Log in

Wheat colonization by an Azospirillum brasilense ammonium-excreting strain reveals upregulation of nitrogenase and superior plant growth promotion

  • Regular Article
  • Published:
Plant and Soil Aims and scope Submit manuscript

Abstract

Aims

In this work, an ammonium-excreting strain (HM053) of A. brasilense was further characterized genetically and biochemically, and its abilities to colonize and promote wheat growth were determined.

Methods

Immunoblot, reverse transcription-qPCR, and DNA sequencing were used for HM053 characterization. To analyze wheat-A. brasilense interaction nifH::gusA fusions in the wild-type FP2 (FP2-7) and HM053 (HM053-36) backgrounds were employed.

Results

HM053 glutamine synthetase (GS) was not adenylylated in response to an ammonium shock or under any condition tested. Sequencing of the glnA gene revealed a substitution of a proline residue by a leucine at position 347 of the GS. Under axenic growth condition, HM053 was capable of colonizing the surface of wheat roots and increased by 30 and 49% the shoot and root dry weight, respectively, when compared with uninoculated plants, and by 30 and 31% when compared with the parental strain FP2. Although HM053-36 and FP2-7 showed GUS activity located mainly at lateral root emergence points, HM053-36 consistently showed stronger signals and expressed the nifH gene at a level 278 fold higher than strain FP2 in planta, according to qPCR data.

Conclusions

HM053, a spontaneous mutant in GS, increased wheat root and shoot dry weight when compared to the wild-type FP2. HM053 ability to excrete ammonium and fix nitrogen constitutively, even in the presence of high NH4 + concentration, could explain why this mutant has a higher potential to promote plant growth than FP2 and suggests HM053 as a potential nitrogen biofertilizer. However, HM053 should be tested under field conditions to evaluate its abilities to compete with indigenous microflora.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Subscribe and save

Springer+ Basic
EUR 32.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or Ebook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Price includes VAT (Canada)

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4

Similar content being viewed by others

Abbreviations

PGPR:

Plant-growth-promoting rhizobacterium (PGPR)

BNF:

Biological nitrogen fixation

GS:

Glutamine synthetase

GOGAT:

Glutamate synthase

GUS:

β-glucuronidase

CFU:

Colony forming units

D.a.i:

Days after inoculation

References

  • Abell LM, Schineller J, Keck PJ, Villafranca JJ (1995) Effect of metal-ligand mutations on phosphoryl transfer reactions catalyzed by Escherichia coli glutamine synthetase. Biochemistry 34:16695–16702

    Article  CAS  PubMed  Google Scholar 

  • Alves BJR, Boddey RM, Urquiaga S (2003) The success of BNF in soybean in Brazil. Plant Soil 252:1–9

    Article  CAS  Google Scholar 

  • Araújo LM, Monteiro RA, Souza EM et al (2004) GlnB is specifically required for Azospirillum brasilense NifA activity in Escherichia coli. Res Microbiol 155:491–495. doi:10.1016/j.resmic.2004.03.002

    Article  PubMed  Google Scholar 

  • Arcondéguy T, Jack R, Merrick M (2001) PII signal transduction proteins, pivotal players in microbial nitrogen control. Microbiol Mol Biol Rev 65:80–105. doi:10.1128/MMBR.65.1.80-105.2001

    Article  PubMed  PubMed Central  Google Scholar 

  • Arsene F, Kaminski PA, Elmerich C (1996) Modulation of NifA activity by PII in Azospirillum brasilense: evidence for a regulatory role of the NifA N-terminal domain. J Bacteriol 178:4830–4838

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Bottini R, Fulchieri M, Pearce D, Pharis RP (1989) Identification of gibberellins A1, A3, and iso-A3 in cultures of Azospirillum lipoferum. Plant Physiol 90:45–47

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Bradford MM (1976) A rapid and sensitive method for the quantification of microgram quantities of protein utilization: the principle of protein-dye binding. Anal Biochem 72:248–254

    Article  CAS  PubMed  Google Scholar 

  • Camilios-Neto D, Bonato P, Wassem R et al (2014) Dual RNA-seq transcriptional analysis of wheat roots colonized by Azospirillum brasilense reveals up-regulation of nutrient acquisition and cell cycle genes. BMC Genomics 15:378. doi:10.1186/1471-2164-15-378

    Article  PubMed  PubMed Central  Google Scholar 

  • Chaney L, Marbach P (1962) Modified reagents of urea and for determination ammonia. Clin Chem 8:130–132

    CAS  PubMed  Google Scholar 

  • Christiansen-Weniger C, Van Veen J (1991) Nitrogen fixation by Azospirillum brasilense in soil and rhizosphere under controlled environmental conditions. Biol Fertil Soils 12:100–106. doi:10.1007/BF00341483

