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Metatranscriptomics and Metaproteomics for Microbial Communities Profiling

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Unravelling the Soil Microbiome

Part of the book series: SpringerBriefs in Environmental Science ((BRIEFSENVIRONMENTAL))

Abstract

Metatranscriptomics and metaproteomics are major breakthroughs of the next-generation sequencing technologies. Metatranscriptomics and metaproteomics not only provide information about the taxonomic structure of the microorganisms in soil but also provide information about their functional attributes and diversity. Gene expression under varying environmental conditions can be analysed by polymerase chain reactions and microarray. Similarly, techniques such as metatranscriptomics can be used for genome-wide gene expression analysis, providing novel insights about the ecology of the microorganism-mediated processes. In the present chapter we have highlighted the importance, benefits, challenges, process, and procedures of metatranscriptomics and metaproteomics for analysing microbial communities from diverse environments. Metatranscriptomics and metaproteomics have carried out significant revolutions in the field of microbial ecology via exploring the plant–microbe and microbe–microbe interactions.

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Authors and Affiliations

  1. Institute of Environment & Sustainable Development, Banaras Hindu University, Varanasi, Uttar Pradesh, India

    Rama Kant Dubey, Vishal Tripathi, Rajan Chaurasia & Purushothaman Chirakkuzhyil Abhilash

  2. Chhattisgarh Swami Vivekananda Technical University, Bhilai, Chhattisgarh, India

    Ratna Prabha

  3. ICAR-National Bureau of Agriculturally Important Microorganisms, Mau Nath Bhanjan, Uttar Pradesh, India

    Dhananjaya Pratap Singh

  4. National Academy of Agricultural Research Management, Hyderabad, Telangana, India

    Ch. Srinivasa Rao

  5. Department of Applied Biology, University of Sharjah, Sharjah, United Arab Emirates

    Ali El-Keblawy

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  1. Rama Kant Dubey
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Dubey, R.K. et al. (2020). Metatranscriptomics and Metaproteomics for Microbial Communities Profiling. In: Unravelling the Soil Microbiome. SpringerBriefs in Environmental Science. Springer, Cham. https://doi.org/10.1007/978-3-030-15516-2_5

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