Abstract
Hepatocellular carcinoma (HCC) is one of the most common types of primary liver cancer and a leading cause of cancer-related deaths worldwide. Diagnosis of the HCC using H&E stained liver histopathology images is a challenging task mainly because of the time-consuming and error-prone manual examination even when performed by skilled pathologists. Deep learning has revolutionized medical diagnosis by providing accurate and economical computer-aided diagnosis solutions. The classification of histopathology images with algorithms such as convolutional neural networks has shown promising results in recent studies. To overcome the limitations of previous studies and provide a more efficient solution, this study proposes a novel deep learning-based ensemble model. The publicly available TCGA-LIHC dataset, consisting of three cancer types based on severity level, is pre-processed and then further used for model development and evaluation. Four pre-trained CNN models AlexNet, VGG16, Inception-v3, and ResNet50 that follow transfer learning approaches are used to build the ensemble model. The proposed ensemble model outperforms the state-of-the-art CNN architectures in terms of sensitivity, specificity, F1-score, accuracy, and area under the curve (AUC). The proposed model when compared with previously published models for the same TCGA-LIHC dataset, shows a better HCC prediction accuracy than most. In conclusion, we affirm that the proposed ensemble deep learning model is able to classify H&E stained histopathology images better than the state-of-the-art CNN architectures, ultimately providing a time-saving and precise solution to the HCC classification task.
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References
A.C. Society, Key statistics about liver cancer (2023), https://www.cancer.org/cancer/liver-cancer/about/what-is-key-statistics.html [Accessed: (April 03, 2023)]
J.M. Llovet, R.K. Kelley, A. Villanueva, A.G. Singal, E. Pikarsky, S. Roayaie, R. Lencioni, K. Koike, J. Zucman-Rossi, R.S. Finn, Hepatocellular carcinoma. Nat. Rev. Disease Primers 7(1), 1–28 (2021)
J. Ferlay, I. Soerjomataram, R. Dikshit, S. Eser, C. Mathers, M. Rebelo, D.M. Parkin, D. Forman, F. Bray, Cancer incidence and mortality worldwide: sources, methods and major patterns in globocan 2012. Int. J. Cancer 136(5), E359–E386 (2015)
A.B. Chowdhury, K.J. Mehta, Liver biopsy for assessment of chronic liver diseases: a synopsis, in Clinical and Experimental Medicine (2022), pp. 1–13
J.P. Hinton, K. Dvorak, E. Roberts, W.J. French, J.C. Grubbs, A.E. Cress, H.A. Tiwari, R.B. Nagle, A method to reuse archived h&e stained histology slides for a multiplex protein biomarker analysis. Methods and Protocols 2(4), 86 (2019)
A.A. Aatresh, K. Alabhya, S. Lal, J. Kini, P.P. Saxena, Livernet: efficient and robust deep learning model for automatic diagnosis of sub-types of liver hepatocellular carcinoma cancer from h & e stained liver histopathology images. Int. J. Comput. Assist. Radiol. Surg. 16, 1549–1563 (2021)
M. Pazgan-Simon, S. Serafinska, J. Janocha-Litwin, K. Simon, J. Zuwala-Jagiello, Diagnostic challenges in primary hepatocellular carcinoma: case reports and review of the literature, in Case Reports in Oncological Medicine, vol. 2015 (2015)
Q. Li, X. Wang, Image classification based on sift and svm, in 2018 IEEE/ACIS 17th International Conference on Computer and Information Science (ICIS) (IEEE, 2018), pp. 762–765
L. Deng, H. Li, H. Liu, H. Zhang, Y. Zhao, Research on multi-feature fusion for support vector machine image classification algorithm, in 2021 IEEE International Conference on Electronic Technology, Communication and Information (ICETCI) (IEEE, 2021), pp. 516–519
