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Aasen, H., Van Wittenberghe, S., Medina, N., Damm, A., Goulas, Y., Wieneke, S., Hueni, A., Malenovský, Z., Alonso, L., Pacheco-Labrador, J., Cendrero-Mateo, M.P., Tomelleri, E., Burkart, A., Cogliati, S., Rascher, U., Arthur, A.: Sun-induced chlorophyll fluorescence II: review of passive measurement setups, protocols, and their application at the leaf to canopy level. Remote Sens. 11(8), 927 (2019). https://doi.org/10.3390/rs11080927
Alonso, L., Gómez-Chova, L., Vila-Francés, J., Amorós-López, J., Guanter, L., Calpe, J.: Improved fraunhofer line discrimination method for vegetation fluorescence quantification. IEEE Geosci. Remote Sens. Lett. 5, 620–624 (2008). https://doi.org/10.1109/LGRS.2008.2001180
Atherton, J., MacArthur, A., Hakala, T., Maseyk, K., Robinson, I., Weiwei, L., Honkavaara, E., Porcar-Castell, A.: Drone measurements of solar-induced chlorophyll fluorescence acquired with a low-weight DFOV spectrometer system. In: IGARSS 2018: 2018 IEEE International Geoscience and Remote Sensing Symposium. IEEE International Symposium on Geoscience and Remote Sensing IGARSS, IEEE, pp. 8834-8836, 38th IEEE International Geoscience and Remote Sensing Symposium (IGARSS), Valencia, Spain, 22/07/2018 (2018). https://doi.org/10.1109/IGARSS.2018.8517474
Baker, N.R.: Chlorophyll fluorescence: a probe of photosynthesis in vivo. Ann. Rev. Plant Biol. 59(1), 89–113 (2008). https://doi.org/10.1146/annurev.arplant.59.032607.092759
Bandopadhyay, S., Rastogi, A., Juszczak, R.: Review of top-of-canopy sun-induced fluorescence (SIF) studies from ground, UAV, airborne to spaceborne observations. Sensors 20(4), 1144 (2020). https://doi.org/10.3390/s20041144
Bendig, J., Malenovsky, Z., Gautam, D., Lucieer, A.: Solar-induced chlorophyll fluorescence measured from an unmanned aircraft system: sensor etaloning and platform motion correction. IEEE Trans. Geosci. Remote Sens. 58(5), 3437–3444 (2020). https://doi.org/10.1109/TGRS.2019.2956194
Calderón, R., Navas-Cortés, J., Lucena, C., Zarco-Tejada, P.: High-resolution airborne hyperspectral and thermal imagery for early detection of verticillium wilt of olive using fluorescence, temperature and narrow-band spectral indices. Remote Sens. Environ. 139, 231–245 (2013). https://doi.org/10.1016/j.rse.2013.07.031
Cendrero-Mateo, M.P., Wieneke, S., Damm, A., Alonso, L., Pinto, F., Moreno, J., Guanter, L., Celesti, M., Rossini, M., Sabater, N., Cogliati, S., Julitta, T., Rascher, U., Goulas, Y., Aasen, H., Pacheco-Labrador, J., Mac Arthur, A.: Sun-induced chlorophyll fluorescence III: benchmarking retrieval methods and sensor characteristics for proximal sensing. Remote Sens. 11(8), 962 (2019). https://doi.org/10.3390/rs11080962
Chang, C., Zhou, R., Kira, O., Marri, S., Skovira, J., Gu, L., Sun, Y.: An unmanned aerial system (UAS) for concurrent measurements of solar-induced chlorophyll fluorescence and hyperspectral reflectance toward improving crop monitoring. Agricult. Forest Meteorol. 294, 108145 (2020). https://doi.org/10.1016/j.agrformet.2020.108145
Damm, A., Erler, A., Hillen, W., Meroni, M., Schaepman, M.E., Verhoef, W., Rascher, U.: Modeling the impact of spectral sensor configurations on the FLD retrieval accuracy of sun-induced chlorophyll fluorescence. Remote Sens. Environ. 115, 1882–1892 (2011). https://doi.org/10.1016/j.rse.2011.03.011
Drusch, M., Moreno, J., Bello, U.D., Franco, R., Goulas, Y., Hut, A., Kraft, S., Middleton, E.M., Miglietta, F., Mohammed, G., Nedbal, L., Rascher, U., Schüttemeyer, D., Verhoef, W.: The fluorescence explorer mission concept—ESA’s earth explorer 8. IEEE Trans. Geosci. Remote Sens. 55(3), 1273–1284 (2017)
Frankenberg, C., Berry, J.: Solar induced chlorophyll fluorescence: origins, relation to photosynthesis and retrieval. In: Liang, S. (ed.) Comprehensive Remote Sensing, chap. 3.1, pp. 143–162. Elsevier, Amsterdam (2018)
