Abstract
The European badger (Meles meles) breeds plurally in lowland England and is important economically due to its link with bovine tuberculosis (Mycobacterium bovis) transmission. To understand disease transmission and facilitate effective management, it is vital to elucidate the social structure of badger groups. To improve parentage assignment and the discrimination of relatives, we isolated and characterised 21 polymorphic microsatellite loci in 24 individuals from Wytham Woods, Oxfordshire, UK. These 21 loci increased the discrimination power between full-siblings and half-siblings from 71 to 88%, when added to the existing 31 loci. Similarly, the combined non-exclusion probability increased from 3.0 × 10−8 to 5.8 × 10−13. Newly isolated Mel-592 (FR745854) was X-linked, based on the genotypes of 48 known-sex individuals and will enhance the genetic sex-ty** of badgers.
References
Armour JAL, Neumann R, Gobert S, Jeffreys AJ (1994) Isolation of human simple repeat loci by hybridization selection. Hum Mol Genet 3:599–605
Benjamini Y, Hochberg Y (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J Roy Statist Ser B 57:289–300
Bijlsma R, van de Vilet M, Pertoldi C, van Apeldoorn RC, van de Zande L (2000) Microsatellite primers from the Eurasian badger, Meles meles. Mol Ecol 9:2216–2217
Blouin MS (2003) DNA-based methods for pedigree reconstruction and kinship analysis in natural populations. Trends Ecol Evol 18:503–511
Carpenter PJ, Dawson DA, Greig C, Parham A, Cheeseman CL, Burke T (2003) Isolation of 39 polymorphic microsatellite loci and the development of a fluorescently labelled marker set for the Eurasian badger (Meles meles) (Carnivore: Mustelidae). Mol Ecol Notes 3:610–615
Carpenter PJ, Pope LC, Greig C, Dawson DA, Rogers LM, Erven K, Wilson GJ, Delahay RJ, Cheeseman CL, Burke T (2005) Mating system of the European badger, Meles meles, in a high density population. Mol Ecol 14:273–284
Domingo-Roura X, Macdonald DW, Roy MS, Marmi J, Terradas J, Rogers LM, Woodroffe R, Burke T, Wayne RK (2003) Confirmation of low genetic diversity and multiple breeding females in a social group of Eurasian badgers from microsatellite and field data. Mol Ecol 12:533–539
Dugdale HL, Macdonald DW, Pope LC, Burke T (2007) Polygynandry, extra-group paternity an multiple-paternity litters in European badger (Meles meles) social groups. Mol Ecol 16:5294–5306
Dugdale HL, Macdonald DW, Pope LC, Johnson PJ, Burke T (2008) Reproductive skew and relatedness in social groups of European badgers, Meles meles. Mol Ecol 16:5294–5306
Dugdale HL, Ellwood SA, Macdonald DW (2010) Alloparental behaviour and long-term costs of mothers tolerating other members of the group in a plurally breeding mammal. Anim Behav 80:719–733
Glenn TC, Schable NA (2005) Isolating microsatellite DNA loci. In: Zimmer EA, Roalson EH (eds) Methods in enzymology 395, molecular evolution: producing the biochemical data, Part B. Elsevier Academic Press Inc, San Diego, pp 202–222
Huck M, Frantz AC, Dawson DA, Burke T, Roper TJ (2008) Low genetic variability, female biased dispersal and high movement rates in an urban population of Eurasian badgers (Meles meles). J Appl Ecol 77:905–915
Kalinowski ST, Taper ML, Marshall TC (2007) Revising how the computer program CERVUS accommodates genoty** error increases success in paternity assignment. Mol Ecol 16:1099–1106
McDonald RA, Delahay RJ, Carter SP, Smith GC, Cheeseman CL (2008) Perturbing implications of wildlife ecology for disease control. Trends Ecol Evol 23:53–56
Pope LC, Butlin RK, Wilson GJ, Woodroffe R, Erven K, Conyers CM, Franklin T, Delahay RJ, Cheeseman CL, Burke T (2007) Genetic evidence that culling increases badger movement: implications for the spread of bovine tuberculosis. Mol Ecol 16:4919–4929
Raymond M, Rousset F (1995) GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. J Heredity 86:248–249
Rozen S, Skaletsky HJ (2000) PRIMER3 on the WWW for general users and for biologist programmers. In: Krawetz S, Misener S (eds) Bioinformatics methods and protocols: methods in molecular biology. Human Press, Totowa, pp 365–386
Toouli CD, Turner DR, Grist SA, Morley AA (2000) The effect of cycle number and target size on polymerase chain reaction amplification of polymorphic repetitive sequences. Anal Biochem 280:324–326
Walsh PS, Metzger DA, Higuchi R (1991) Chelex® 100 as a medium for simple extraction of DNA for PCR-based ty** from forensic material. Biotechniques 10:506–513
Wang J (2006) Informativeness of genetic markers for pair wise relationship and relatedness inference. Theor Popul Biol 70:300–321
Acknowledgments
We thank the Wytham Woods badger team, Andy Krupa, Alain Frantz and Yung Wa Sin for assistance. This research was supported by the Natural Environment Research Council Biomolecular Analysis Facility-Sheffield, The Peoples Trust for Endangered Species (DWM), The Ministry of Higher Education, Malaysia (GA), and the Netherlands Organisation for Scientific Research (Rubicon fellowship; HLD). Animal handling licences were: Natural England 20001537 and Home Office PPL30/1216.
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Annavi, G., Dawson, D.A., Horsburgh, G.J. et al. Characterisation of twenty-one European badger (Meles meles) microsatellite loci facilitates the discrimination of second-order relatives. Conservation Genet Resour 3, 515–518 (2011). https://doi.org/10.1007/s12686-011-9392-9
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DOI: https://doi.org/10.1007/s12686-011-9392-9