Z. Shi, L. He, K. Suzuki, T. Nakamura, H. Itoh, Survey on neural networks used for medical image processing. Int. J. Comput. Sci. 3(1), 86 (2009)
R. Yamashita, M. Nishio, R.K.G. Do, K. Togashi, Convolutional neural networks: an overview and application in radiology. Insights into Imaging 9, 611–629 (2018)
A. Krizhevsky, I. Sutskever, G.E. Hinton, Imagenet classification with deep convolutional neural networks, in Advances in Neural Information Processing Systems, ed. by F. Pereira, C. Burges, L. Bottou, K. Weinberger, vol. 25 (Curran Associates, Inc., 2012)
K. Simonyan, A. Zisserman, Very deep convolutional networks for large-sale image rcognition, in 3rd International Conference on Learning Representations, ICLR 2015, San Diego, CA, USA, May 7–9, 2015, Conference Track Proceedings, ed. by Y. Bengio, Y. LeCun (2015)
K. He, X. Zhang, S. Ren, J. Sun, Deep residual learning for image recognition, in IEEE Conference on Computer Vision and Pattern Recognition (CVPR) (2016), pp. 770–778
C. Szegedy, W. Liu, Y. Jia, P. Sermanet, S. Reed, D. Anguelov, D. Erhan, V. Vanhoucke, A. Rabinovich, Going deeper with convolutions, in Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition (2015), pp. 1–9
S. Ioffe, C. Szegedy, Batch normalization: accelerating deep network training by reducing internal covariate shift, in International Conference on Machine Learning (2015), pp. 448–456
C. Szegedy, V. Vanhoucke, S. Ioffe, J. Shlens, Z. Wojna, Rethinking the inception architecture for computer vision, in Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition (2016), pp. 2818–2826
A. Titoriya, S. Sachdeva, Breast cancer histopathology image classification using alexnet, in 4th IEEE International Conference on Information Systems and Computer Networks (ISCON) (2019), pp. 708–712
M. Šarić, M. Russo, M. Stella, M. Sikora, Cnn-based method for lung cancer detection in whole slide histopathology images, in 4th IEEE International Conference on Smart and Sustainable Technologies (SpliTech) (2019), pp. 1–4
M. Halicek, M. Shahedi, J.V. Little, A.Y. Chen, L.L. Myers, B.D. Sumer, B. Fei, Head and neck cancer detection in digitized whole-slide histology using convolutional neural networks. Sci. Rep. 9(1), 14043 (2019)
F.A. Spanhol, L.S. Oliveira, C. Petitjean, L. Heutte, Breast cancer histopathological image classification using convolutional neural networks, in International Joint Conference on Neural Networks (IJCNN) (2016), pp. 2560–2567
J. Zhang, X. Wei, C. Che, Q. Zhang, X. Wei, Breast cancer histopathological image classification based on convolutional neural networks. J. Med. Imaging Health Inf. 9(4), 735–743 (2019)
M. Toğaçar, K.B. Özkurt, B. Ergen, Z. Cömert, Breastnet: a novel convolutional neural network model through histopathological images for the diagnosis of breast cancer. Phys. A: Stat. Mech. Its Appl. 545, 123592 (2020)
C. Sun, A. Xu, D. Liu, Z. **ong, F. Zhao, W. Ding, Deep learning-based classification of liver cancer histopathology images using only global labels. IEEE J. Biomed. Health Inf. 24(6), 1643–1651 (2019)
R. Yan, F. Ren, Z. Wang, L. Wang, T. Zhang, Y. Liu, X. Rao, C. Zheng, F. Zhang, Breast cancer histopathological image classification using a hybrid deep neural network. Methods 173, 52–60 (2020)
H. Abdeltawab, F. Khalifa, M. Ghazal, L. Cheng, D. Gondim, A. El-Baz, A pyramidal deep learning pipeline for kidney whole-slide histology images classification. Sci. Rep. 11(1), 20189 (2021)
S. Mangal, A. Chaurasia, A. Khajanchi, Convolution neural networks for diagnosing colon and lung cancer histopathological images (2020), ar**v preprint ar**v:2009.03878
D. Müller, I. Soto-Rey, F. Kramer, An analysis on ensemble learning optimized medical image classification with deep convolutional neural networks. IEEE Access 10, 66 467–66 480 (2022)
