Abstract
Indonesia has enormous genetic biodiversity, especially for underutilised tropical fruits. However, these fruits have limited genetic information, such as genome databases. Furthermore, these fruits should be a source of germplasm that can be utilised for crop improvement and new fruits with much more nutritional compounds than others. Since multi-omics technology is one of the powerful tools for life sciences ranging from genomics to metabolomics, generating data is fast and extensive due to continued significant developments. Multi-omics approaches such as genomic, transcriptomic, and metabolomics studies have been carried out on several underutilised fruits. The RujakBase (http://rujakbase.id/) is a resource to provide a valuable repository for basic, translational, and applied research in underutilised tropical fruits. Recently, RujakBase only collected underutilised Indonesian fruits such as Menteng (Baccaurea motleyana), Nangkadak (Artocarpus nangkadak), Rambutan (Nephelium lappaceum), Salak Sidempuan (Salacca sumatrana), Gandaria (Bouea macrophylla), Lobi-lobi (Flacourtia inermis), Duku (Lansium domesticum), Matoa (Pometia pinnata), Kedondong (Spondias dulcis), Jambu Air (Syzygium samarangense), Sentul (Sandoricum koetjape), Kasturi Mango (Mangifera casturi), and Kura-kura Durian (Durio testudinarius). RujakBase project has been registered to the DDBJ Umbrella BioProject with accession number PRJDB726. Comprehensive omics research for underutilised fruit at this time will impact the progress of underutilised fruit as a potential fruit of the future that can be used for conservation, cultivation, and commercialisation.
This is a preview of subscription content, log in via an institution to check access.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Similar content being viewed by others
References
Agusri et al (2021) Characterization of genes encoding key enzymes involved in sugar metabolism of matoa (Pometia pinnata). IOP Conf Ser Earth Environ Sci 694:012066
Anggraheni YGD, Adi EBM, Wibowo H, Mulyaningsih, ES (2019) Analisis keragaman jambu air (Syzygium sp.) koleksi kebun plasma nutfah Cibinong berdasarkan morfologi dan RAPD. Biopropal Industri 10(2)
Badruzaman E, Soetoro S, Hardiyanto T (2017) Analisis saluran pemasaran buah duku. Jurnal Agroinfo Galuh 4(3):330–337
Darmawan ARB (2015) Review: Usaha peningkatan kualitas mangga kasturi (Mangifera casturi) dengan modifikasi budi daya tanaman. Pros Sem Nas Masy Biodiv Indon 1(4):894–899
Efendi D, Sari HP, Suwarno WB et al (2022) Genetic diversity of Lansium parasiticum (Osbeck) K. C. Sahni & Bennet accessions based on vegetative morphological characters and simple sequence repeat markers. Genet Resour Crop Evol. https://doi.org/10.1007/s10722-021-01336-9
Gower DJ, Johnson KG, Richardson JE, Rosen BR, Ruber L, Williams ST (2012) Biotic Evolution and environmental change in Southeast Asia. Cambridge University Press, Cambridge
Halim HR, Hapsari DP, Junaedi A, Ritonga AW, Natawijaya A, Poerwanto R, Sobir WWD, Matra DD (2019) ‘Metabolomics dataset of underutilized Indonesian fruits; rambai (Baccaurea motleyana), nangkadak (Artocarpus nangkadak), rambutan (Nephelium lappaceum) and Sidempuan salak (Salacca sumatrana) using GCMS and LCMS‘. Data Brief 23:103706. https://doi.org/10.1016/j.dib.2019.103706
Hasan S, Hossain M, Akter R, Jamila M, Mazumder M, Rahman S (2009) DPPH free radical scavenging activity of some Bangladeshi medicinal plants. J Med Plants Res 3(11):875–879
Heliawati L (2018) Kandungan Kimia dan Bioaktivitas Tanaman Kecapi. PPS UNPAK PRESS, Bogor
Kostermans AJGH (1958) The genus Durio Adans (Bombac.). Reinwardtia 4(3):387–460
Koubala BB, Kansci G, Ralet MC (2018) Ambarella—Spondias cytherea. Exotic fruits reference guide. https://doi.org/10.1016/B978-0-12-803138-4.00005-8
Kusmana C, Hikmat A (2015) Keanekaragaman Hayati Flora di Indonesia. Jurnal Pengelolaan Sumberdaya Alam Dan Lingkungan 5(2):187. https://doi.org/10.29244/JPSL.5.2.187
