Log in

Characterization of a family of tandemly repeated DNA sequences in Triticeae

  • Published:
Theoretical and Applied Genetics Aims and scope Submit manuscript

Abstract

The recombinant plasmid dpTa1 has an insert of relic wheat DNA that represents a family of tandemly organized DNA sequences with a monomeric length of approximately 340 bp. This insert was used to investigate the structural organization of this element in the genomes of 58 species within the tribe Triticeae and in 7 species representing other tribes of the Poaceae. The main characteristic of the genomic organization of dpTa1 is a classical ladder-type pattern which is typical for tandemly organized sequences. The dpTa1 sequence is present in all of the genomes of the Triticeae species examined and in 1 species from a closely related tribe (Bromus inermis, Bromeae). DNA from Hordelymus europaeus (Triticeae) did not hybridize under the standard conditions used in this study. Prolonged exposure was necessary to obtain a weak signal. Our data suggest that the dpTa1 family is quite old in evolutionary terms, probably more ancient than the tribe Triticeae. The dpTa1 sequence is more abundant in the D-genome of wheat than in other genomes in Triticeae. DNA from several species also have bands in addition to the tandem repeats. The dpTa1 sequence contains short direct and inverted subrepeats and is homologous to a tandemly repeated DNA sequence from Hordeum chilense.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Subscribe and save

Springer+ Basic
EUR 32.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or Ebook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Price includes VAT (Germany)

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Anamthavat-Jónsson K, Heslop-Harrison JS (1993) Isolation and characterization of genome-specific DNA sequences in Triticeae species. Mol Gen Genet 240:151–158

    Google Scholar 

  • Appels R, Dennis ES, Smyth DR, Peacock WJ (1981) Two repeated DNA sequences from the heterochromatic regions of rye (Secale Cereale) chromosomes. Chromosoma 84:265–277

    Google Scholar 

  • Arumuganathan K, Earle ED (1991) Nuclear DNA content of some important plant species. Plant Mol Biol Rep 9:208–218

    Google Scholar 

  • Ausubel ML, Brent R, Kingston RE, Moore DD, Smith JA, Seidman JG, Struhl K (1987) Current protocols in molecular biology 1987–1988. J. Wiley & Sons, New York

    Google Scholar 

  • Bedbrook JR, Jones J, O'Dell M, Thompson RD, Flavell RB (1980) A molecular description of telomeric heterochromatin in Secale species. Cell 19:545–560

    Google Scholar 

  • Belostotsky DA, Ananiev EV (1990) Characterization of relic DNA from barley genome. Theor Appl Genet 80:374–380

    Google Scholar 

  • Bennet MD, Smith JB (1971) The 4C nuclear DNA content of several Hordeum genotypes. Can J Genet Cytol 13:607–611

    Google Scholar 

  • Bothmer R von, Jacobsen N (1989) Intergeneric hybridization between Hordeum and Hordelymus (Poaceae). Nord J Bot 9:113–117

    Google Scholar 

  • Bothmer R von, Jacobsen N, Jørgensen RB, Linde-Laursen I (1991) An ecogeographical study of the genus Hordeum. Systematic and ecogeographical studies of crop genepools, vol 7. IBPGR, Rome

    Google Scholar 

  • Bothmer R von, Lu B, Linde-Laursen I (1994) Intergeneric hybridization and C-banding patterns in Hordelymus (Triticeae, Poaceae). Plant Syst Evol 189:259–266

    Google Scholar 

  • Cauderon Y, Saigne B (1961) New interspecific and intergeneric hybrid involving Agropyron. Wheat Inf Serv 12:13–14

    Google Scholar 

  • Clayton WD, Renvoize SA (1986) Genera Graminum grasses of the world. HMSO, London

    Google Scholar 

  • De Kochko A, Kiefer MC, Cordesse F, Reddy AS, Delseny M (1991) Distribution and organization of a tandemly repeated 352-bp sequence in the Oryzae family. Theor Appl Genet 82:57–64

    Google Scholar 

  • Dennis ES, Peacock WJ (1984) Knob heterochromatin homology in maize and its relatives. J Mol Evol 20:341–350

    Google Scholar 

  • Devereux J, Haeberli P, Smithies O (1984) A comprehensive set of sequence-analysis programmes for the VAX. Nucleic Acids Res 12:387–395

    Google Scholar 

  • Dewey DR (1965) Synthetic hybrids of new world and old world Agropyrons. II. Agropyron riparium x Agropyron repens. Am J Bot 52:1039–1045

    Google Scholar 

  • Dewey DR (1984) The genomic system of classification as a guide to intergeneric hybridization within the perennial Triticeae. Stadler Genet Symp 16:209–280

    Google Scholar 

  • Dianov GL, Kuzminov AV, Mazin AV, Salganik RI (1991) Molecular mechanisms of deletion formation in Escherichia coli plasmids. I. Deletion formation mediated by long direct repeats. Mol Gen Genet 228:153–159

    Google Scholar 

  • Dover G (1982) Molecular drive: a cohesive mode of species evolution. Nature 299:111–117

    Google Scholar 

  • Dvorák J, Zhang HB (1992) Reconstruction of the phylogeny of the genus Triticum from variation in repeated nucleotide sequences. Theor Appl Genet 84:419–429

