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Structural Organization of Precursors of Thermolysin-like Proteinases

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Abstract

The primary structures of the full-length precursors of thermolysin-like proteinases (TLPs) were systemically analyzed. Structural comparison of the precursor amino-terminal regions (ATRs) removed during maturation allowed us to divide the family into two groups: peptidases with short (about 50 amino acids) and long (about 200 amino acids) ATRs. The accumulation of mutations in the ATRs of both types proved to correlate with that in the catalytic domains. No classical signal peptides were identified in the short ATRs, but they contained a conserved PPL-motif near the initiation methionine. The functional role of the short ATRs and PPL-motif is currently unclear. The C-terminal regions (CTRs) of TLP precursors, which are often removed during maturation, too, are found in about a half of precursors with long ATRs, but occur more rarely in precursors with short ATRs. CTRs in TLP precursors contain previously identified conserved domains typical for many other proteins and likely underlie the interaction with high molecular weight substrates.

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Notes

  1. The current MEROPS database (release 7.70) was supplemented by new M4 peptidase sequences. Each of these sequences was analyzed individually. The results of the analysis are summarized in the footnotes to Table 1.

Abbreviations

TLP:

Thermolysin-like proteinase

ATR:

Amino-terminal region

CTR:

Carboxy-terminal region

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Acknowledgments

This work was supported by the Russian Foundation for Basic Research (project nos. 06-04-48678, 06-04-48690, and 06-04-08123).

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Authors and Affiliations

  1. Laboratory of Protein Engineering, Institute of Molecular Genetics, Russian Academy of Sciences, Kurchatov sq. 2, Moscow, 123182, Russia

    Ilya V. Demidyuk, Eugene V. Gasanov, Dina R. Safina & Sergey V. Kostrov

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  1. Ilya V. Demidyuk
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  2. Eugene V. Gasanov
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  3. Dina R. Safina
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  4. Sergey V. Kostrov
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Correspondence to Ilya V. Demidyuk.

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Demidyuk, I.V., Gasanov, E.V., Safina, D.R. et al. Structural Organization of Precursors of Thermolysin-like Proteinases. Protein J 27, 343–354 (2008). https://doi.org/10.1007/s10930-008-9143-2

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