, Fukuoka S, Miyawaki T, Okamoto K (2021) Exosome-based molecular transfer activity of macrophage-like cells involves viability of oral carcinoma cells: size exclusion chromatography and concentration filter method. Cell 10(6). https://doi.org/10.3390/cells10061328

  30. Eguchi T, Sogawa C, Ono K, Matsumoto M, Tran MT, Okusha Y, Lang BJ, Okamoto K, Calderwood SK (2020) Cell stress induced stressome release including damaged membrane vesicles and extracellular HSP90 by prostate cancer cells. Cell 9(3):1–24. https://doi.org/10.3390/cells9030755

    Article  CAS  Google Scholar 

  31. Okusha Y, Eguchi T (2022) Protocol for CRISPR/Cas genome editing for investigating cell communication network. In: Takigawa M (ed) CCN proteins methods and protocols, 2nd edn. Humana Press, New York

    Google Scholar 

  32. Seyama M, Yoshida K, Yoshida K, Fujiwara N, Ono K, Eguchi T, Kawai H, Guo J, Weng Y, Haoze Y, Uchibe K, Ikegame M, Sasaki A, Nagatsuka H, Okamoto K, Okamura H, Ozaki K (2020) Outer membrane vesicles of Porphyromonas gingivalis attenuate insulin sensitivity by delivering gingipains to the liver. Biochim Biophys Acta Mol basis Dis 1866(6):1–12. https://doi.org/10.1016/j.bbadis.2020.165731

    Article  CAS  Google Scholar 

  33. Fujiwara T, Eguchi T, Sogawa C, Ono K, Murakami J, Ibaragi S, Asaumi J, Calderwood SK, Okamoto K, Kozaki K (2018) Carcinogenic epithelial-mesenchymal transition initiated by oral cancer exosomes is inhibited by anti-EGFR antibody cetuximab. Oral Oncol 86:251–257. https://doi.org/10.1016/j.oraloncology.2018.09.030

    Article  CAS  PubMed  Google Scholar 

  34. Lai CP, Kim EY, Badr CE, Weissleder R, Mempel TR, Tannous BA, Breakefield XO (2015) Visualization and tracking of tumour extracellular vesicle delivery and RNA translation using multiplexed reporters. Nat Commun 6:7029. https://doi.org/10.1038/ncomms8029

    Article  CAS  PubMed  Google Scholar 

  35. Ono K, Okusha Y, Tran MT, Umemori K, Eguchi T (2022) Western blot protocol for analysis of CCN proteins and fragments in exosomes, vesicle-free fractions, and cells. In: Takigawa M (ed) CCN proteins methods and protocols, 2nd edn. Humana Press, New York

    Google Scholar 

  36. Kubota S, Mukudai Y, Kawaki H, Kondo S, Eguchi T, Sumiyoshi K, Ohgawara T, Shimo T, Takigawa M (2010) Nucleophosmin/B23: a multifunctional regulator that determines the fate of CCN2 mRNA. Ccn proteins in health and disease: an overview of the fifth international workshop on the Ccn family of genes. https://doi.org/10.1007/978-90-481-3779-4_4

  37. Mukudai Y, Kubota S, Kawaki H, Kondo S, Eguchi T, Sumiyoshi K, Ohgawara T, Shimo T, Takigawa M (2008) Posttranscriptional regulation of chicken ccn2 gene expression by nucleophosmin/B23 during chondrocyte differentiation. Mol Cell Biol 28(19):6134–6147. https://doi.org/10.1128/MCB.00495-08

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  38. Kondo S, Kubota S, Shimo T, Nishida T, Yosimichi G, Eguchi T, Sugahara T, Takigawa M (2002) Connective tissue growth factor increased by hypoxia may initiate angiogenesis in collaboration with matrix metalloproteinases. Carcinogenesis 23(5):769–776. https://doi.org/10.1093/carcin/23.5.769

    Article  CAS  PubMed  Google Scholar 

  39. Hara ES, Ono M, Eguchi T, Kubota S, Pham HT, Sonoyama W, Tajima S, Takigawa M, Calderwood SK, Kuboki T (2013) miRNA-720 controls stem cell phenotype, proliferation and differentiation of human dental pulp cells. PLoS One 8(12):e83545. https://doi.org/10.1371/journal.pone.0083545

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  40. Eguchi T, Calderwood SK, Takigawa M, Kubota S, Kozaki K (2017) Intracellular MMP3 promotes HSP gene expression in collaboration with Chromobox proteins. J Cell Biochem 118(1):43–51. https://doi.org/10.1002/jcb.25607

    Article  CAS  PubMed  Google Scholar 

Download references

Acknowledgments

T.E. was supported by JSPS Kakenhi, grant numbers 17K11642-TE, 20K09904-CS, 19H03817-MT, 20H03888-HN, 20K20611-MT, 20H03888-HN, 21H03119-TY, and 21K08902-HY. Y.O. was supported by JSPS Overseas Research Fellowship. E.A.T. was supported by the Egypt-Japan Education Partnership Grant. Y.L was supported by Rotary Yoneyama Memorial Foundation Fellowship. Figure 1 was generated using BioRender. The author thanks Shiro Fukuoka, Kazuko Satoshi Kubota, Kuniaki Okamoto, Kisho Ono, Mona Sheta, Chiharu Sogawa, Masaharu Takigawa, and Manh Tien Tran for useful information, materials, discussion, or experimentation.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Takanori Eguchi .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2023 The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature

About this protocol

Check for updates. Verify currency and authenticity via CrossMark

Cite this protocol

Eguchi, T., Lu, Y., Taha, E.A., Okusha, Y. (2023). Transfection, Spinfection, Exofection, and Luciferase Assays for Analysis of CCN Genes Expression Mechanism. In: Takigawa, M. (eds) CCN Proteins. Methods in Molecular Biology, vol 2582. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-2744-0_9

Download citation

  • DOI: https://doi.org/10.1007/978-1-0716-2744-0_9

  • Published:

  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-0716-2743-3

  • Online ISBN: 978-1-0716-2744-0

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics

Navigation