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References
Adams, M.D., Celniker, S.E., Holt, R.A., Evans, C.A., Gocayne, J.D. et al. (2000) The genome sequence of the Drosophila melanogaster. Science 287, 2185–2195.
AGI (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408, 796–815.
Aragão, F., Ribeiro, S., Barros, L., Brasileiro, A., Maxwell, D., Rech, E. and Faria, J. (1998) Transgenic beans (Phaseolus vulgaris L.) engineered to express viral antisense RNAs show delayed and attenuated symptoms to bean golden mosaic geminivirus. Mol. Breed. 4, 491–499.
Aragão, F.J.L., Barros, L.M.G., de Sousa, M.V., Grossi de Sa, M.F., Almeida, E.R.P., Gander, E.S. and Rech, E.L. (1999) Expression of a methionine-rich storage albumin from the Brazil nut (Bertholletia excelsa H.B.K., Lecythidaceae) in transgenic bean plants (Phaseolus vulgaris L., Fabaceae). Genetics & Mol. Biol. 22, 445–449.
Aragão, F.J.L., Vianna, G.R., Albino, M.M.C. and Rech, E.L. (2002) Transgenic dry bean tolerant to the herbicide glufosinate ammonium. Crop Sci. 42, 1298–1302.
Aroca, R., Ferrante, A., Vernieri, P. and Chrispeels, M.J. (2006) Drought, abscisic acid and transpiration rate effects on the regulation of PIP aquaporin gene expression and abundance in Phaseolus vulgaris plants. Ann. Bot. 98, 1301–1310.
Arumuganathan, K. and Earle, D.E. (1991) Nuclear DNA content of some important plant species. Plant Mol. Biol. Report. 9, 208–218.
Becerra Velásquez, V.L., and Gepts, P.(1994) RFLP diversity in common bean (Phaseolus vulgaris L.). Genome 37, 256–263.
Beebe, S.E., Rojas-Pierce, M., Yan, X., Blair, M.W., Pedraza, F., Muñoz, F., Tohme, J. and Lynch, J.P. (2006) Quantitative trait loci for root architecture traits correlated with phosphorus acquisition in common bean, Crop Sci. 46, 413–423.
Beebe, S.E., Skroch, P.W., Thome, J., Duque, M.C., Pedraza, F., Nienhuis, J. (2000) Structure of genetic diversity among common bean landraces of middle American origin based on correspondance analysis of RAPD. Crop Sci. 40, 264–273.
Bennett, M. and Leitch, I. (1995) Nuclear DNA amounts in angiosperms. Ann. Bot. 76, 113–176.
Bennett, M. and Leitch, I. (2005) Plant DNA C-Values database. Release 4.0 http://www. rbgkew.org.uk/cval/database1.html.
Blanc, G., and Wolfe, K.H. (2004) Widespread paeleopolyploidy in model plant species inferred from age distributions of duplicate genes. Plant Cell 17, 1667–1678.
Blair, M.W., Giraldo, M.C., Buendia, H.F., Tovar, E., Duque, M.C., and Beebe, S.E. (2006) Microsatellite marker diversity in common bean (Phaseolus vulgaris L.) Theor. Appl. Genet. 113, 100–109.
Blair, M.W., Pedraza, F., Buendia, H.F., Gaitán-Solís, E., Beebe, S.E., Gepts, P., and Tohme, J. (2003) Development of a genome-wide anchored microsatellite map for common bean (Phaseolus vulgaris L.) Theor. Appl. Genet. 107, 1362–1374.
Blyden, E.R., Doerner, P.W., Lamb, C.J. and Dixon, R.A. (1991) Sequence analysis of a chalcone isomerase cDNA of Phaseolus vulgaris L. Plant Mol. Biol. 16, 167–169.
Broughton, W.J., Hernandez, G., Blair, M., Beebe, S., Gepts, P. and Vanderleyden, J. (2003) Beans (Phaseolus spp.) - model food legumes. Plant and Soil 252, 55–128.
