Knowledge-based analysis

ISSN: 1471-2105 (Online)

In this topical collection (215 articles)

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  1. Research Article

    Evaluation of knowledge graph embedding approaches for drug-drug interaction prediction in realistic settings

    Remzi Celebi, Huseyin Uyar, Erkan Yasar, Ozgur Gumus, Oguz Dikenelli… Article:726
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  2. Software

    BEST: a web server for brain expression Spatio-temporal pattern analysis

    Liyuan Guo, Wei Lin, Yidan Zhang, Wenhan Li, **g Wang Article:632
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  3. Methodology Article

    Improved high-dimensional prediction with Random Forests by the use of co-data

    Dennis E. te Beest, Steven W. Mes, Saskia M. Wilting… Article:584
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  4. Methodology article

    Hybrid attentional memory network for computational drug repositioning

    Jieyue He, **nxing Yang, Zhuo Gong, lbrahim Zamit Article:566
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  5. Research article

    Fast and scalable neural embedding models for biomedical sentence classification

    Asan Agibetov, Kathrin Blagec, Hong Xu, Matthias Samwald Article:541
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  6. Software

    FELLA: an R package to enrich metabolomics data

    Sergio Picart-Armada, Francesc Fernández-Albert, Maria Vinaixa… Article:538
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  7. Methodology Article

    Using variant databases for variant prioritization and to detect erroneous genotype-phenotype associations

    Bart J. G. Broeckx, Luc Peelman, Jimmy H. Saunders, Dieter Deforce… Article:535
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  8. Methodology Article

    PPR-SSM: personalized PageRank and semantic similarity measures for entity linking

    Andre Lamurias, Pedro Ruas, Francisco M. Couto Article:534
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  9. Methodology article

    Measures of co-expression for improved function prediction of long non-coding RNAs

    Rezvan Ehsani, Finn Drabløs Article:533
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  10. Research article

    Microbial phenomics information extractor (MicroPIE): a natural language processing tool for the automated acquisition of prokaryotic phenotypic characters from text sources

    ** Mao, Lisa R. Moore, Carrine E. Blank, Elvis Hsin-Hui Wu… Article:528
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  11. Research article

    Predicting rice blast disease: machine learning versus process-based models

    David F. Nettleton, Dimitrios Katsantonis, Argyris Kalaitzidis… Article:514
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  12. Methodology Article

    Unsupervised gene selection using biological knowledge : application in sample clustering

    Sudipta Acharya, Sriparna Saha, N. Nikhil Article:513
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  13. Database

    Avian Immunome DB: an example of a user-friendly interface for extracting genetic information

    Ralf C. Mueller, Nicolai Mallig, Jacqueline Smith, Lél Eöry… Article:502
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  14. Methodology article

    optimalFlow: optimal transport approach to flow cytometry gating and population matching

    Eustasio del Barrio, Hristo Inouzhe, Jean-Michel Loubes… Article:479
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  15. Methodology article

    A multi-omics approach for identifying important pathways and genes in human cancer

    H. Robert Frost, Christopher I. Amos Article:479
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  16. Research article

    Introducing Explorer of Taxon Concepts with a case study on spider measurement matrix building

    Hong Cui, Dongfang Xu, Steven S. Chong, Martin Ramirez… Article:471
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  17. Research article

    Representativeness of variation benchmark datasets

    Gerard C. P. Schaafsma, Mauno Vihinen Article:461
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  18. Methodology article

    A foundation for reference models for drug combinations with an application to Loewe’s reference model

    Wim De Mulder, Martin Kuiper Article:460
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  19. Research article

    Feature-based classification of human transcription factors into hypothetical sub-classes related to regulatory function

    Rezvan Ehsani, Shahram Bahrami, Finn Drabløs Article:459
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  20. Methodology Article

    A strategy for evaluating pathway analysis methods

    Chenggang Yu, Hyung Jun Woo, Xue** Yu, Tatsuya Oyama… Article:453
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