Abstract
In this paper we showed a method on how to find a SNP using the BLAST algorithm. Which is more efficiency and reliable.
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Šerý, O.: Enhanced Property Specification and Verification in BLAST. In: Chechik, M., Wirsing, M. (eds.) FASE 2009. LNCS, vol. 5503, pp. 456–469. Springer, Heidelberg (2009)
Zhang, K., Calabrese, P., Nordborg, M., Sun, F.: Haplotype block structure and its applications in association studies. The American Journal of Human Genetics
Huang, Y.T., Zhang, K., Chen, T., Chao, K.M.: Selecting additional tag SNPs for tolerating missing data in genoty**. BMC Bioinformatics 6, 263 (2005)
Crawfod, D.C., Nickerson, D.A.: Definition and clinical importance of haplotypes. Annu. Rev. Med. 56, 303–320 (2005)
Bafna, V., et al.: Haplotypes and informative SNP selection algorithms:don’t block out information. In: Proceedings of 8th Pacific Symposium on Biocomputing (PSB 2003), pp. 466–477 (2003)
Zhang, K., Qin, Z., Liu, J., Chen, T., Waterman, M., Sun, F.: Haplotype block partitioning and tag SNP selection using genotype data and their applications to association studies. Genome Res. 14, 908–916 (2004)
Hinds, D.A., et al.: Whole-genome patterns of common DNA variation in three human populations. Science 307, 1072–1079 (2005)
International Human Genome Sequencing Consortium. Initial sequencing and analysis of the human genome. Nature 409(6822), 860–921 (2001)
Yang, Y., Zhang, J., Hoh, J., et al.: Efficiency of single nucleotide polymorphism haplotype estimation from pooled DNA. Proc. Nat. Acad. Set. 100(12), 7225–7230 (2003)
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© 2012 Springer-Verlag Berlin Heidelberg
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Kang, X., He, L., Dong, L. (2012). Research on TAGSNPS Selection Based on BLAST Algorithm. In: Zeng, D. (eds) Advances in Control and Communication. Lecture Notes in Electrical Engineering, vol 137. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-26007-0_12
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DOI: https://doi.org/10.1007/978-3-642-26007-0_12
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