Cadle-Davidson, M. and Jahn, M. (2006) Differential gene expression in Phaseolus vulgaris I locus NILs challenged with bean common mosaic virus. Theor. Appl. Genet. 112, 1452–1457.
CESC (1998) Genome sequence of the nematode C. elegans: a platform for investigating biology. Science 282, 2012–2018.
Choi, S.S., and Lahn, B.T. (2003) Adaptive evolution of MRG, a neuron-specific gene family implicated in nociception. Genome Res. 13, 2252–2259.
Choi, H.K., Mun, J.H., Kin, D.J., Zhu, H., Baek, J.M., Mudge, J., Roe, B., Ellis, N., Doyle, J., Kiss, G.B., Young, N.D., and Cook, D.R. (2004) Estimating genome conservation between crop and model legume species. Proc. Natl. Acad. Sci., USA 101, 15289–15294.
Crepet, W.L., Nixon, K.C., and Gandolfo, M.A. (2004) Fossil evidence and phylogeny: the age of major angiosperm clades based on mesofossil and macrofossil evidence from Cretaceous deposits. Amer. J. Bot. 91, 1666–1682.
CSAC (2005) Initial sequence of the chimpanzee genome and comparison with the human genome. Nature 437, 69–87.
Debouck, D.G., Toro, O., Paredes, O.M., Johnson, W.C., and Gepts, P. (1993) Genetic diversity and ecological distribution of Phaseolus vulgaris in northwestern South America. Econ. Bot. 47, 408–423.
DeClercq, J., Zambre, M., Van Montagu, M., Dillen, W. and Angenon, G. (2002) An optimized Agrobacterium-mediated transformation procedure for Phaseolus acutifolius A. Gray. Pl. Cell Reports 21, 333–340.
Delgado-Salinas, A.., Bibler, R. and Lavin, M. (2006) Phylogeny of the genus Phaseolus (Leguminosae): a recent diversification in an ancient landscape. Syst. Bot. 56, in press.
Doyle, J.J., and Luckow, M.A. (2003) The rest of the iceberg. Legume diversity and evolution in a phylogenetic context. Plant Phys. 131, 900–910.
Estrada-Navarrete, G., Alvarado-Affantranger, X., Olivares, J.-E., Díaz-Camino, C., Santana, O., Murillo, E., Guillén, G., Sánchez-Guevara, N., Acosta, J., Quinto, C., Li, D., Gresshoff, P.M,. and Sánchez, F. (2006) Agrobacterium rhizogenes-transformation of the Phaseolus spp.: A tool for functional genomics. Mol. Plant Microbe Interact. 19, 1385–1393.
Flicek, P., Keibler, E. Hu, P. Korf, I., and Brent, M.R. (2003) Leveraging the mouse genome for gene prediction in human: from whole-genome shotgun reads to a global synteny map. Genome Res. 13, 46–54.
Flint, J., Tufarelli, C., Peden, J., Clark, K., Daniels, R.J., Hardison, R., Miller, W., Philipsen, S., Tan-Un, K.C., McMorrow, T., Frampton, J., Alter, B.P., Frischauf, A.M., and Higgs, D.R. (2001) Comparative genome analysis delimits a chromosomal domain and identifies key regulatory elements in the alpha globin cluster. Hum. Mol. Genet. 10, 371–382.
Freyre, R., Skroch, P.W., Geffroy, V., Adam-Blondon, A.F., Shirmohamadali, A.., Johnson, W.C., Llaca, V., Nodari, R.O., Pereira, P.A.., Tsai, S.M., Tohme, J., Dron, M., Nienhuis, J., Vallejos, C.E., and Gepts.,P. (1998) Towards an integrated linkage map of common bean. 4. Development of a core linkage map and alignment of RFLP maps. Theor. Appl. Genet. 97:847–856.
Gepts, P. (1990) Biochemical evidence bearing on the domestication of Phaseolus (Fabaceae) beans. Econ. Bot. 44, 22–38.
Gepts, P. (1998) Origin and evolution of common bean: past events and recent trends. HortSci. 33, 1124–1130.
