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A novel approach for high-level expression and purification of GST-fused highly thermostable Taq DNA polymerase in Escherichia coli

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Abstract

Polymerases are enzymes that synthesize long chains or polymers of nucleic acids including DNA or RNA from nucleotides. They assemble nucleic acids by copying a DNA or RNA template strand using base-pairing interactions. One of the polymerase enzymes, Taq DNA polymerase, originally isolated from Thermus aquaticus (Taq) is a widely used enzyme in molecular biology so far. The thermostable properties of this enzyme have contributed majorly to the specificity, automation, and efficacy of the polymerase chain reaction (PCR), making it a powerful tool for today’s molecular biology researches across the globe. The purification of Taq DNA polymerase from the native host results in low yield, more labor and time consumption. Therefore, many studies have been previously conducted to obtain this enzyme using alternative hosts. So far, all the existing methodologies are more laborious, time-consuming and require heavy expense. We used a novel approach to purify the enzyme with relatively high efficiency, yield and minimum time consumption using Escherichia coli (E. coli) as an alternative host. We cloned a 2500 base pair Taq DNA polymerase gene into pGEX-4T-1 vector, containing a GST-tag, downstream of tac promoter and overexpressed it using isopropyl β-d-1-thiogalactopyranoside (IPTG) as an inducer. The enzyme was efficiently purified using novel chromatography approaches and was used in routine PCR assays in our laboratory. Our findings suggest a novel approach to facilitate the availability of polymerases for molecular and diagnostic studies. In the future, it may be used for the purification of other recombinant peptides or proteins used in structural biology and proteomics-based researches.

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References

  • Arezi B, **ng W, Sorge JA, Hogrefe HH (2003) Amplification efficiency of thermostable DNA polymerases. Anal Biochem 322(2):226–235

    Google Scholar 

  • Bernad A, Zaballos A, Salas M, Blanco L (1987) Structural and functional relationships between prokaryotic and eukaryotic DNA polymerases. EMBO J 6(13):4219–4225

    CAS  PubMed  PubMed Central  Google Scholar 

  • Brock TD, Freeze H (1969) Thermus aquaticus gen. n. and sp. n., a nonsporulating extreme thermophile. J Bacteriol 98(1):289–297

    CAS  PubMed  PubMed Central  Google Scholar 

  • Brown DD, Stern R (1974) Methods of gene isolation. Annu Rev Biochem 43(1):667–693

    CAS  PubMed  Google Scholar 

  • Brutlag D, Atkinson MR, Setlow P, Kornberg A (1969) An active fragment of DNA polymerase produced by proteolytic cleavage. Biochem Biophys Res Commun 37(6):982–989

    CAS  PubMed  Google Scholar 

  • Bu Z, Biehl R, Monkenbusch M, Richter D, Callaway DJ (2005) Coupled protein domain motion in Taq polymerase revealed by neutron spin-echo spectroscopy. Proc Natl Acad Sci USA 102(49):17646–17651

    CAS  PubMed  Google Scholar 

  • Buttin G, Kornberg A (1966) Enzymatic synthesis of deoxyribonucleic acid. XXI. Utilization of deoxyribonucleotide triphosphates by Escherichia coli cells. J Biol Chem 241(22):5419–5427

    CAS  PubMed  Google Scholar 

  • Chen S, Zheng X, Cao H, Jiang L, Liu F, Sun X (2015) A simple and efficient method for extraction of Taq DNA polymerase. Electron J Biotechnol 18(5):343–346

    Google Scholar 

  • Chien A, Edgar DB, Trela JM (1976) Deoxyribonucleic acid polymerase from the extreme thermophile Thermus aquaticus. J Bacteriol 127(3):1550–1557

    CAS  PubMed  PubMed Central  Google Scholar 

  • Desai UJ, Pfalle PK (1995) Single step purification of a thermostable DNA polymerase expressed in Escherichia coli. Biotechniques 19(5):780–784

    CAS  PubMed  Google Scholar 

  • Engelke DR, Krikos A, Bruck ME, Ginsburg D (1990) Purification of Thermus aquaticus DNA polymerase expressed in Escherichia coli. Anal Biochem 191(2):396–400