    Google Scholar 

  • Frederiksen S, Seberg O (1992) Phylogenetic analysis of the Triticeae (Poaceae). Hereditas 116:15–19

    Google Scholar 

  • Gupta PK, Fedak G, Molnar SJ, Wheatcroft R (1989) Distribution of a Seclae cereale DNA repeat sequence among 25 Hordeum species. Genome 32:383–388

    Google Scholar 

  • Hueros G, Loarce Y, Ferrer E (1993) A structural and evolutionary analysis of a dispersed repetitive sequence. Plant Mol Biol 22:635–643

    Google Scholar 

  • Jones JD, Flavell RB (1982) The structure, amount and chromosomal localization of defined repeated DNA sequences in species of the genus Secale. Chromosoma 85:613–639

    Google Scholar 

  • Kellogg EA (1989) Comments on genomic genera in the Triticeae (Poaceae). Am J Bot 76:796–805

    Google Scholar 

  • Kellogg EA (1991) Restriction site variation in the chloroplast genomes of the monogenomic Triticeae. Hereditas 166:43–47

    Google Scholar 

  • Kellogg EA (1992) Tools for studying the chloroplast genomes in the Triticeae (Graminae): an EcoRI map, a diagnostic deletion, and support for Bromus as an outgroup. Am J Bot 79:186–197

    Google Scholar 

  • Löve A (1982) Generic evolution of wheatgrasses. Biol Zbl 101:199–212

    Google Scholar 

  • Löve A (1984) Conspectus of the Triticeae. Feddes Repert Z Bot Taxon Geobot 95:425–521

    Google Scholar 

  • McIntyre CL, Clarke BC, Appels R (1988) Amplification and dispersion of repeated DNA sequences in the Triticeae. Plant Syst Evol 160:39–59

    Google Scholar 

  • Metzlaff M, Troebner W, Baldauf F, Schlegel R, Cullum J (1986) Wheat specific repetitive DNA sequences —construction and characterization of four different genomic clones. Theor Appl Genet 72:207–210

    Google Scholar 

  • Monte JV, McIntyre CL, Gustafson JP (1993) Analysis of phylogenetic relationships in the Triticeae tribe using RFLPs. Theor Appl Genet 86:649–655

    Google Scholar 

  • Rayburn AL, Gill BS (1986) Isolation of a D-genome-specific repeated DNA sequence from Aegilops squarrosa. Plant Mol Biol Rep 4:102–109

    Google Scholar 

  • Rayburn AL, Gill BS (1987) Molecular analysis of the D-genome of the Triticeae. Theor Appl Genet 73:385–388

    Google Scholar 

  • Rivin CJ, Cullis CA, Walbot V (1986) Evaluating quantitative variation in the genome of Zea mays. Genetics 113:1009–1019

    Google Scholar 

  • Salomon B (1993) Interspecific hybridizations in the Elymus semicosTatus group (Poaceae). Genome 36:899–905

    Google Scholar 

  • Sanger F, Nicklen S, Coulson AR (1977) DNA sequencing with chainterminating inhibitors. Proc Natl Acad Sci USA 74:5463–5476

    Google Scholar 

  • Seberg O, Frederiksen S, Baden C, Linde-Laursen I (1991) Peridic Tyon, a new genus from the Balkan peninsula, and its relationship with Festucopsis. Willdenowia 21:87–104

    Google Scholar 

  • Soreng RJ, Davis IJ, Doyle JJ (1990) A phylogenetic analysis of chloroplast DNA restriction site variation in Poaceae subfamily Pooideae. Plant Syst Evol 172:83–97

    Google Scholar 

  • Vogt P (1990) Potential genetic functions of tandem repeated DNA sequence blocks in the human genome are based on a highly conserved “chromatin folding code”. Hum Genet 84:301–336

    Google Scholar 

  • Wang, R-C, Jensen KB (1994) Absence of the J genome in Leymus species (Poaceae: Triticeae): evidence from DNA hybridization and meiotic pairing. Genome 37:231–235

    Google Scholar 

  • Willard HF, Waye JS (1987) Hierarchical order in chromosome specific human alpha satellite DNA. Trends Genet 3:192–198

    Google Scholar 

  • **n ZY, Appels R (1988) Occurrence of rye (Secale cereale) 350-family DNA sequence in Agropyron and other Triticeae. Plant Syst Evol 160:65–76

    Google Scholar 

  • Zhang H-B, Dvorák J (1991) The genome origin of tetraploid species of Leymus (Poaceae: Triticeae) inferred from variation in repeated nucleotide sequences. Am J Bot 78:871–884

    Google Scholar 

  • Zhao X, Wu T, **e Y, Wu R (1989) Genome-specific repetitive sequences in the genus Oryza. Theor Appl Genet 78:201–209

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Additional information

Communicated by P. M. A. Tigerstedt

Rights and permissions

Reprints and permissions

About this article

Cite this article

Vershinin, A., Svitashev, S., Gummesson, P.O. et al. Characterization of a family of tandemly repeated DNA sequences in Triticeae. Theoret. Appl. Genetics 89, 217–225 (1994). https://doi.org/10.1007/BF00225145

Download citation

  • Received:

  • Accepted:

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF00225145

Key words

Navigation