Gepts, P., Aragão, F., de Barros, E., Blair, M.W., Brondani, R., Broughton, W.J., Galasso, I., Hernández, G., Kami, J., Lariguet, P., McClean, P., Melotto, M., Miklas, P., Pauls, P., Pedrosa-Harand, A., Porch, T., Sánchez, F., Sparvoli, F. and Yu, K. (2007) Genomics of Phaseolus beans, a major source of dietary protein and micronutrients in the Tropics. In: P.H. Moore and R. Ming (Eds), Genomics of Tropical Crop Plants. Springer, Berlin, in press.
Gepts, P., and Bliss, F.A. (1986) Phaseolin variability among wild and cultivated common beans (Phaseolus vulgaris) from Colombia. Econ. Bot. 40, 469–478.
Gepts, P, and Debouck, D. 1991. Origin, domestication, and evolution of common bean (Phaseolus vulgaris L.). In: A. van Schoonhoven and O. Voyest (Eds.) Common Beans: Research for Crop Improvement. C.A.B. Intl., Wallingford, UK and CIAT, Cali, Colombia, pp. 7–53.
González, A., Wong, A., Delgado-Salinas, A., Papa, R., and Gepts, P. (2005) Assessment of inter simple sequence repeat markers to differentiate sympatric wild and domesticated populations of common bean (Phaseolus vulgaris L.). Crop Sci. 35, 606–615.
Guo, H., and Moose, S.P. (2003). Conserved noncoding sequences among cultivated cereal genomes identify candidate regulatory sequence elements and patterns of promoter evolution. Plant Cell 15, 1143–1158.
Hoffman, L.M., and Donaldson, D.D. (1985) Characterization of two Phaseolus vulgaris phytohemagglutinin genes closely linked on the chromosome. EMBO J. 4, 883–889.
Inada, D.C., Bashir, A., Lee, C., Thomas, B.C., Ko, C., Goff, S.A., and Freeling, M. (2003). Conserved noncoding sequences in the grasses. Genome Res. 13, 2030–2041.
Inoue, S., Konoshita, T., and Simazaki, K. (2005) Possible involvement of phototropins in leaf movement of kidney bean in response to blue light. Plant Physiol. 138, 1994–2004.
IRGSP (2005) The map-based sequence of the rice genome. Nature 436, 793–800.
Islam, F.M.A., Basford, K.E., Jara, C., Redden, R.L., and Beebe, S. (2002) Seed compositional and disease resistance differences among gene pools in cultivated common bean. Genet. Resour. Crop. Evol. 49, 285–293.
Jackson, S.A., Rokshar, D., Stacey, G., Shoemaker, R.C., Schmutz, J., and Grimwood, J. (2006) Toward a reference sequence of the soybean genome: a multiagency effort. Crop Sci. 46,S-55–61.
Kami, J., Becerra Velásquez, B., Debouck, D.G., and Gepts, P. (1995) Identification of presumed ancestral DNA sequences of phaseolin in Phaseolus vulgaris. Proc. Natl. Acad. Sci. U.S.A. 92, 1101–1104.
Kami, J., Poncet, V., Geffroy, V. and Gepts, P. (2006) Development of four phylogenetically-arrayed BAC libraries and sequence of the APA locus in Phaseolus vulgaris. Theor. Appl. Genet. 112, 987–998.
Kaplan, L., and Lynch, T.F. (1999) Phaseolus (Fabaceae) in archaeology: AMS radiocarbon dates and their significance for pre-Columbian agriculture. Econ. Bot. 53, 261–272.
Kellis, M., Patterson, N., Endrizzi, M., Birren, B., and Lander, E.S. (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423, 242–254.
Kelly, J.D., Gepts, P., Miklas, P.N. and Coyne, D.P. (2003) Tagging and map** of genes and QTL and molecular marker-assisted selection for traits of economic importance in bean and cowpea. Field Crops Res. 82, 135–154.
Koenig, R., and Gepts, P. (1989) Allozyme diversity in wild Phaseolus vulgaris: further evidence for two major centers of diversity. Theor. Appl. Genet. 78, 809–817.
