Abstract
Biological soil disinfestations (BSDs) were developed separately in Japan and in The Netherlands as an alternative to chemical fumigations. In Japan, it was developed based on the knowledge of irrigated paddy rice and upland crop rotation system that was rather tolerant of soil-borne disease development. The methods consist of application of easily decomposable organic matter, irrigation, and covering the soil surface with plastic film, thereby inducing anaerobic (reductive) soil conditions and suppressing many soil-borne pests including fungi, bacteria, nematodes, and weeds. The methods are widely used by organic farmers in the area where residences and agricultural fields are intermingled. To note one advantage of these methods, maintenance of soil suppressiveness to Fusarium wilt of tomato was suggested, while soil treated with chloropicrin became conducive to the disease. Suppression of soil-borne fungal pathogens by BSDs might be attributed to anaerobicity and high temperature, organic acids generated, and metal ions released into soil water. Contributions of respective factors to suppression of respective pathogens might be diverse. Presumably, these factors might vary on the fungal community structure in BSD-treated soil. These factors also work in paddy fields. Therefore, the BSDs developed in Japan are probably a method to raise the efficacy of paddy–upland rotation through intensive organic matter application and through maintenance of a strongly anaerobic (reductive) soil condition.
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References
Blackwell KJ, Tobin JM, Avery SV (1998) Manganese toxicity towards Saccharomyces cerevisiae: dependence on intracellular and extracellular magnesium concentrations. Appl Microbiol Biotechnol 49:751–757
Blok WJ, Lamers JG, Termorshuizen AJ, Bollen GJ (2000) Control of soilborne plant pathogens by incorporating fresh organic amendments followed by tar**. Phytopathol 90:253–259
Bonanomi G, Antignani V, Pane C, Scala F (2007) Suppression of soilborne fungal diseases with organic amendments. J Plant Pathol 89:311–324
Butler DM, Rosskopf EN, Kokalis-Burelle N, Albano JP, Muramoto J, Shennan C (2012) Exploring warm-season cover crop as carbon sources for anaerobic soil disinfestation (ASD). Plant Soil 355:149–165
Dobbs CH, Gash MJ (1965) Microbial and residual mycostasis in soils. Nature 207:1354–1356
Ebihara Y, Uematsu S, Nomiya S (2010) Control of Verticillium dahliae at a strawberry nursery by paddy–upland rotation. J Gen Plant Pathol 76:7–20
Fakih M, Chatellier X, Davranche M, Dia A (2008) Bacillus subtilis bacteria hinder the oxidation and hydrolysis of Fe2+ ions. Environ Sci Technol 42:3194–3200
Fennimore SA, Serohijos R, Samtani JB, Ajwa HA, Subbarao KV, Martin, FN, Daugovish O, Legard D. Browne GT, Muramoto J, Shennan C, Klonsky, K (2012) Methods to facilitate the adoption of alternatives to methyl bromide soil fumigation by California strawberry growers. Calif. Agric.: in press
Foy CD, Chaney RL, White MC (1978) The physiology of metal toxicity in plants. Annu Rev Plant Physiol 29:511–566
Gamliel A, Austerweil M, Kritzman G (2000) Non-chemical approach to soilborne pest management—organic amendments. Crop Prot 19:847–853
Goud JC, Termorshuizen AJ, Blok WJ, van Bruggen (2004) Long-term effect of biological soil disinfestation on Verticillium wilt. Plant Dis 88:688–694
Hashimoto K (1989) Studies of Verticillium wilt of eggplant (in Japanese with English summary). Bull Saitama Hortic Exp Stn 2:1–110