    Article  CAS  Google Scholar 

  • Cohen AC, Bottini R, Piccoli PN (2007) Azospirillum brasilense Sp 245 produces ABA in chemically-defined culture medium and increases ABA content in arabidopsis plants. Plant Growth Regul 54:97–103. doi:10.1007/s10725-007-9232-9

    Article  Google Scholar 

  • Curatti L, Rubio LM (2014) Challenges to develop nitrogen-fixing cereals by direct nif-gene transfer. Plant Sci 225:130–137. doi:10.1016/j.plantsci.2014.06.003

    Article  CAS  PubMed  Google Scholar 

  • de Oliveira Pinheiro R, Boddey LH, James EK et al (2002) Adsorption and anchoring of Azospirillum strains to roots of wheat seedlings. Plant Soil 246:151–166

  • Dhalla AM, Li BIN, Alibhai ME et al (1994) Regeneration of catalytic activity of glutamine synthetase mutants by chemical activation: exploration of the role of arginines 339 and 359 in activity. Protein Sci 3:476–481

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Dobbelaere S, Okon Y (2007) The plant growth-promoting effect and plant responses. In: Elmerich C, Newton WE (eds) Associative and endophytic nitrogen-fixing bacteria and cyanobacterial associations. Springer, Dordrecht, pp. 145–170

    Chapter  Google Scholar 

  • Döbereiner J (1992) History and new perspectives of diazotrophs in association with non leguminous plants. Symbiosis 13:1–13

    Google Scholar 

  • Egener T, Hurek T, Reinhold-Hurek B (1998) Use of green fluorescent protein to detect expression of nif genes of Azoarcus sp. BH72, a grass-associated diazotroph, on rice roots. Mol Plant-Microbe Interact 11:71–75. doi:10.1094/MPMI.1998.11.1.71

    Article  CAS  PubMed  Google Scholar 

  • Elmerich C, Aubert JP (1971) Synthesis of glutamate by a glutamine: 2-oxo-glutarate amidotransferase (NADP oxidoreductase) in Bacillus megaterium. Biochem Biophys Res Commun 42:371–376

    Article  CAS  PubMed  Google Scholar 

  • Fadel-Picheth CMT, Souza EM, Rigo LU, Funayama S (1999) Regulation of Azospirillum brasilense nifA gene expression by ammonium and oxygen. FEMS Microbiol Lett 179:281–288

    Article  CAS  PubMed  Google Scholar 

  • Fallik E, Okon Y (1996) The response of maize (Zea mays) to Azospirillum inoculation in various types of soils in the field. World J Microbiol Biotechnol 12:511–515

    Article  CAS  PubMed  Google Scholar 

  • Fibach-Paldi S, Burdman S, Okon Y (2012) Key physiological properties contributing to rhizosphere adaptation and plant growth promotion abilities of Azospirillum brasilense. FEMS Microbiol Lett 326:99–108. doi:10.1111/j.1574-6968.2011.02407.x

    Article  CAS  PubMed  Google Scholar 

  • Fu H, Hartmann A, Lowery RG et al (1989) Posttranslational regulatory system for nitrogenase activity in Azospirillum spp. J Bacteriol 171:4679–4685

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • García de Salamone IE, Salvo LP, Escobar Ortega JS et al (2010) Field response of rice paddy crop to Azospirillum inoculation: physiology of rhizosphere bacterial communities and the genetic diversity of endophytic bacteria in different parts of the plants. Plant Soil 336:351–362. doi:10.1007/s11104-010-0487-y

    Article  Google Scholar 

  • Gauthier D, Elmerich C (1977) Relationship between glutamine synthetase and nitrogenase in Spirillum lipoferum. FEMS Microbiol Lett 2:101–104

    Article  CAS  Google Scholar 

  • Gerk LP, Gilchrist K, Kennedy IR (2000) Mutants with enhanced nitrogenase activity in hydroponic Azospirillum brasilense-wheat associations. Appl Environ Microbiol 66:2175–2184. doi:10.1128/AEM.66.5.2175-2184.2000

    Article  CAS  Google Scholar 

  • Hartmann A, Fu H, Burris RH (1986) Regulation of nitrogenase activity by ammonium chloride in Azospirillum spp. J Bacteriol 165:864–870

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Hoagland DR, Arnon DI (1950) The water-culture method for growing plants without soil. Calif Agric. Exp. Stn. Berkeley CA 347:1–32

    Google Scholar 

  • Huergo L, Souza E, Araujo M et al (2006) ADP-ribosylation of dinitrogenase reductase in Azospirillum brasilense is regulated by AmtB-dependent membrane sequestration of DraG. Mol Microbiol 59:326–337