Kumar, S., Filipski, A., Swarna, V., Walker A., and Hedges, B.S. (2005) Placing confidence limits on the molecular age of the human–chimpanzee divergence. Proc. Natl, Acad. Sci., U.S.A 102, 18842–18847.
Lai, J., Ma, J., Swigonova, Z., Ramakrishna, W., Linton, E., Llaca, V., Tanyolac, B., Park, Y.J., Jenong, O.Y., Bennetzen, J.L., and Messing, J. (2004) Gene loss and movement in the maize genome. Genome Res. 14, 1924–1931.
Lavin, M., Herendeen, P.S., and Wojciechowski, M.F. (2005) Evolutionary rates analysis of Leguminosae implicates a rapid diversification of lineages during the Tertiary. System. Biol. 54, 530–549.
Lewis, G., Schrire, B., Mackinder, B., and Lock, M. (2005) Legumes of the World. Royal Botanic Gardens, Kew Publishing; London.
Lioi, L., Sparvoli, F., Galasso, I., Lanave, C., and Bollini, R. (2003) Lectin-related resistance factors against bruchids evolved through a number of duplication events. Theor. Appl. Genet. 107, 814–822.
Liu, Z.C., Park, B.J., Kanno, A., and Kameya, T. (2005) The novel use of a combination of sonication and vacuum infiltration in Agrobacterium-mediated transformation of kidney bean (Phaseolus vulgaris L.) with lea gene. Mol. Breed. 16, 189–197.
López, C.E., Acosta, I.F., Jara, C., Pedraza, F., Gaitán-Solís, E., Gallego, G., Beebe, S. and Tohme, J. (2003) Identifying resistance gene analogs associated with resistances to different pathogens in common bean. Phytopathology 93, 88–95.
Ma, J. SanMiguel, P., Lai, J., Messing, J., and Bennetzen, J.L. (2005) DNA rearrangement in orthologous orp regions of the maize, rice, and sorghum genomes. Genetics 170, 1209–1220.
Magallón, S., Crane, P.R., and Herendeen, P.S. (1999) Phylogenetic pattern, diversity, and diversification of eudicots. Ann. Mo. Bot. Gard. 86, 297–372.
Magallón, S., and Sanderson, M.J. (2001) Absolute diversification rates in angiosperms. Evolution 55, 1762–1780.
Maréchal, R. (1971) Observations sur quelques hybrides dans le genre Phaseolus. II. Les phénomènes méiotiques. Bull. Rech. Agron. Gembloux 6, 461–489.
Margis-Pinheiro, M., Martivet, J. and Burkard, G. (1994) Bean class IV chitinase gene: structure, developmental expression and induction by heat stress Plant Sci. 98, 163–173.
Margulies, E.H., and Green, E.D. (2003) Detecting highly conserved regions of the human genome by multispecies sequence comparison. Cold Spring Harb. Symp. Quant. Biol. 68,255–263.
Margulies, E.H., Blanchette, M., Haussler, D., and Green, E.D. (2003) Identification and characterization of multi-species conserved sequences. Genome Res. 13, 2507–2518.
Margulies, E.H., Vinson, J.P., Miller, W., Jaffe, D.B., Lindblad-Toh, K., Chang, J.L., Green, E.D., Lander, E.S., Mullikin, J.C., and Clamp, M. (2005) An initial strategy for the systematic identification of functional elements in the human genome by low-redundancy comparative sequencing. Proc. Natl. Acad. Sci., USA. 102, 4795–4800.
Matsuoka, Y., Vigouroux, Y., Goodman, M.M., Sanchez, G.J., Buckler IV, E., and Doebley, J. (2002) A single domestication for maize shown by multilocus microsatellite genoty**. Proc. Natl. Acad. Sci., USA. 99, 6080–6084.
McCallum, C.M., Comai, L., Greene, E.A. and Henikoff, S. (2000) Targeting induced local lesions in genomes (TILLING) for plant functional genomics. Pl. Physiol. 123, 439–442.
McClean, P.E., Kami, J., and Gepts, P. (2004a) Genomics and genetic diversity in common bean. In: R.F. Wilson, H.T. Stalker, and E.C. Brummer (Eds.) Legume Crop Genomics. AOCS Press, Champaign, Illinois, USA, pp. 60–82.