Lely N (2016) Efektifitas beberapa fraksi daun matoa (Pometia pinnata JR Forst. & G. Forst.) sebagai antimikroba. Jurnal Ilmiah Bakti Farmasi 1(1):51–59
Lim TK (2013) Edible medicinal and non-medicinal plants, vol 6. Springer, Dordrecht Heidelberg, London
Magandhi et al (2021) Development and characterisation of Simple Sequence Repeats (SSRs) markers in durian kura-kura (Durio testudinarius Becc.) using NGS data. IOP Conf Ser Earth Environ Sci 948:012082
Mahisworo (2004) Budidaya Rambutan, Penebar Swadaya, Jakarta
Matra DD, Fathoni MAN, Majiidu M, Wicaksono H, Sriyono A, Gunawan G, Susanti, H Sari R, Fitmawati F, Siregar IZ, Widodo WD, Poerwanto R (2021) The genetic variation and relationship among the natural hybrids of Mangifera casturi Kosterm. Sci Rep 11(1). https://doi.org/10.1038/S41598-021-99381-Y
Matra DD, Ritonga AW, Natawijaya A, Poerwanto R, Sobir WWD, Inoue E (2019a) ‘Dataset of the first de novo transcriptome assembly of the arillode of Baccaurea motleyana‘. Data Brief 22:332–335. https://doi.org/10.1016/J.DIB.2018.12.031
Matra DD, Ritonga AW, Natawijaya A, Poerwanto R, Sobir SUJ, Widodo WD, Inoue E (2019b) Datasets for genome assembly of six underutilized Indonesian fruits. Data Brief 22:960–963.https://doi.org/10.1016/J.DIB.2018.12.070
Matra DD, Ritonga AW, Natawijaya A, Poerwanto R, Sobir WWD, Inoue E (2019c) Dataset from de novo transcriptome assembly of Nephelium lappaceum aril. Data Brief 22:566–569.https://doi.org/10.1016/J.DIB.2018.12.034
Morton J (1987) Fig 47 50 Fruits of warm climates Julia F. Morton Miami, FL
Nurmayani et al (2021) ‘Characterization of rambai (Baccaurea motleyana) genes putatively involved in sugar metabolism. IOP Conf Ser Earth Environ Sci 694:012067
Pelima NJ (2016) Kajian pengembangan tanaman Flacourtia inermis Roxb. Jurnal Envira 1(1):34–39
Saleh M, Mawardi EW, Hatmoko D (2007) Keanekaragaman Flora dan Buah-Buahan Eksotik Lahan Rawa. Balai Penelitian Pertanian Lahan Rawa, Banjar Baru
Sari HP et al (2020) Mining and characterization of genomic-based microsatellite markers in duku (Lansium domesticum). IOP Conf Ser Earth Environ Sci 457:012083
Silaban et al (2021) Isolation and characterization genes in lobi-lobi (Flacourtia inermis) related to sugar metabolism. IOP Conf Ser Earth Environ Sci 694:012068
Supriatna S (2010) Teknologi pembibitan duku dan prospek pengembangannya. Jurnal Litbang Pertanian 29(1):19–24
Susilo J (2014) Sukses Bertanam Jambu Biji dan Jambu air. Pustaka Baru Press, Yogyakarta
Tropical Plants Database (2020) The reference manual of woody plant propagation. Tropical plants database
Uji T (2004) Keanekaragaman jenis, plasma nutfah, dan potensi buah-buahan asli Kalimantan. BioSMART 6(2):117–125
Umam MN, Poerwanto R, Matra DD (2022) Morphological and phytochemical characterisation of Lobi-lobi Fruit (Flacourtia inermis) at Each Maturity Stage (unpublished)
Yang Y, Saand MA, Huang L, Abdelaal WB, Zhang J, Wu Y, Li J, Sirohi MH, Wang F (2021) Applications of multi-omics technologies for crop improvement. Front Plant Sci 3(12):563–953
Zaini NAM, Osman A, Hamid AA, Ebrahimpour A, Saari N (2013) Purification and characterization of membrane-bound polyphenoloxidase (mPPO) from snake fruit [Salacca zalacca (Gaertn.) Voss]. Food Chem 136(2):407–414
Zulfina et al (2021) Characterization of secondary metabolites in kasturi mango (Mangifera casturi) using gas chromatography-mass spectrometry. IOP Conf Ser Earth Environ. Sci 948012059
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2022 The Author(s), under exclusive license to Springer Nature Switzerland AG
About this chapter
Cite this chapter
Matra, D.D., Adrian, M., Poerwanto, R. (2022). Underutilised Fruit Tree Genomes from Indonesia. In: Chapman, M.A. (eds) Underutilised Crop Genomes . Compendium of Plant Genomes. Springer, Cham. https://doi.org/10.1007/978-3-031-00848-1_10
Download citation
DOI: https://doi.org/10.1007/978-3-031-00848-1_10
Published:
Publisher Name: Springer, Cham
Print ISBN: 978-3-031-00847-4
Online ISBN: 978-3-031-00848-1
eBook Packages: Biomedical and Life SciencesBiomedical and Life Sciences (R0)