Diversity Oriented Synthesis: A Challenge for Synthetic Chemists

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Chemical Genomics

Abstract

This article covers the diversity-oriented synthesis (DOS) of small molecules in order to generate a collection of pure compounds that are attractive for lead generation in a phenotypic, high-throughput screening approach useful for chemical genetics and drug discovery programmes. Nature synthesizes a rich structural diversity of small molecules, however, unfortunately, there are some disadvantages with using natural product sources for diverse small-molecule discovery. Nevertheless we have a lot to learn from nature. The efficient chemical synthesis of structural diversity (and complexity) is the aim of DOS. Highlights of this article include a discussion of nature’s and synthetic chemists’ strategies to obtain structural diversity and an analysis of molecular descriptors used to classify compounds. The assessment of how successful one diversity-oriented synthesis is vs another is subjective; therefore we use freely available software (www.cheminformatics.org/diversity) to assess structural diversity in any combinatorial synthesis.

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References

  • Bender A, Mussa HY, Glen RC (2004) Similarity searching of chemical databases using atom environment descriptors (MOLPRINT 2D): evaluation of performance. J Chem Inf Comput Sci 44:1708–1718

    Article  PubMed  CAS  Google Scholar 

  • Bender A, Glen RC (2004) Molecular similarity: a key technique in molecular informatics. Org Biomol Chem 2:3204–3218

    Article  PubMed  CAS  Google Scholar 

  • Bohacek RS, McMartin C, Guida WC (1996) The art and practice of structure-based drug design: a molecular modelling perspective. Med Res Rev 16:3–50

    Article  PubMed  CAS  Google Scholar 

  • Brown RD, Martin YC (1996) Use of structure-activity data to compare structure-based clustering methods and descriptors for use in compound selection. J Chem Inform Comput Sci 36:572–584

    Article  CAS  Google Scholar 

  • Burke MD, Schreiber SL (2004) A planning strategy for diversity-oriented synthesis. Angew Chem Int Ed 43:46–58

    Article  CAS  Google Scholar 

  • Clardy J, Walsh C (2004) Lessons from natural molecules. Nature 432:829–837

    Article  PubMed  ADS  CAS  Google Scholar 

  • Downs GM, Willett P, Fisanick W (1994) Similarity searching and clustering of chemical-structure databases using molecular property data. J Chem Inf Comput Sci 34:1094–1102

    Article  CAS  Google Scholar 

  • Estrada E, Uriarte E (2001) Recent advances on the role of topological indices in drug discovery research. Curr Med Chem 8:1573–1588

    PubMed  CAS  Google Scholar 

  • Lipinski CA, Lombardo F, Dominy BW, Feeney PJ (1997) Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings. Adv Drug Deliv Rev 23:3–25

    Article  CAS  Google Scholar 

  • Newman DJ (2003) Natural products as sources of new drugs over the period 1981–2002. J Nat Prod 66:1022–1037

    Article  PubMed  CAS  Google Scholar 

  • O’Donovan C, Apweiler R, Bairoch A (2001) The human proteomics initiative (HPI). Trends Biotechnol 19:178–181

    Article  PubMed  CAS  Google Scholar 

  • Oguri H, Schreiber SL (2005) Skeletal diversity via a folding pathway: synthesis of indole alkaloid-like skeletons. Org Lett 7:47–50

    Article  PubMed  CAS  Google Scholar 

  • Schreiber SL (1998) Chemical genetics resulting from a passion for synthetic organic chemistry. Bioorg Med Chem 6:1127–1152

    Article  PubMed  CAS  MathSciNet  Google Scholar 

  • Schreiber SL (2000) Target-oriented and diversity-oriented organic synthesis in drug discovery. Science 287:1964–1969

    Article  PubMed  ADS  CAS  Google Scholar 

  • Schreiber SL (2003) The small molecule approach to biology. Chem Eng News 81:51–61

    Google Scholar 

  • Spring DR (2003) Diversity-oriented synthesis; a challenge for synthetic chemists. Org Biomol Chem 1:3867–3870

    Article  PubMed  CAS  Google Scholar 

  • Willett P, Bernard JM, Downs GM(1998) Chemical similarity searching. JChem Inf Comput Sci 38:983–996

    Article  CAS  Google Scholar 

  • Xue L, Bajorath J (2000) Molecular descriptors in chemoinformatics, computational combinatorial chemistry and virtual screening. Comb Chem High Throughput Screen 3:363–372

    PubMed  CAS  Google Scholar 

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Bender, A. et al. (2006). Diversity Oriented Synthesis: A Challenge for Synthetic Chemists. In: Jaroch, S., Weinmann, H. (eds) Chemical Genomics. Ernst Schering Research Foundation Workshop, vol 58. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-540-37635-4_4

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