Putting Plant Roots at Light: Temporal Imaging of Plant Roots and Soil Water with a Light Transmission Technique for Linking Water and Root Observations to Soil–Plant Models

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Plant Systems Biology

Part of the book series: Methods in Molecular Biology ((MIMB,volume 2395))

Abstract

Estimating how the “hidden half” of plants, that is the roots, take up water or the influences of root system architecture or root physiological properties (such as root hydraulic conductance) on efficiency of water uptake is of prime importance for improving crops against water deficits. To unravel soil–root interactions for water, we describe a system that enables a dynamic imaging of the soil water content and of the root system, from the single root to the whole root system scales.

This system uses plants grown in rhizotrons filled with sandy soil and is based on the variable attenuation of the intensity of light transmitted through the rhizotron with soil water content (the rhizotron is nearly translucent when saturated and becomes darker as soil water content decreases). Images of the transmitted light during plant water uptake (or exudation) phases are recorded with a camera, showing a qualitative pattern of water content variations. The gray levels of the image pixels are then quantitatively related to water content with a calibration.

This system is affordable and can be easily implemented without specific equipment. It is scalable and quick to allow the phenoty** of a range of plant genotypes relative to their water uptake pattern. This pattern can be then related with root system properties (soil colonization, root architecture ) at different plant stages. In combination with modeling , imaging results help in obtaining physiological parameters such as root hydraulic conductivity, distributed root water uptake rates or root xylem water potential. Combination of modeling and experiment further helps in testing biological and physiological assumptions and in predicting the uptake behavior of plants in the field.

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References

  1. Hignett C, Evett SR (2002) Neutron thermalization. In: Dane JH, Topp GC (eds) Methods of soil analysis – Part 4 Physical Methods, section 3.1.3.10. SSSA book series, vol 5. Wiley, Hoboken, New Jersey. pp 501–520

    Google Scholar 

  2. Li Y, Fuchs M, Cohen S, Cohen Y, Wallach R (2002) Water uptake profile response of corn to soil moisture depletion. Plant Cell Environ 25:491–500

    Article  Google Scholar 

  3. Smit AL, Bengough AG, Engels C, Noordwijk M, van Pellerin S, van de Geijn SC (2000) Root methods: a handbook. Springer, New York, p 594

    Book  Google Scholar 

  4. Granier A (1987) Evaluation of transpiration in a Douglas-fir stand by means of sap flow measurements. Tree Physiol 3:309–320

    Article  CAS  Google Scholar 

  5. North GB, Nobel PS (1995) Hydraulic conductivity of concentric root tissues of Agave deserti Engelm under wet and drying conditions. New Phytol 130:47–57

    Article  Google Scholar 

  6. Frensch J, Steudle E (1989) Axial and radial hydraulic resistance to roots of maize (Zea mays L.). Plant Physiol 91:719–726

    Article  CAS  Google Scholar 

  7. Miyamoto N, Steudle E, Hirasawa T, Lafitte R (2001) Hydraulic conductivity of rice roots. J Exp Bot 52:1835–1846

    Article  CAS  Google Scholar 

  8. Sanderson J (1983) Water uptake by different regions of the barley root pathways of radial flow in relation to development of the endodermis. J Exp Bot 34:240–253

    Article  Google Scholar 

  9. Varney GT, Canny MJ (1993) Rates of water uptake into the mature root system of maize plants. New Phytol 123:775–786

    Article  Google Scholar 

  10. Hainsworth JM, Aylmore LAG (1983) The use of computer-assisted tomography to determine spatial distribution of soil-water content. Aust J Soil Res 21:435–443

    Article  Google Scholar 

  11. Hainsworth JM, Aylmore LAG (1986) Water extraction by single plant roots. Soil Sci Soc Am J 50:841–848

    Article  Google Scholar 

  12. Tracy SR, Roberts J, Black CR, McNeill A, Davidson R, Mooney SJ (2010) The X-factor: visualizing undisturbed root architecture in soils using X-ray computed tomography. J Exp Bot 61:311–313

    Article  CAS  Google Scholar 

  13. Zappala S, Mairhofer S, Tracy S, Sturrock CJ, Bennett M, Pridmore T, Mooney SJ (2013) Quantifying the effect of soil moisture content on segmenting root system architecture in X-ray computed tomography images. Plant Soil 370:35–45

    Article  CAS  Google Scholar 

  14. Pierret A, Doussan C, Garrigues E, Mc KJ (2003) Observing plant roots in their environment: current imaging options and specific contribution of two-dimensional approaches. Agronomie 23:471–479