Frankenberg, C., Fisher, J.B., Worden, J., Badgley, G., Saatchi, S.S., Lee, J.E., Toon, G.C., Butz, A., Jung, M., Kuze, A., Yokota, T.: New global observations of the terrestrial carbon cycle from GOSAT: patterns of plant fluorescence with gross primary productivity. Geophys. Res. Lett. 38(17), L17706 (2011). https://doi.org/10.1029/2011GL048738
Frankenberg, C., O’Dell, C., Berry, J., Guanter, L., Joiner, J., Köhler, P., Pollock, R., Taylor, T.E.: Prospects for chlorophyll fluorescence remote sensing from the orbiting carbon observatory-2. Remote Sens. Environ. 147, 1–12 (2014). https://doi.org/10.1016/j.rse.2014.02.007
Garzonio, R., Di Mauro, B., Colombo, R., Cogliati, S.: Surface reflectance and sun-induced fluorescence spectroscopy measurements using a small hyperspectral UAS. Remote Sens. 9(5) (2017). https://doi.org/10.3390/rs9050472
Guanter, L., Frankenberg, C., Dudhia, A., Lewis, P.E., Gómez-Dans, J., Kuze, A., Suto, H., Grainger, R.G.: Retrieval and global assessment of terrestrial chlorophyll fluorescence from GOSAT space measurements. Remote Sens. Environ. 121, 236–251 (2012). https://doi.org/10.1016/j.rse.2012.02.006
Guanter, L., Bacour, C., Schneider, A., Aben, I., van Kempen, T.A., Maignan, F., Retscher, C., Köhler, P., Frankenberg, C., Joiner, J., Zhang, Y.: The TROPOSIF global sun-induced fluorescence dataset from the Sentinel-5P TROPOMI mission. Earth Syst. Sci. Data 13(11), 5423–5440 (2021). https://doi.org/10.5194/essd-13-5423-2021
IPCC: Climate Change 2021: The Physical Science Basis. Contribution of Working Group I to the Sixth Assessment Report of the Intergovernmental Panel on Climate Change, vol. In Press. Cambridge University Press, Cambridge, United Kingdom and New York, (2021). https://doi.org/10.1017/9781009157896
Joiner, J., Yoshida, Y., Vasilkov, A., Yoshida, Y., Corp, L., Middleton, E.: First observations of global and seasonal terrestrial chlorophyll fluorescence from space. Biogeosciences 8(3), 637–651 (2011). https://doi.org/10.5194/bg-8-637-2011
Joiner, J., Guanter, L., Lindstrot, R., Voigt, M., Vasilkov, A.P., Middleton, E.M., Huemmrich, K.F., Yoshida, Y., Frankenberg, C.: Global monitoring of terrestrial chlorophyll fluorescence from moderate-spectral-resolution near-infrared satellite measurements: methodology, simulations, and application to GOME-2. Atmospher. Measure. Techn. 6(10), 2803–2823 (2013). https://doi.org/10.5194/amt-6-2803-2013
Joiner, J., Yoshida, Y., Zhang, Y., Duveiller, G., Jung, M., Lyapustin, A., Wang, Y., Tucker, C.J.: Estimation of terrestrial global gross primary production (GPP) with satellite data-driven models and eddy covariance flux data. Remote Sens. 10(9) (2018). https://doi.org/10.3390/rs10091346
Kivi, R., Heikkinen, P.: Fourier transform spectrometer measurements of column CO\({ }_{2}\) at Sodankylä, Finland. Geosci. Instrument. Methods Data Syst. 5(2), 271–279 (2016). https://doi.org/10.5194/gi-5-271-2016
Köhler, P., Guanter, L., Joiner, J.: A linear method for the retrieval of sun-induced chlorophyll fluorescence from GOME-2 and SCIAMACHY data. Atmosph. Measur. Techn. 8(6), 2589–2608 (2015). https://doi.org/10.5194/amt-8-2589-2015
Köhler, P., Frankenberg, C., Magney, T.S., Guanter, L., Joiner, J., Landgraf, J.: Global retrievals of solar-induced chlorophyll fluorescence with TROPOMI: first results and intersensor comparison to OCO-2. Geophys. Res. Lette. 45(19), 10456–10463 (2018). https://doi.org/10.1029/2018GL079031
MacArthur, A., Robinson, I., Rossini, M., Davis, N., MacDonald, K.: A dual-field-of-view spectrometer system for reflectance and fluorescence measurements (Piccolo Doppio) and correction of etaloning. In: Proceedings of the Fifth International Workshop on Remote Sensing of Vegetation Fluorescence, Fifth International Workshop on Remote Sensing of Vegetation Fluorescence, Paris, United Kingdom, 22/04/14 (2014)