    Article  CAS  PubMed  Google Scholar 

  • Huergo LF, Pedrosa FO, Muller-Santos M et al (2012) PII signal transduction proteins: pivotal players in post-translational control of nitrogenase activity. Microbiology 158:176–190. doi:10.1099/mic.0.049783-0

    Article  CAS  PubMed  Google Scholar 

  • Hungria M, Campo RJ, Souza EM, Pedrosa FO (2010) Inoculation with selected strains of Azospirillum brasilense and A. lipoferum improves yields of maize and wheat in Brazil. Plant Soil 331:413–425. doi:10.1007/s11104-009-0262-0

    Article  CAS  Google Scholar 

  • Hurek T, Reinhold-hurek B, Montagu MVAN, Kellenberger E (1994) Root colonization and systemic spreading of Azoarcus strain BH72 in grasses. J Bacteriol 176:1913–1923

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • James EK (2000) Nitrogen fixation in endophytic and associative symbiosis. Field Crops Res 65:197–209

    Article  Google Scholar 

  • Karnovsky M (1965) A formaldehyde-glutaraldehyde fixative of high osmolality for use in electron microscopy. J Cell Biol 27:137A–138A

    Google Scholar 

  • Koutroubas S, Papakosta D, Gagianas A (1998) The importance of early dry matter and nitrogen accumulation in soybean yield. Eur J Agron 9:1–10

    Article  Google Scholar 

  • Kupferschmied P, Maurhofer M, Keel C (2013) Promise for plant pest control: root-associated pseudomonads with insecticidal activities. Fron Plant Sci 4:287. doi:10.3389/fpls.2013.00287

    Google Scholar 

  • Latorre C, Lee JH, Spiller H, Shanmugam KT (1986) Ammonium ion-excreting cyanobacterial mutant as a source of nitrogen for growth of rice: a feasibility study. Biotechnol Lett 8:507–512. doi:10.1007/BF01025211

    Article  Google Scholar 

  • Liaw SH, Eisenberg D (1994) Structural model for the reaction mechanism of glutamine synthetase, based on five crystal structures of enzyme-substrate complexes. Biochemistry 33:675–681

    Article  CAS  PubMed  Google Scholar 

  • Livak KJ, Schmittgen TD (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method. Methods 25:402–408. doi:10.1006/meth.2001.1262

    Article  CAS  PubMed  Google Scholar 

  • Machado, Funayama S, Rigo LU, Pedrosa F (1991) Excretion of ammonium by Azospirillum brasilense mutants resistant to ethylenediamine. Can J Microbiol 37:549–553

    Article  CAS  Google Scholar 

  • Martínez-Morales L, Soto-Urzúa L, Baca B, Sánchez-Ahédo J (2003) Indole-3-butyric acid (IBA) production in culture medium by wild strain Azospirillum brasilense. Media FEMS Microbiol Lett 228:167–173. doi:10.1016/S0378-1097(03)00694-3

    Article  PubMed  Google Scholar 

  • Meers J, Tempest D (1970) “Glutamine(amide): 2-oxoglutarate amino transferase oxido-reductase (NADP)”, an enzyme involved in the synthesis of glutamate by some bacteria. J Gen Microbiol 64:187–194

    Article  CAS  PubMed  Google Scholar 

  • Mendes I, Hungria M, Vargas M (2003) Soybean response to starter nitrogen and Bradyrhizobium inoculation on Cerrado oxisol under no-tillage and conventional tillage systems. Rev Bras Cienc Solo 27:81–87

    Article  Google Scholar 

  • Moure VR, Danyal K, Yang Z-Y et al (2013) The nitrogenase regulatory enzyme dinitrogenase reductase ADP-ribosyltransferase (DraT) is activated by direct interaction with the signal transduction protein GlnB. J Bacteriol 195:279–286. doi:10.1128/JB.01517-12

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Okon Y, Vanderleyden J (1997) Root associatied Azospirillum species can stimulate plants. ASM News 63:364–370

    Google Scholar 

  • Ortiz-Marquez JCF, Do Nascimento M, delos Dublan MA, Curatti L (2012) Association with an ammonium-excreting bacterium allows diazotrophic culture of oil-rich eukaryotic microalgae. Appl Environ Microbiol 78:2345–2352. doi:10.1128/AEM.06260-11

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Pankievicz VCS, Do Amaral FP, Santos KFDN et al (2015) Robust biological nitrogen fixation in a model grass-bacterial association. Plant J 81:907–919. doi:10.1111/tpj.12777

    Article  CAS  PubMed  Google Scholar 

  • Pedrosa FO, Yates MG (1984) Regulation of nitrogen fixation (nif) genes of Azospirillum brasilense by nifA and ntrC (glnG) type genes. FEMS Microbiol Lett 55:95–101