McClean, P.E., Lee, R.K. and Miklas, P.N. (2004b) Sequence diversity analysis of dihydroflavanol reductase intron 1 in common bean. Genome 47, 266–280.
Melotto, M., Coelho, M.F., Pedrosa-Harand, A., Kelly, J.D. and Camargo, L.E.A. (2004) The anthracnose resistance locus Co-4 of common bean is located on chromosome 3 and contains putative disease resistance-related genes. Theor. Appl. Genet. 109, 690–699.
Melotto, M., Monteiro-Vitorello, C.B., Bruschi, A.G., and Camargo, L.E. (2005) Comparative bioinformatic analysis of genes expressed in common bean (Phaseolus vulgaris L.) seedlings. Genome, 48, 562–570.
Miklas, P.N., Kelly, J.D., Beebe, S.E. and Blair, M.W. (2006) Common bean breeding for resistance against biotic and abiotic stresses: from classical to MAS breeding. Euphytica 147,106–131.
Moscone, E.A., Klein, F., Lambrou, M., Fuchs, J. and Schweizer, D. (1999) Quantitative karyoty** and dual-color FISH map** of 5S and 18S–25S rDNA probes in the cultivated Phaseolus species (Leguminosae). Genome 42, 1224–1233.
Mutlu, N., Miklas, P.N. and Coyne, D.P. (2005) Resistance gene analog polymorphism (RGAP) markers co-localize with disease resistance genes and QTL in common bean. Mol. Breed. 17, 127–135.
Myers, E.W., Sutton, G.G., Delcher, A.L., Dew, I.M., Fasulo, D.P., et al. (2000) A whole-genome assembly of Drosophila. Science 287, 2196–2204.
Nagl, W. (1974) The Phaseolus suspensor and its polytene chromosomes. Z. Pflanzenphysiol. 73, 1–44.
Nanni, L., Losa, A., Bellucci, E., Kater, M., Gepts, P. and Papa, R. (2005) Identification and molecular diversity of a genomic sequence similar to SHATTERPROOF (SHP1) in Phaseolus vulgaris L. Abstract, Plant and Animal Genome XIII, Jan. 15–19, 2005: http://www.intl-pag.org/pag/13/abstracts/PAG13_P470.html
Nenno, M., Schumann, K. and Nagl, W. (1994) Detection of rRNA and phaseolin genes on polytene chromosomes of Phaseolus coccineus by fluorescence in situ hybridization after pepsin treatment. Genome 37, 1018–1021.
Nodari, R.O., Koinange, E.M.K., Kelly, J.D., and Gepts, P. (1992) Towards an integrated linkage map of common bean. I. Development of genomic DNA probes and levels of restriction fragment length polymorphism. Theor. Appl. Genet. 84, 186–192.
Ochoa, I.E., Blair, M.W., and Lynch, J.P. (2006) QTL analysis of adventitious root formation in common bean under contrasting phosphorus availability. Crop Sci. 46, 1609–1621.
Pagel, J., Walling, J.G., Young, N.D., Shoemaker, R.C., and Jackson, S.A. (2004) Segmental duplications within the Glycine max genome revealed by fluorescence in situ hybrization of bacterial artificial chromosomes. Genome 47, 764–768.
Papa, R., and Gepts, P. (2003) Asymmetry of gene flow and differential geographical structure of molecular diversity in wild and domesticated common bean (Phaseolus vulgaris L.) from Mesoamerica. Theor. Appl. Genet. 106, 239–250.
Pedrosa, A., Vallejos, C.E., Bachmair, A., and Schweizer, D. (2003) Integration of common bean (Phaseolus vulgaris L.) linkage and chromosomal maps. Theor. Appl. Genet. 106,205–212.
Pedrosa-Harand, A., Almeida, C.C.S., Mosiolek, M., Blair, M.W., Schweizer, D. and Guerra, M. (2006) Extensive ribosomal DNA amplification during Andean common bean (Phaseolus vulgaris L.) evolution. Theor. Appl. Genet. 112, 924–933.