Magney, T.S., Barnes, M.L., Yang, X.: On the covariation of chlorophyll fluorescence and photosynthesis across scales. Geophys. Res. Lett. 47(23), e2020GL091098 (2020). https://doi.org/10.1029/2020GL091098
Maseyk, K., Atherton, J., Thomas, R., Wood, K., Tausz-Posch, S., Arthur, A., Porcar-Castell, A., Tausz, M.: Investigating forest photosynthetic response to elevated CO 2 using UAV-based measurements of solar induced fluorescence. In: GARSS 2018-2018 IEEE International Geoscience and Remote Sensing Symposium, vol. 2018–July, pp. 8830–8833 (2018). https://doi.org/10.1109/IGARSS.2018.8517348
Maxwell, K., Johnson, G.N.: Chlorophyll fluorescence - a practical guide. J. Experim. Botany 51, 659–668 (2000)
Meroni, M., Rossini, M., Guanter, L., Alonso, L., Rascher, U., Colombo, R., Moreno, J.: Remote sensing of solar-induced chlorophyll fluorescence: review of methods and applications. Remote Sens. Environ. 113(10), 2037–2051 (2009). https://doi.org/10.1016/j.rse.2009.05.003
Migliavacca, M., Perez-Priego, O., Rossini, M., El-Madany, T.S., Moreno, G., van der Tol, C., Rascher, U., Berninger, A., Bessenbacher, V., Burkart, A., Carrara, A., Fava, F., Guan, J.H., Hammer, T.W., Henkel, K., Juarez-Alcalde, E., Julitta, T., Kolle, O., Martín, M.P., Musavi, T., Pacheco-Labrador, J., Pérez-Burgueño, A., Wutzler, T., Zaehle, S., Reichstein, M.: Plant functional traits and canopy structure control the relationship between photosynthetic CO2 uptake and far-red sun-induced fluorescence in a Mediterranean grassland under different nutrient availability. New Phytol. 214(3), 1078–1091 (2017). https://doi.org/10.1111/nph.14437
Mihai, L., Mac Arthur, A., Hueni, A., Robinson, I., Sporea, D.: Optimized spectrometers characterization procedure for near ground support of ESA FLEX observations: part 1 spectral calibration and characterisation. Remote Sens. 10(2), 289 (2018). https://doi.org/10.3390/rs10020289
Mohammed, G.H., Colombo, R., Middleton, E.M., Rascher, U., van der Tol, C., Nedbal, L., Goulas, Y., Pérez-Priego, O., Damm, A., Meroni, M., Joiner, J., Cogliati, S., Verhoef, W., Malenovský, Z., Gastellu-Etchegorry, J.P., Miller, J.R., Guanter, L., Moreno, J., Moya, I., Berry, J.A., Frankenberg, C., Zarco-Tejada, P.J.: Remote sensing of solar-induced chlorophyll fluorescence (SIF) in vegetation: 50years of progress. Remote Sens. Environ. 231, 111177 (2019). https://doi.org/10.1016/j.rse.2019.04.030
Pacheco-Labrador, J., Hueni, A., Mihai, L., Sakowska, K., Julitta, T., Kuusk, J., Sporea, D., Alonso, L., Burkart, A., Cendrero-Mateo, M.P., Aasen, H., Goulas, Y., Mac Arthur, A.: Sun-induced chlorophyll fluorescence I: instrumental considerations for proximal spectroradiometers. Remote Sens. 11(8), 960 (2019). https://doi.org/10.3390/rs11080960
Porcar-Castell, A., Tyystjärvi, E., Atherton, J., Van Der Tol, C., Flexas, J., Pfündel, E., Moreno, J., Frankenberg, C., Berry, J.: Linking chlorophyll a fluorescence to photosynthesis for remote sensing applications: mechanisms and challenges. J. Experim. Botany 65(15), 4065–4095 (2014). https://doi.org/10.1093/jxb/eru191
Porcar-Castell, A., Malenovský, Z., Magney, T., Van Wittenberghe, S., Fernandez-Marin, B., Maignan, F., Zhang, Y., Maseyk, K., Atherton, J., Albert, L., Robson, T., Zhao, F., Garcia Plazaola, J.I., Ensminger, I., Rajewicz, P., Grebe, S., Tikkanen, M., Kellner, J., Ihalainen, J., Logan, B.: Chlorophyll a fluorescence illuminates a path connecting plant molecular biology to Earth-system science. Nat. Plants 7, 998–1009 (2021). https://doi.org/10.1038/s41477-021-00980-4
Sabater, N., Vicent, J., Alonso, L., Verrelst, J., Middleton, E., Porcar-Castell, A., Moreno, J.: Compensation of oxygen transmittance effects for proximal sensing retrieval of canopy-leaving sun-induced chlorophyll Fluorescence. Remote Sens. 10(10), 1551 (2018). https://doi.org/10.3390/rs10101551