Katan J, Greenberger H, Alon H, Gristein A (1976) Solar heating by polyethylene mulching for the control of disease caused by soil-borne pathogens. Phytopathol 66:683–688
Katan J (2000) Physical and cultural methods for the management of soil-borne pathogens. Cropp Prot 19:725–731
Katase M, Kubo C, Ushio S, Ootsuka E, Takeuchi T, Mizukubo T (2009) Nematicidal activity of volatile fatty acids generated from wheat bran in reductive soil disinfestation. Nematol Res 39:53–62
Kobara Y, Uematsu S, Tanaka-Miwa C, Sato R, Sato M (2011) Possibility of the new soil fumigation technique with ethanol solution. In: Obenaug GL (ed) Proc. 2007 Annu. Int. Res. Conf. Methyl Bromide Alternatives and Emissions Reductions, pp 74.1-74.2
Kodama T, Fukui T (1982) Application of solar heating with plastic-film mulching in the out-door field for control of Fusarium wilt of strawberry (in Japanese with English summary). Ann Phytopathol Soc Jpn 48:699–701
Kodama T, Miyamoto S, Miyagawa I, Shiga Y (1976) Soil disinfection by solar heat inside closed green house in summer (in Japanese). Agric Hortic 51:889–894
Konagai K, Sakamoto K, Usami T, Amemiya Y, Shishido M (2005) Effect of wild oats green manure on soil microflora and diseases of tomato (in Japanese with English summary). Jpn J Phytopathol 71:101–110
Lamers JG, Runia WT, Molendijk LPG, Bleeker PO (2010) Perspectives of anaerobic soil disinfestation. Acta Hort (ISHS) 883:277–283
Matsuda A, Okazaki K, Shimonagane K (1972) Change of soil fungistasis and incidence of Fusarium wilt of cucumber induced by paddy–upland rotation (in Japanese). Jpn J Phytopathol 38:190–191
Mazzola M, Shennan C, Muramoto J (2012) Application sequence and soil biology influence anaerobic soil disinfestation induced disease suppressio. In: Proc. 2012 Annu. Int. Res. Conf. Methyl Bromide Alternatives and Emissions Reduction, pp 57.1–57.3
Momma N, Kobara Y (2012) Effect of biological soil disinfestation on soil fungi. In: Obenaug GL (ed) Proc. 2012 Annu. Int. Res. Conf. Methyl Bromide Alternatives and Emissions Reductions, pp 54.1-54.3
Momma N (2011) New soil disinfestation technique with low concentration ethanol (in Japanese). Plant Prot 65:486–490
Momma N, Kobara Y, Momma M (2011) Fe2+ and Mn2+, potential agents to induce suppression of Fusarium oxysporum for biological soil disinfestation. J Gen Plant Pathol 77:331–335
Momma N, Momma M, Kobara Y (2010) Biological soil disinfestation using ethanol: effect on Fusarium oxysporum f. sp. lycopersici and soil microorganisms. J. Gen. Plant Pathol 76:336–344
Momma N, Usami T, Shishido M (2007) Detection of Clostridium sp. inducing biological soil disinfestation (BSD) and suppression of pathogens causing Fusarium wilt and bacterial wilt of tomato by gases evolved during BSD (in Japanese with English summary). Soil Microorg 61:3–9
Momma N, Yamamoto K, Simandi P, Shishido M (2006) Role of organic acids in the mechanisms of biological soil disinfestation (BSD). J. Gen. Plant Pathol. 72:247–252
Momma N, Usami T, Amemiya Y, Shishido M (2005) Factors involved in the suppression of Fusarium oxysporum f. sp. lycopersici by soil reduction (in Japanese with English summary). Soil Microorg 59:27–33
Morimoto S, Hoshino Y (2008) Methods for analysis of soil communities by PCR-DGGE. 1. Bacterial and fungal communities (in Japanese). Soil Microorg. 62:63–68 http://www.niaes.affrc.go.jp/project/edna/edna_jp/manual_bacterium.pdf
Mowlick S, Takehara T, Kaku N, Ueki K, Ueki A (2012) Proliferation of diversified clostridial species during biological soil disinfestation incorporated with plant biomass under various conditions. Appl Microbiol Biotechnol. doi:10.1007/s00253-012-4532-z