Powell, W., Morgante, M., Doyle, J.J., McNicol, J.W., Tingey, S.V., and Rafalski, A.J. 1996. Genepool variation in genus Glycine subgenus soja revealed by polymorphic nucler and chloroplast microsatellites. Genetics 144, 793–803.
Ramirez, M., Graham, M.A., Blanco-Lopez, L., Silvente, S., Medrano-Soto, A., Blair, M.W., Hernandez, G., Vance, C.P. and Lara, M. (2005) Sequencing and analysis of common bean ESTs. Building a foundation for functional genomics. Pl. Physiol. 137, 1211–1227.
Rivkin, M.I., Vallejos, C.E., and McClean, P.E. 1999. Disease-resistance related sequences in common bean. Genome 42, 41–47.
Rodriguez-Uribe, L. and O’Connell, M.A. (2006) A root-specific bZIP transcription factor is responsive to water deficit stress in tepary bean (Phaseolus acutifolius) and common bean (P. vulgaris). Plant Sci. 171, 300–307.
Ryder, T.B., Hedrick, S.A., Bell, J.N., Liang, X.W., Clouse, S.D. and Lamb, C.J. (1987) Organization and differential activation of a gene family encoding the plant defense enzyme chalcone synthase in Phaseolus vulgaris. Mol. Gen. Genet. 210, 219–233.
Salamov, A.A., and Solovyev, V.V. (2000) Ab initio gene finding in Drosophila genomic DNA. Genome Res. 10, 516–522.
Schlueter, J.A., Dixon, P., Granger, C., Grant, D., Clark, L., Doyle, J.J., and Shoemaker, R.C. (2004) Mining EST databases to resolve evolutionary events in major crop species. Genome 47, 868–876.
Shoemaker, R.C., Polzin, K., Labate, J., Specht, J., Brummer, E.C., Olson, T.K., Young, N., Concibido, V., Wilcox, J., Tamulonis, J.P., Kochert, G., and Boerma, H.R. (1996) Genome duplications in soybean (Glycine subgenus soja). Genetics 144, 329–338.
Shultz, J.L., Kurunam, D., Shopinski, K., Iqbal, M.J., Kazi, S., Zobrist, K., Bashir, R., Yaegashi, S., Lavu, N., Afzal, A.J., Yesudas, C.R., Kassem, M.A., Wu, C.C., Zhang, H.B., Town, C.D., Meksem, K. and Lightfoot, D.A. (2006) The Soybean Genome Database (SoyGD): a browser for display of duplicated, polyploid, regions and sequence tagged sites on the integrated physical and genetic maps of Glycine max. Nucl. Acids Res. 34, D758–D765.
Singh, S.P., Gepts, P., and DeBouck, D.G. (1991). Races of common bean (Phaseolus vulgaris, Fabaceae). Econ.Bot. 45, 379–386.
Stevens, P.F. (2001) Angiosperm Phylogeny Website. Version 7, December 2006 and continuously updated (http://www.mobot.org/MOBOT/research/APweb/).
Sun, S.M., Slightom, J.L., and Hall, T.C. (1981) Intervening sequences in a plant gene – comparison of the partial sequence of the cDNA and genomic DNA of French bean phaseolin. Nature 289, 37–41.
Thomas, J.W., Touchman, J.W., Blakesley, R.W., Bouffard, G.G., Beckstrom-Sternberg, S.M., et al. (2003) Comparative analyses of multi-species sequences from targeted genomic regions. Nature 424, 788–793.
Tohme, J., González, D.O., Beebe, S., and Duque, M.C. (1996) AFLP analysis of gene pools of a wild bean core collection. Crop Sci. 36, 1375–1384.
Tuskan, G.A., Difazio, S., Jansson, S., Bohlmann, J., Grigoriev, I., et al. (2006) The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science 313, 1596–1604.
Vallejos, C.E., Astua-Monge, G., Jones, V., Plyler, T.R., Sakiyama, N.S., and Mackenzie, S.A. (2006) Genetic and molecular characterization of the I locus of Phaseolus vulgaris. Genetics 172, 1229–1242.