Sabater, N., Kolmonen, P., Van Wittenberghe, S., Arola, A., Moreno, J.: Challenges in the atmospheric characterization for the retrieval of spectrally resolved fluorescence and PRI region dynamics from space. Remote Sens. Environ. 254, 112226 (2021). https://doi.org/10.1016/j.rse.2020.112226
Sun, Y., Frankenberg, C., Jung, M., Joiner, J., Guanter, L., Köhler, P., Magney, T.: Overview of solar-induced chlorophyll fluorescence (SIF) from the orbiting Carbon observatory-2: retrieval, cross-mission comparison, and global monitoring for GPP. Remote Sens. Environ. 209, 808–823 (2018). https://doi.org/10.1016/j.rse.2018.02.016
Thum, T., Zaehle, S., Köhler, P., Aalto, T., Aurela, M., Guanter, L., Kolari, P., Laurila, T., Lohila, A., Magnani, F., Van Der Tol, C., Markkanen, T.: Modelling sun-induced fluorescence and photosynthesis with a land surface model at local and regional scales in northern Europe. Biogeosciences 14(7), 1969–1984 (2017). https://doi.org/10.5194/bg-14-1969-2017
Walther, S., Voigt, M., Thum, T., Gonsamo, A., Zhang, Y., Köhler, P., Jung, M., Varlagin, A., Guanter, L.: Satellite chlorophyll fluorescence measurements reveal large-scale decoupling of photosynthesis and greenness dynamics in boreal evergreen forests. Global Change Biol. 22(9), 2979–2996 (2016). https://doi.org/10.1111/gcb.13200
Xu, S., Atherton, J., Riikonen, A., Zhang, C., Oivukkamäki, J., MacArthur, A., Honkavaara, E., Hakala, T., Koivumäki, N., Liu, Z., Porcar-Castell, A.: Structural and photosynthetic dynamics mediate the response of SIF to water stress in a potato crop. Remote Sens. Environ. 263, 112555 (2021). https://doi.org/10.1016/j.rse.2021.112555
Zarco-Tejada, P., Berni, J., Suárez, L., Sepulcre-Cantó, G., Morales, F., Miller, J.: Imaging chlorophyll fluorescence with an airborne narrow-band multispectral camera for vegetation stress detection. Remote Sens. Environ. 113(6), 1262–1275 (2009). https://doi.org/10.1016/j.rse.2009.02.016
Zarco-Tejada, P., González-Dugo, V., Berni, J.: Fluorescence, temperature and narrow-band indices acquired from a UAV platform for water stress detection using a micro-hyperspectral imager and a thermal camera. Remote Sens. Environ. 117, 322–337 (2012). https://doi.org/10.1016/j.rse.2011.10.007
Zarco-Tejada, P., Catalina, A., González, M., Martín, P.: Relationships between net photosynthesis and steady-state chlorophyll fluorescence retrieved from airborne hyperspectral imagery. Remote Sens. Environ. 136, 247–258 (2013). https://doi.org/10.1016/j.rse.2013.05.011
Zarco-Tejada, P., Suarez, L., Gonzalez-Dugo, V.: Spatial resolution effects on chlorophyll fluorescence retrieval in a heterogeneous canopy using hyperspectral imagery and radiative transfer simulation. IEEE Geosci. Remote Sens. Lett. 10(4), 937–941 (2013). https://doi.org/10.1109/LGRS.2013.2252877
Zhang, Z., Zhang, Y., Zhang, Q., Chen, J.M., Porcar-Castell, A., Guanter, L., Wu, Y., Zhang, X., Wang, H., Ding, D., Li, Z.: Assessing bi-directional effects on the diurnal cycle of measured solar-induced chlorophyll fluorescence in crop canopies. Agricult. Forest Meteorol. 295, 108147 (2020). https://doi.org/10.1016/j.agrformet.2020.108147
Acknowledgements
Research has been partially funded by the Academy of Finland (grant agreements 337552, 331829, and 330165). The instrument was purchased with FMI investment funding for innovative measurements. The technical staff at the FMI Arctic Space Centre are gratefully acknowledged.
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Honkanen, M., Heikkinen, P., MacArthur, A., Thum, T., Kivi, R., Lindqvist, H. (2024). UAV-Borne Measurements of Solar-Induced Chlorophyll Fluorescence (SIF) at a Boreal Site. In: Westerlund, T., Peña Queralta, J. (eds) New Developments and Environmental Applications of Drones. FinDrones 2023. Springer, Cham. https://doi.org/10.1007/978-3-031-44607-8_8
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