Murata A, Hidaka T, Kanda K, Kato F (2008) Bactericidal action of iron (II) and mechanism of the action (in Japanese with English summary). Bull Fac Agric Saga Univ 93:141–155
Okazaki H, Nose K (1986) Acetic acid and n-butyric acid as causal agents of fungicidal activity of glucose-amended flooded soil. Ann Phytopathol Soc Jpn 52:384–393
Pizano M, Besri M, Marcotte M, Porter I (2011) United Nations Environment Programme (UNEP) 2010 report of the Methyl Bromide Technical Potions Committee. 2010 assessment. http://ozone.unep.org/teap/Reports/MBTOC/MBTOC-Assesment-Report-2010.pdf
Pullman GS, DeVay JE (1982) Effect of soil flooding and paddy rice culture on the survival of Verticillium dahliae and incidence of Verticillium wilt in cotton. Phytopathol 72:1285–1289
Rosskopf EN, Lola;s-Burelle N (2010) Development of anaerobic soil disinfestation for Florida vegetable and flower production. In: Proc. 2010 Annu. Int. Res. Conf. Methyl Bromide Alternatives and Emissions Reduction, pp 84.1-84.2
Shennan C, Muramoto J, Baird G, Oleg Daugovish O, Koike S, Bolda M (2011) Anaerobic soil disinfestation: California. In: Proc. 2011 Annu. Int. Res. Conf. Methyl Bromide Alternatives and Emissions Reduction, pp 44.1-44.4
Shennan, C., Muramoto, J., Bolda, M., Koike, S. T., Daugovish, O., Rosskopf, E., Kokalis-Burelle, N., and Klonsky, K. (2007) Optimizing anaerobic soil disinfestation: an alternative to soil fumigation? In: Proc. 2007 Annu. Int. Res. Conf. Methyl Bromide Alternatives and Emissions Reduction, pp 40.1-40.4
Shinmura A (2000) Causal agent and control of root rot of Welsh onion (in Japanese). PSJ Soilborn Dis Work Rep 20:133–143
Sonku Y, Kita K (1979) A study on disease control by water. VII. Effect of organic amendment and tar** on soil Eh and disease incidence of Fusarium wilt of tomato (in Japanese). Jpn J Phytopathol 45:524–525
Takai Y, Kamura T (1966) The mechanism or reduction in waterlogged paddy soil. Folia Microbiol 11:304–313
Uchida T, Asari S, Ashizawa T (1981) Control of tomato Verticillium wilt by rotation with paddy field (in Japanese). In: Proc. the Kanto-Tosan Plant Prot. Soc. 28:48
Uematsu S, Tanaka-Miwa C, Sato R, Kobara Y, Sato M (2007) Ethyl alcohol as a promising material of reductive soil disinfestation for controlling root knot nematode and soilborne plant diseases. In: Obenauf GL (ed) Proc. 2007 Ann. Inter. Res. Conf. Methyl Bromide Alternatives and Emissions Reductions, pp 75.1–75.3
Watanabe B (1973) Effect of flooding on Rhizoctonia solani (in Japanese). Jpn J Phytopathol 39:200
Yokoyama T, Oki H, Ushio S, Suzuki T, Oizumi T (2011) Effects of soil cover term and/or treatment concentrations of ethanol on disinfection with low concentration of ethanol against cucumber black rot (in Japanese). Jpn J Phytopathol 77:178
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We thank Dr. N. Matsumoto for helpful discussion and polishing this paper. This research work was supported in part by the research and development projects for promoting new policy of agriculture, forestry and fisheries, funded by the Ministry of Agriculture, Forestry and Fisheries of Japan.
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Momma, N., Kobara, Y., Uematsu, S. et al. Development of biological soil disinfestations in Japan. Appl Microbiol Biotechnol 97, 3801–3809 (2013). https://doi.org/10.1007/s00253-013-4826-9
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DOI: https://doi.org/10.1007/s00253-013-4826-9