Vallejos, C.E., Sakiyama, N.S., and Chase, C.D. (1992) A molecular marker-based linkage map of Phaseolus vulgaris L. Genetics 131, 733–740.
Veltcheva, M., Svetleva, D., Petkova, S. and Perl, A. (2005) In vitro regeneration and genetic transformation of common bean (Phaseolus vulgaris L.) - problems and progress. Scientia Horticulturae 107, 2–10.
Venter, J.C., Adams, M.D., Myers, E.W., Li, P.W., Mural, R.J. et al. (2001) The sequence of the human genome. Science 291, 1304–1351.
Walling, J.G., Pires, J.C., and Jackson, S.A. (2005) Preparation of samples for comparative studies of plant chromosomes using in situ hybridization methods. Methods in Enzymology 395,442–459.
Walter, M.H., Liu, J.W., Grand, C., Lamb, C.J. and Hess, D. (1990) Bean pathogenesis-related (PR) proteins deduced from elicitor-induced transcripts are members of a ubiquitous new class of conserved PR proteins including pollen allergens. Mol. Gen. Genet. 222, 353–360.
Wei, C., and Brent, M.R. (2006) Using ESTs to improve the accuracy of de novo gene prediction. BMC Bioinformatics 7, 327.
Wikström, N., Savlainen, V., and Chase, M.W. (2001) Evolution of the angiosperms: calibrating the family tree. Proc. Royal Soc. London, B, Biol. Sci. 268, 2211–2220.
Wing, R.A., Ammiraju, J.S., Luo, M., Kim, H. Yu, Y. Kudrna, D., Goicoechea, J.L., Wang, W., Nelson, W., Rao, K., Brar, D., Mackill, D.J., Han, B., Soderlund, C., Stein, L., SanMiguel, P., and Jackson, S. (2005) The Oryza map alignment project: the golden path to unlocking the genetic potential of wild rice species. Plant Mol. Biol. 59, 53–62.
Woolfe, A., Goodson, M., Goode, D.K., Snell, P., McEwen, G.K., Vavouri, T., Smith, S.f., North, P., Callaway, H., Kelly, K, Walter, K., Abnizova, I., Gilks, W., Edwards, Y.J., Cooke, J.E., and Elgar, G. (2005) Highly expressed non-coding sequences are associated with vertebrate development. PLoS Biol. 3, e7.
Wright, S.I., Bi, I.V., Schroeder, S.G., Yamasaki, M., Doebley, J.F., McMullen, M.D., Gaut, B.S. (2005). The effects of artificial selection on the maize genome. Science 308, 1310–1314.
Xu, D.H. and Gai, Y. (2003) Genetic diversity of wild and cultivated soybeans growing in China revealed by RAPD analysis. Plant Breeding 122, 503–506.
Yamasaki, M., Tenaillon, M.I., Bi, I.V., Schroeder, S.G,, Sanchez-Villeda, H., Doebley, J.F., Gaut, B.S., McMullen, M.D. (2005) A large-scale screen for artificial selection in maize identifies candidate agronomic loci for domestication and crop improvement. Plant Cell 17,2859–2872.
Yang, S.H., and Zeevaart, J.A. (2006) Expression of ABA 8′-hydroxylases in relation to leaf water relations and seed development in bean. Plant J. 47, 675–686.
Zambre, M., Goossens, A., Cardona, C., Van Montagu, M., Terryn, N. and Angenon, G. (2005) A reproducible genetic transformation system for cultivated Phaseolus acutifolius (tepary bean) and its use to assess the role of arcelins in resistance to the Mexican bean weevil. Theor. Appl, Genet. 110, 914–924.
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McClean, P.E., Lavin, M., Gepts, P., Jackson, S.A. (2008). Phaseolus vulgaris: A Diploid Model for Soybean. In: Stacey, G. (eds) Genetics and Genomics of Soybean. Plant Genetics and Genomics: Crops and Models, vol 2. Springer, New York, NY. https://doi.org/10.1007/978-0-387-72299-3_4
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