Abstract
With the advancement of sequencing technologies, the identification of molecular approaches has been used for the preservation of gene pool sources and for improving breeding programs in recent years. At the molecular level, diversity within and between genotypes or accessions is commonly assessed using various laboratory-based techniques, such as allozyme or DNA analysis, which directly determine diversity levels. Population size, heterozygosity, and quantification of genetic diversity are employed as fitness indicators and positively correlated with population fitness. The current study provides an overview and application of the molecular marker techniques used for the analysis of genetic diversity in faba beans (Vicia faba L.). Different markers were used to identify specific genes, gene actions and construct gene maps that helped in the development of gene transfer. Furthermore, these markers have also played a significant role to determine the species evolution and phylogeny analysis and help to a better understanding of the distribution and breadth of the genetic diversity within and among the species. The current chapter discussed the application of different molecular markers, i.e., non-PCR-based markers (RFLP), PCR-based markers (RAPD, ISSR, SSR, SSAP, AFLP, SRAP), and sequence-based markers (SNP) that were used for the improvement of faba bean. The advanced marker technique has an advantage over the basic technique and enhanced resolution and sensitivity to detect the genetic gap and differences among the genotypes.
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Akash, M., & Myers, G. (2012). The development of faba bean expressed sequence tag-simple sequence repeats (EST-SSRs) and their validity in diversity analysis. Plant Breeding, 131, 522–530. https://doi.org/10.1111/j.1439-0523.2012.01969.x
Alghamdi, S. S. (2009). Varietal identification and genetic purity assessment of F1 hybrid seeds using RAPD markers in faba bean (Vicia faba L.). Acta Horticulturae, 829, 269–274. https://doi.org/10.17660/ActaHortic.2009.829.39
Alghamdi, S. S., Al-Faifi, S. A., Migdadi, H. M., Ammar, M. H., & Siddique, K. M. (2011). Inter-simple sequence repeat (ISSR)-based diversity assessment among faba bean genotypes. Crop & Pasture Science, 62(9), 755–760. https://doi.org/10.1071/CP11045
Alghamdi, S. S., Migdadi, H. M., Ammar, M. H., Paull, J. G., & Siddique, K. H. M. (2012a). Faba bean genomics, current status and future prospects. Euphytica, 186(3), 609–624. https://doi.org/10.1007/s10681-012-0658-4
Alghamdi, S. S., Al-Faifi, S. A., Migdadi, H. M., Khan, M. A., El-Harty, E. H., & Ammar, M. H. (2012b). Molecular diversity assessment using Sequence Related Amplified Polymorphism (SRAP) markers in Vicia faba L. International Journal of Molecular Sciences, 1(12)3, 16457–16471. https://doi.org/10.3390/ijms131216457
Ammar, M. H., Alghamdi, S. S., Migdadi, H. M., Khan, M. A., El-Harty, E. H., & Al-Faifi, S. A. (2015). Assessment of genetic diversity among faba bean genotypes using agro-morphological and molecular markers. Saudi Journal of Biological Sciences, 22(3), 340–350. https://doi.org/10.1016/j.sjbs.2015.02.005
Basheer-Salimia, R., Shtaya, M., Awad, M., Abdallah, J., & Hamdan, Y. (2013). Genetic diversity of Palestine landraces of faba bean (Vicia faba) based on RAPD markers. Genetics and Molecular Research, 12(3), 3314–3323.
El-Esawi, M. A. (2017). SSR analysis of genetic diversity and structure of the germplasm of faba bean (Vicia faba L.). Comptes Rendus Biologies, 340, 474–480. https://doi.org/10.1016/j.crvi.2017.09.008
Ellis, T. H. N., Poyser, S. J., Knox, M. R., Vershinin, A. V., & Ambrose, M. J. (1998). Polymorphism of the insertion site of Ty1-copia class retrotransposon and its use for linkage and diversity analysis in pea. Molecular and General Genetics, 260, 9–19. https://doi.org/10.1007/PL00008630
El-Rodeny, W., Kimura, M., Hirakawa, H., Sabah, A., Shirasawa, K., Sato, S., Tabata, S., Sasamoto, S., Watanabe, A., Kawashima, K., Kato, M., Wada, T., Tsuruoka, H., Takahashi, C., Minami, C., Nanri, K., Nakayama, S., Kohara, M., Yamada, M., & Isobe, S. (2014). Development of EST-SSR markers and construction of a linkage map in faba bean (Vicia faba). Breeding Science, 64, 252–263.