    CAS  PubMed  Google Scholar 

  • Farazmandfar T, Rafiei A, Hashemi-Sotehoh MB, Valadan R, Alavi M, Moradian F (2013) A simplified protocol for producing Taq DNA polymerase in biology laboratory. Res Moler Med 1(2):23–26

    CAS  Google Scholar 

  • Ferralli P, Egan JD, Erickson FL (2007) Making Taq DNA polymerase in the undergraduate biology laboratory. Bios 78(2):69–74

    CAS  Google Scholar 

  • Fore J, Wiechers IR, Deegan RC (2006) The effects of business practices, licensing, and intellectual property on development and dissemination of thepolymerase chain reaction, case study. J Biomed Discov Collab 1(1):7

    PubMed  PubMed Central  Google Scholar 

  • Golayj S, Tolami HF, Riahifar V, Toulami S, Jorshari S, Nazemi A (2014) Expression and simple purification of cold sensitive I707L modified Taq DNA Polymerase sequence in Escherichia coli. Adv Stud Biol 6(4):137–148

    Google Scholar 

  • Gordon SM, Deng J, Lu LJ, Davidson WS (2010) Proteomic characterization of human plasma high density lipoprotein fractionated by gel filtration chromatography. J Proteome Res 9(10):5239–5249

    CAS  PubMed  PubMed Central  Google Scholar 

  • Guatelli JC, Gingeras TR, Richman DD (1989) Nucleic acid amplification invitro: detection of sequences with low copy numbers and application to diagnosis of human immunodeficiency virus type 1 infection. Clin Microbiol Rev 2(2):217–226

    CAS  PubMed  PubMed Central  Google Scholar 

  • Harper S, Speicher DW (2011) Purification of proteins fused to glutathione S-transferase. In: Walls D, Loughran S (eds) Protein chromatography. Methods in molecular biology (Methods and protocols), vol 681. Humana Press, Totowa, pp 259–280

    Google Scholar 

  • Holland PM, Abramson RD, Watson R, Gelfand DH (1991) Detection of specific polymerase chain reaction product by utilizing the 5′–3′ exonuclease activity of Thermus aquaticus. Proc Natl Acad Sci USA 88(16):7276–7280

    CAS  PubMed  Google Scholar 

  • Ito J, Braithwaite DK (1991) Compilation and alignment of DNA polymerases. Nucleic Acids Res 19(15):4045–4057

    CAS  PubMed  PubMed Central  Google Scholar 

  • Kornberg T, Gefter ML (1972) Purification and catalytic properties of deoxyribonucleic acid polymerase III. J Biol Chem 247(17):5369–5375

    CAS  PubMed  Google Scholar 

  • Lawyer FC, Stoffel S, Saiki RK, Myambo K, Drummond R, Gelfand D (1989) Isolation, characterization, and expression in Escherichia coli of the DNA polymerase gene from Thermus aquaticus. J Biol Chem 264(11):6427–6437

    CAS  PubMed  Google Scholar 

  • Lawyer FC, Stoffel S, Saiki RK, Chang SY, Landre PA, Abramson RD, Gelfand DH (1993) High-level expression, purification, and enzymatic characterization of full-length Thermus aquaticus DNA polymerase and atruncated form deficient in 5′ to 3′ exonuclease activity. Genome Res 2(4):275–287

    CAS  Google Scholar 

  • Li Y, Korolev S, Waksman G (1998) Crystal structures of open and closed forms of binary and ternary complexes of the large fragment of Thermus aquaticus DNA polymerase I: structural basis for nucleotide incorporation. EMBO J 17(24):7514–7525

    CAS  PubMed  PubMed Central  Google Scholar 

  • Livingston DM, Richardson CC (1975) Deoxyribonucleic acid polymerase III of Escherichia coli. Purification and properties. J Biol Chem 250(2):461–469

    CAS  PubMed  Google Scholar 

  • Lo YM, Chan KC (2006) Introduction to the polymerase chain reaction. In: Methods in molecular biology, pp 1–10

