Skip-SCSE Multi-scale Attention and Co-learning Method for Oropharyngeal Tumor Segmentation on Multi-modal PET-CT Images

  • Conference paper
  • First Online:
Head and Neck Tumor Segmentation and Outcome Prediction (HECKTOR 2021)

Abstract

One of the primary treatment options for head and neck cancer is (chemo)radiation. Accurate delineation of the contour of the tumors is of great importance in the successful treatment of the tumor and in the prediction of patient outcomes. With this paper we take part in the HECKTOR 2021 challenge and we propose our methods for automatic tumor segmentation on PET and CT images of oropharyngeal cancer patients. To achieve this goal, we investigated different deep learning methods with the purpose of highlighting relevant image and modality related features, to refine the contour of the primary tumor. More specifically, we tested a Co-learning method [1] and a 3D Skip Spatial and Channel Squeeze and Excitation Multi-Scale Attention method (Skip-scSE-M), on the challenge dataset. The best results achieved on the test set were 0.762 mean Dice Similarity Score and 3.143 median of the Hausdorf Distance at 95\(\%\).

Aicrowd Group Name: “umcg”.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Subscribe and save

Springer+ Basic
EUR 32.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or Ebook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Chapter
EUR 29.95
Price includes VAT (Germany)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
EUR 64.19
Price includes VAT (Germany)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
EUR 80.24
Price includes VAT (Germany)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free ship** worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Similar content being viewed by others

References

  1. Xue, Z., et al.: Multi-modal co-learning for liver lesion segmentation on PET-CT images. IEEE Trans. Med. Imaging. https://doi.org/10.1109/TMI.2021.3089702

  2. Chow, L.Q.M.: Head and Neck Cancer. N Engl. J. Med. 382(1), 60–72 (2020). PMID: 31893516. https://doi.org/10.1056/NEJMra1715715

  3. Yeh, S.A.: Radiotherapy for head and neck cancer. Semin. Plast. Surg. 24(2), 127–136 (2010). https://doi.org/10.1055/s-0030-1255330

    Article  Google Scholar 

  4. Gudi, S., et al.: Interobserver variability in the delineation of gross tumour volume and specified organs-at-risk during IMRT for head and neck cancers and the impact of FDG-PET/CT on such variability at the primary site. J. Med. Imaging Radiat. Sci. 48(2), 184–192 (2017)

    Article  Google Scholar 

  5. Andrearczyk, V., et al.: Automatic segmentation of head and neck tumors and nodal metastases in PET-CT scans. In: Medical Imaging with Deep Learning (MIDL) (2020)

    Google Scholar 

  6. Moe, Y.M., et al.: Deep learning for automatic tumour segmentation in PET/CT images of patients with head and neck cancers. Medical Imaging with Deep Learning (2019)

    Google Scholar 

  7. Andrearczyk, V., et al.: Overview of the HECKTOR challenge at MICCAI 2021: automatic head and neck tumor segmentation and outcome prediction in PET/CT images. In: Andrearczyk, V., Oreiller, V., Hatt, M., Depeursinge, A. (eds.) HECKTOR 2021. LNCS, vol. 13209, pp. 1–37. Springer, Cham (2022)

    Google Scholar 

  8. Oreiller, V., et al.: Head and Neck Tumor Segmentation in PET/CT: The HECKTOR Challenge, Medical Image Analysis (2021). (under revision)

    Google Scholar 

  9. Abraham, N., Khan, N.M.: A novel Focal Tversky loss function with improved attention U-Net for lesion segmentation, ar**v preprint ar**v:1810.07842 (2018)

  10. Islam, M., Wijethilake, N., Ren, H.: Glioblastoma multiforme prognosis: MRI missing modality generation, segmentation and radiogenomic survival prediction. Comput. Med. Imaging Graph. 91, 101906 (2021)

    Google Scholar 

Download references

Acknowledgement

We would like to thank the Center for Information Technology of the University of Groningen for their support and for providing access to the Peregrine high performance computing cluster.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Alessia De Biase .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2022 Springer Nature Switzerland AG

About this paper

Check for updates. Verify currency and authenticity via CrossMark

Cite this paper

De Biase, A. et al. (2022). Skip-SCSE Multi-scale Attention and Co-learning Method for Oropharyngeal Tumor Segmentation on Multi-modal PET-CT Images. In: Andrearczyk, V., Oreiller, V., Hatt, M., Depeursinge, A. (eds) Head and Neck Tumor Segmentation and Outcome Prediction. HECKTOR 2021. Lecture Notes in Computer Science, vol 13209. Springer, Cham. https://doi.org/10.1007/978-3-030-98253-9_10

Download citation

  • DOI: https://doi.org/10.1007/978-3-030-98253-9_10

  • Published:

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-030-98252-2

  • Online ISBN: 978-3-030-98253-9

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics

Navigation