Gӧl, S., Doganlar, S., & Frary, A. (2017). Relationship between geographical origin, seed size and genetic diversity in faba bean (Vicia faba L.) as revealed by SSR markers. Molecular Genetics and Genomics, 292(5), 991–999. https://doi.org/10.1007/s00438-017-1326-0
Gong, Y. M., Xu, S. C., Mao, W. H., Hu, Q. Z., Zhang, G. W., Ding, J., & Li, Z. Y. (2010). Generation and characterization of 11 novel EST derived microsatellites from Vicia faba (Fabaceae). American Journal of Botany, 97, 69–71. https://doi.org/10.3732/ajb.1000166
Gong, Y. M., Xu, S. C., Mao, W. H., Li, Z. Y., Hu, Q. Z., Zhang, G. W., & Ju, D. (2011). Genetic diversity analysis of faba bean (Vicia faba L.) based on EST-SSR markers. Agricultural Sciences in China, 10(6), 838–844.
Kaur, S., Cogan, N. O. I., Forster, J. W., & Paull, J. G. (2014). Assessment of genetic diversity in faba bean based on single nucleotide polymorphism. Diversity, 6(1), 88–101. https://doi.org/10.3390/d6010088
Kwon, S. J., Hu, J., & Coyne, C. J. (2010). Genetic diversity and relationship among faba bean (Vicia faba L.) germplasm entries as revealed by TRAP markers. Plant Genetic Resources: Characterization and Utilization, 8(3), 204–213. https://doi.org/10.1017/S1479262110000201
Laskar, R. A., Laskar, A. A., Raina, A., & Amin, R. (2018). Induced mutation analysis with biochemical and molecular characterization of high yielding lentil mutant lines. International Journal of Biological Macromolecules, 109, 167–179.
Link, W., Dixkens, C., Singh, M., Schwall, M., & Melchinger, A. E. (1995). Genetic diversity in European and Mediterranean faba bean germplasm revealed by RAPD markers. Theoretical and Applied Genetics, 90(1), 27–32. https://doi.org/10.1007/BF00220992
Ma, Y., Yang, T., Guan, J., Wang, S., Wang, H., Sun, X., & Zong, X. (2011). Development and characterization of 21 EST-derived microsatellite markers in Vicia faba (faba bean). American Journal of Botany, 98, 22–24. https://doi.org/10.3732/ajb.1000407
Mulugeta, B., Tesfaye, K., Keneni, G., & Ahmed, S. (2021). Genetic diversity in spring faba bean (Vicia faba L.) genotypes as revealed by high-throughput KASP SNP markers. Genetic Resources and Crop Evolution, 68(5), 1971–1986.
Nurmansyah, Alghamdi, S. S., Migdadi, H. M., Khan, M. A., & Afzal, M. (2020). AFLP-based analysis of variation and population structure in mutagenesis induced faba bean. Diversity, 12(8), 1–14.
Ouji, A., El Bok, S., Syed, N. H., Abdellaoui, R., Rouaissi, M., Flavell, A. J., & El Gazzah, M. (2012). Genetic diversity of faba bean (Vicia faba L.) populations revealed by sequence specific amplified polymorphism (SSAP) markers. African Journal of Biotechnology, 11(9), 2162–2168. https://doi.org/10.5897/AJB11.2991
Pozarkova, D., Koblizkova, A., Roman, B., Torres, A. M., Lucretti, S., Lysak, M., Dolezel, J., & Macas, J. (2002). Development and characterization of microsatellite markers from chromosome 1-specifi cDNA libraries of Vicia faba. Biologia Plantarum, 45, 337–345. https://doi.org/10.1023/A:1016253214182
Raina, A., Laskar, R. A., Tantray, Y. R., Khursheed, S., Wani, M. R., & Khan, S. (2020). Characterization of induced high yielding cowpea mutant lines using physiological, biochemical and molecular markers. Scientific Reports, 10(1), 1–22.