    Article  Google Scholar 

  • Ryu C, Farag MA, Hu C et al (2004) Bacterial volatiles induce systemic resistance in Arabidopsis. Plant Physiol 134:1017–1026. doi:10.1104/pp.103.026583

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Schloter M, Hartmann A (1998) Endophytic and surface colonization of wheat roots (Triticum aestivum) by different Azospirillum brasilense strains studied with strain-specific monoclonal antibodies. Symbiosis 25:159–179

    Google Scholar 

  • Sij JW, Turner FT, Craigmiles JP (1979) “Starter nitrogen”; fertilization in soybean culture. Commun Soil Sci Plant Anal 10:1451–1457. doi:10.1080/00103627909366999

    Article  CAS  Google Scholar 

  • Spaepen S, Dobbelaere S, Croonenborghs A, Vanderleyden J (2008) Effects of Azospirillum brasilense indole-3-acetic acid production on inoculated wheat plants. Plant Soil 312:15–23. doi:10.1007/s11104-008-9560-1

    Article  CAS  Google Scholar 

  • Spiller H, Gunasekaran M (1990) Ammonia-excreting mutant strain of the cyanobacterium Anabaena variabilis supports growth of wheat. Appl Microbiol Biotechnol 33:477–480. doi:10.1007/BF00176670

    Article  CAS  Google Scholar 

  • Srivastava A, Tripathi AK (2006) Adenosine diphosphate ribosylation of dinitrogenase reductase and adenylylation of glutamine synthetase control ammonia excretion in ethylenediamine-resistant mutants of Azospirillum brasilense Sp7. Curr Microbiol 53:317–323. doi:10.1007/s00284-006-0058-x

    Article  CAS  PubMed  Google Scholar 

  • Steenhoudt O, Vanderleyden J (2000) Azospirillum, a free-living nitrogen-fixing bacterium closely associated with grasses: genetic, biochemical and ecological aspects. FEMS Microbiol Rev 24:487–506

    Article  CAS  PubMed  Google Scholar 

  • Tien TM, Gaskins MH, Hubbell DH (1979) Plant growth substances produced by Azospirillum brasilense and their effect on the growth of pearl millet (Pennisetum americanum L.) Appl. Environ Microbiol 37:1016–1024

    CAS  Google Scholar 

  • Van Dommelen A, Keijers V, Wollebrants A, Vanderleyden J (2003) Phenotypic changes resulting from distinct point mutations in the Azospirillum brasilense glnA Gene, encoding glutamine synthetase. Appl Environ Microbiol 7028:5699–5701. doi:10.1128/AEM.69.9.5699-5701.2003

    Article  Google Scholar 

  • Van Dommelen A, Croonenborghs A, Spaepen S, Vanderleyden J (2009) Wheat growth promotion through inoculation with an ammonium-excreting mutant of Azospirillum brasilense. Biol Fertil Soils 45:549–553. doi:10.1007/s00374-009-0357-z

    Article  CAS  Google Scholar 

  • Vessey JK (2003) Plant growth promoting rhizobacteria as biofertilizers. Plant Soil 255:571–586. doi:10.1023/A:1026037216893

    Article  CAS  Google Scholar 

  • Vitorino JC, Steffens MB, Machado HB et al (2001) Potential roles for the glnB and ntrYX genes in Azospirillum brasilense. FEMS Microbiol Lett 201:199–204. doi:10.1111/j.1574-6968.2001.tb10757.x

    Article  CAS  PubMed  Google Scholar 

  • Witmer MR, Palmieri-Young D, Villafranca JJ (1994) Probing the catalytic roles of n2-site glutamate residues in Escherichia coli glutamine synthetase by mutagenesis. Protein Sci 3:1746–1759

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Wood CC, Islam N, Ritchie RJ, Kennedy IR (2001) A simplified model for assessing critical parameters during associative 15N2 fixation between Azospirillum and wheat. Aust J Plant Physiol 28:969–974. doi:10.1071/PP01036

    Google Scholar 

Download references

Acknowledgements

This work was supported by the National Institute of Science and Technology on Biological Nitrogen Fixation (INCT/CNPq). We thank Roseli Prado, Valter A. Baura, and Marilza Doroty Lamour for the technical assistance.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to E. M. Souza.

Additional information

Responsible Editor: Euan K. James.

Electronic supplementary materials

.

Figure S1

(TIFF 83470 kb)

.

Figure S2

(TIFF 143630 kb)

.

Figure S3

(TIFF 147708 kb)

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Santos, K.F.D.N., Moure, V.R., Hauer, V. et al. Wheat colonization by an Azospirillum brasilense ammonium-excreting strain reveals upregulation of nitrogenase and superior plant growth promotion. Plant Soil 415, 245–255 (2017). https://doi.org/10.1007/s11104-016-3140-6

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s11104-016-3140-6

Keywords

Navigation