A.H. Shahin, A. Kamal, M.A. Elattar, Deep ensemble learning for skin lesion classification from dermoscopic images, in 9th Cairo International Biomedical Engineering Conference (CIBEC) (2018), pp. 150–153
W.K. Moon, Y.-W. Lee, H.-H. Ke, S.H. Lee, C.-S. Huang, R.-F. Chang, Computer-aided diagnosis of breast ultrasound images using ensemble learning from convolutional neural networks. Comput. Methods Programs Biomed. 190, 105361 (2020)
Y. Zheng, C. Li, X. Zhou, H. Chen, H. Xu, Y. Li, H. Zhang, X. Li, H. Sun, X. Huang et al., Application of transfer learning and ensemble learning in image-level classification for breast histopathology (Intell, Med, 2022)
S.H. Kassani, P.H. Kassani, M.J. Wesolowski, K.A. Schneider, R. Deters, Classification of histopathological biopsy images using ensemble of deep learning networks (2019), ar**v preprint ar**v:1909.11870
Z. Hameed, S. Zahia, B. Garcia-Zapirain, J. Javier Aguirre, A. Maria Vanegas, Breast cancer histopathology image classification using an ensemble of deep learning models. Sensors 20(16), 4373 (2020)
B. Erickson, S. Kirk, Y. Lee, O. Bathe, M. Kearns, C. Gerdes, K. Rieger-Christ, J. Lemmerman, Tcga-lihc dataset, in Radiology data from the cancergenome atlas liver hepatocellular Carcinoma [TCGA-LIHC] collection. Cancer Imag Arch
Y. Li, N. Li, X. Yu, K. Huang, T. Zheng, X. Cheng, S. Zeng, X. Liu, Hematoxylin and eosin staining of intact tissues via delipidation and ultrasound. Sci. Rep. 8(1), 12259 (2018)
M. Macenko, M. Niethammer, J.S. Marron, D. Borland, J.T. Woosley, X. Guan, C. Schmitt, N.E. Thomas, A method for normalizing histology slides for quantitative analysis, in IEEE International Symposium on Biomedical Imaging: From Nano to Macro (2009), pp. 1107–1110
P. Wang, E. Fan, P. Wang, Comparative analysis of image classification algorithms based on traditional machine learning and deep learning. Pattern Recognit. Lett. 141, 61–67 (2021)
C. Özdemir, Avg-topk: a new pooling method for convolutional neural networks. Expert Syst. Appl. 223, 119892 (2023)
R. Hecht-Nielsen, Theory of the backpropagation neural network, in Neural Networks for Perception (Elsevier, 1992), pp. 65–93
S. Ruder, An overview of gradient descent optimization algorithms (2016), ar**v preprint ar**v:1609.04747
M.A. Ganaie, M. Hu, A. Malik, M. Tanveer, P. Suganthan, Ensemble deep learning: a review. Engin. Appl. Artif. Intell. 115, 105151 (2022)
S.J. Pan, Q. Yang, A survey on transfer learning. IEEE Trans. Knowledge Data Engin. 22(10), 1345–1359 (2010)
K. Wang, X. Gao, Y. Zhao, X. Li, D. Dou, C.-Z. Xu, Pay attention to features, transfer learn faster cnns, in International Conference on Learning Representations (2020)
A. Paszke, S. Gross, F. Massa, A. Lerer, J. Bradbury, G. Chanan, T. Killeen, Z. Lin, N. Gimelshein, L. Antiga et al., Pytorch: an imperative style, high-performance deep learning library, in Advances in Neural Information Processing Systems, vol. 32 (2019)
Acknowledgements
This work was supported by the Science and Engineering Research Board, India under Grant SERB- CRG/2021/005752.
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Rukmangad, A., Deshpande, A., Jamthikar, A., Gupta, D., Bhurane, A., Meshram, N.B. (2024). Classification of H&E Stained Liver Histopathology Images Using Ensemble Learning Techniques for Detection of the Level of Malignancy of Hepatocellular Carcinoma (HCC). In: Tsihrintzis, G.A., Virvou, M., Doukas, H., Jain, L.C. (eds) Advances in Artificial Intelligence-Empowered Decision Support Systems. Learning and Analytics in Intelligent Systems, vol 39. Springer, Cham. https://doi.org/10.1007/978-3-031-62316-5_3
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