Rebaa, F., Abid, G., Aouida, M., Abdelkarim, S., Aroua, I., Muhovski, Y., Baudoin, J., M’hamdi, M., Sassi, K., & Jebara, M. (2017). Genetic variability in Tunisian populations of faba bean (Vicia faba L. var. major) assessed by morphological and SSR markers. Physiology and Molecular Biology of Plants, 23(2), 397–409. https://doi.org/10.1007/s12298-017-0419-x
Salazar-Laureles, M. E., Pérez-López, D. J., González-Huerta, A., Vázquez-García, L. M., & Valadez-Moctezuma, E. (2015). Genetic variability analysis of faba bean accessions using inter-simple sequence repeat (ISSR) markers. Chilean Journal of Agricultural Research, 75(1), 122–130. https://doi.org/10.4067/S0718-58392015000100017
Sanz, A. M., Gonzalez, S. G., Syed, N. H., Suso, M. J., Saldaña, C. C., & Flavell, A. J. (2007). Genetic diversity analysis in Vicia species using retrotransposon-based SSAP markers. Molecular Genetics and Genomics, 278(4), 433–441. https://doi.org/10.1007/s00438-007-0261-x
Sorkheh, K., Shiran, B., Aranzana, M. J., Mohammadi, S. A., & Martinez-Gomez, P. (2007). Application of amplified fragment length polymorphism (AFLPs) analysis to plant breeding and genetics, procedures, applications and prospects. Journal of Food, Agriculture and Environment, 5(1), 197–204.
Suprasanna, P., Mirajkar, S. J., & Bhagwat, S. G. (2015). Induced mutations and crop improvement. In B. Bahadur, R. M. Venkat, L. Sahijram, & K. Krishnamurthy (Eds.), Plant biology and biotechnology (pp. 593–617). Springer. https://doi.org/10.1007/978-81-322-2286-6_23
Suresh, S., Park, J. H., Cho, G. T., Lee, H. S., Baek, H. J., Lee, S. Y., & Chung, J. W. (2013). Development and molecular characterization of 55 novel polymorphic cDNA-SSR markers in faba bean (Vicia faba L.) using 454 pyrosequencing. Molecules, 18(2), 1844–1856. https://doi.org/10.3390/molecules18021844
Tam, S. M., Mhiri, C., Vogelaar, A., Kerkveld, M., Pearce, S. R., & Grandbastien, M. A. (2005). Comparative analyses of genetic diversities within tomato and pepper collections detected by retrotransposon-based SSAP, AFLP and SSR. Theoretical and Applied Genetics, 110, 819–831. https://doi.org/10.1007/s00122-004-1837-z
Van de Ven, M., Powell, W., Ramsay, G., & Waugh, R. (1990). Restriction fragment length polymorphisms as genetic markers in Vicia. Heredity, 65, 329–342. https://doi.org/10.1038/hdy.1990.102
Wang, H., Zong, X., Guan, J., Yang, T., Sun, X., Ma, Y., & Redden, R. (2012). Genetic diversity and relationship of global faba bean (Vicia faba L.) germplasm revealed by ISSR markers. Theoretical and Applied Genetics, 124(5), 789–797. https://doi.org/10.1007/s00122-011-1750-1
Waugh, R., McLean, K., Flavell, A. J., Pearce, S. R., Kumar, A., Thomas, B. B., & Powell, W. (1997). Genetic distribution of Bare-1-like retrotransposable elements in the barley genome revealed by sequence-specific amplification polymorphisms (S-SAP). Molecular and General Genetics, 253, 687–694. https://doi.org/10.1007/s004380050372
Zeid, M., Schon, C. C., & Link, W. (2003). Genetic diversity in recent elite faba bean lines using AFLP markers. Theoretical and Applied Genetics, 107(7), 1304–1314. https://doi.org/10.1007/s00122-003-1350-9
Zong, X., Liu, X., Guan, J., Wang, S., Liu, Q., Paull, J. G., & Redden, R. (2009). Molecular variation among Chinese and global winter faba bean germplasm. Theoretical and Applied Genetics, 118(5), 971–978. https://doi.org/10.1007/s00122-008-0954-5
Zong, X., Ren, J., Guan, J., Wang, S., Liu, Q., Paull, J. G., & Redden, R. (2010). Molecular variation among Chinese and global germplasm in spring faba bean areas. Plant Breeding, 129(5), 508–513. https://doi.org/10.1111/j.1439-0523.2009.01718.x
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Nurmansyah, Alghamdi, S.S., Migdadi, H.M., Afzal, M. (2023). Application of Molecular Markers on Assessing Genetic Diversity in Faba Bean. In: Raina, A., Wani, M.R., Laskar, R.A., Tomlekova, N., Khan, S. (eds) Advanced Crop Improvement, Volume 2. Springer, Cham. https://doi.org/10.1007/978-3-031-26669-0_11
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