    Article  Google Scholar 

  15. Pohlmeier A, Oros-Peusquens A, Javaux M, Menzel MI, Vanderborght J, Kaffanke J, Romanzetti S, Lindenmair J, Vereecken H, Shah NJ (2008) Changes in soil water content resulting from Ricinus root uptake monitored by magnetic resonance imaging. Vadose Zone J 7:1010–1017

    Article  Google Scholar 

  16. Nakanishi TM, Okuni Y, Hayashi Y (2005) Water gradient profiles at bean plant roots determined by neutron beam analysis. J Radioanal Nucl Chem 264:313–317

    Article  Google Scholar 

  17. Esser HG, Carminati A, Vontobel P, Lehmann EH, Oswald SE (2010) Neutron radiography and tomography of water distribution in the root zone. J Plant Nutr Soil Sci 173:757–764

    Article  CAS  Google Scholar 

  18. Glass RJ, Steenhuis TS, Parlange JY (1989) Wetting front instability. 2. experimental-determination of relationships between system parameters and two-dimensional unstable flow field behavior in initially dry porous-media. Water Resour Res 25:1195–1207

    Article  Google Scholar 

  19. Garrigues E (2002). Prélèvement hydrique par une architecture racinaire: imagerie quantitative et modélisation des transferts d’eau dans le système sol-plante, Ph. D. Thesis, Institut National Agronomique Paris-Grignon

    Google Scholar 

  20. Garrigues E, Doussan C, Pierret A (2006) Water uptake by plant roots: I—formation and propagation of a water extraction front in mature root systems as evidenced by 2D light transmission imaging. Plant Soil 283:83–98

    Article  CAS  Google Scholar 

  21. Lobet G (2013). Regulation of water flow in the soil-root domain, Ph.D. thesis, Université Catholique de Louvain

    Google Scholar 

  22. Srayeddin I, Doussan C (2009) Estimation of the spatial variability of root water uptake of maize and sorghum at the field scale by electrical resistivity tomography. Plant Soil 319:185–207

    Article  CAS  Google Scholar 

  23. Doussan C, Pierret A, Garrigues E, Pagès L (2006) Water uptake by plant roots: II - modelling of water transfer in the soil root-system with explicit account of flow within the root system—comparison with experiments. Plant Soil 283:99–117

    Article  CAS  Google Scholar 

  24. Tidwell VC, Glass RJ (1994) X ray and visible light transmission for laboratory measurement of two-dimensional saturation fields in thin-slab systems. Water Resour Res 30(11):2873–2882

    Article  Google Scholar 

  25. Lobet G, Draye X (2013) Novel scanning procedure enabling the vectorization of entire rhizotron-grown root systems. Plant Methods 9:1

    Article  Google Scholar 

  26. Schindelin J, Arganda-Carreras I, Frise E et al (2012) Fiji: an open-source platform for biological-image analysis. Nat Methods 9(7):676–682. https://doi.org/10.1038/nmeth.2019

    Article  CAS  Google Scholar 

  27. Doussan C, Pagès L, Vercambre G (1998) Modelling of the hydraulic architecture of root systems: an integrated approach to water absorption - model description. Ann Bot 81:213–223

    Article  Google Scholar 

  28. Javaux M, Schröder T, Vanderborght J, Vereecken H (2008) Use of a three–dimensional detailed modeling approach for predicting root water uptake. Vadose Zone J 7:1079–1088

    Article  Google Scholar 

  29. Schneider CL, Attinger S, Delfs JO, Hildebrandt A (2010) Implementing small scale processes at the soil-plant interface—the role of root architectures for calculating root water uptake profiles. Hydrol Earth Syst Sci 14:279–289

    Article  Google Scholar 

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Acknowledgments

This work benefited from a grant INSU-CNRS “Programme National de Recherche en Hydrologie (PNRH)” 99-PNRH-39 and support from Agropolis Foundation.

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Correspondence to Claude Doussan .

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Doussan, C. (2022). Putting Plant Roots at Light: Temporal Imaging of Plant Roots and Soil Water with a Light Transmission Technique for Linking Water and Root Observations to Soil–Plant Models. In: Lucas, M. (eds) Plant Systems Biology. Methods in Molecular Biology, vol 2395. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-1816-5_11

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  • DOI: https://doi.org/10.1007/978-1-0716-1816-5_11

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  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-0716-1814-1

  • Online ISBN: 978-1-0716-1816-5

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