  • Mishra N, Kumar A (2010) Cloning and chara cloning and characterization of isolation of isolation of isolated taq dna polymerase gene from phaymerase gene from phaymerase gene from phage. Cloning 5(1):7–11

    CAS  Google Scholar 

  • Mullis KB (1990) The unusual origin of the polymerase chain reaction. Sci Am 262(4):56–61

    CAS  PubMed  Google Scholar 

  • Mullis K, Faloona F, Scharf S, Saiki R, Horn G, Erlich H (1986) Specific enzymatic amplification of DNA in vitro: the polymerase chain reaction. Cold Spring Harb Symp Quant Biol 51(1):263–373

    CAS  PubMed  Google Scholar 

  • Nayak KK, Tiwari A, Malviya SN (2011) Production of taqpolymerase from e. Coli: a tremendous approach of cloning and expression of taqpolymerase-i gene in e. Coli.

  • Pormehr LA, Vishkaei MN, Mozafarzadeh Z, Birgani SA, Sariri R, Gharibkhani M, Majid AM, Majid AS, Khadeer Ahamed MB, Asif M (2013) Isolation, characterization of novel fragment of a gene klentaq1 which encodes thermus aquaticus dna polymerase and its thermostability studiesin escherichia coli. Sci Int 25(4)

  • Pluthero FG (1993) Rapid purification of high-activity Taq DNA polymerase. Nucleic Acid Res 21(20):4850–14851

    CAS  PubMed  Google Scholar 

  • Protzko RJ, Erickson FL (2012) A scaled-down and simplified protocol for purifying recombinant Taq dna polymerase. BIOS 83(1):8–11

    CAS  Google Scholar 

  • Roayaei M, Galehdari H (2008) Cloning and Expression of Thermus aquaticus DNA polymerase in Escherichia coli. Jundishapur. J Microbiol 1(1):1

    Google Scholar 

  • Saiki RK, Scharf S, Faloona F, Mullis KB, Horn GT, Erlich HA, Arnheim N (1985) Enzymatic amplification of beta-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anemia. Science 230(4732):1350–1354

    CAS  PubMed  Google Scholar 

  • Saiki RK, Gelfand DH, Stoffel S, Higuchi R, Horn G, Mullis KB, Erlich HA (1988a) Primer-directed enzymatic amplification of DNA with a thermo -stable DNA polymerase. Science 239(4839):487–489

    CAS  PubMed  Google Scholar 

  • Saiki RK, Gelfand DH, Stoffel S, Scharf SJ, Higuchi R, Horn GT, Mullis KB, Erlich HA (1988b) Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science 239(4839):487–491

    CAS  PubMed  Google Scholar 

  • Sambrook J, Russell DW (2001) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press

  • Tessman I, Kennedy MA (1994) DNA polymerase II of Escherichia coli in the bypass of abasic sites in vivo. Genetics 136(2):439–448

    CAS  PubMed  PubMed Central  Google Scholar 

  • Tindall KR, Kunkel TA (1988) Fidelity of DNA synthesis by the Thermusaquaticus DNA polymerase. Biochemistry 27(16):6008–6013

    CAS  PubMed  Google Scholar 

  • Yang Z, Ding Y, Zhang Y, Liu F (2008) Rapid purification of truncated Taq DNA polymerase Stoffel fragment by boiling lysis of bacterial expression cultures. Biotechnol Appl Biochem 50(2):71–75

    CAS  PubMed  Google Scholar 

Download references

Acknowledgements

This work was supported by the Institute of Biotechnology and Genetic Engineering (IBGE), The University of Agriculture Peshawar, Pakistan. We are also thankful to the directorate of Science and Technology and Higher Education Commission Pakistan for additional support.

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Correspondence to Rahman Ud Din or Asad Jan.

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Communicated by Erko Stackebrandt.

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Din, R.U., Khan, M.I., Jan, A. et al. A novel approach for high-level expression and purification of GST-fused highly thermostable Taq DNA polymerase in Escherichia coli. Arch Microbiol 202, 1449–1458 (2020). https://doi.org/10.1007/s00203-020-01860-9

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