Abstract
Over the past decades, the selective breeding process has been accelerating with advances in molecular genetics and identification and analysis of genes partly associated with growth and development of organisms and specific performance traits of economic value. The objectives of the survey are to study calpain (CAPN) and calpastatin (CAST) gene polymorphisms and to analyze their associations with the production parameters in beef cattle livestock of the Kalmyk breed. Six single nucleotide polymorphisms (SNPs) including c.947C>G, g.43405930С>G, c.1800+169C>T, c.*479C>T, g.43406123G>A, and g.43422631G>A in the CAPN gene and two SNPs (с.484G>А and g.96121070G>А) in the CAST gene were identified. Three genotypes for each CAPN gene variation within polymorphisms were revealed, including genotypes CC, CG, and GG within polymorphisms c.947C>G and g.43405930С>G, genotypes CC, CT, and TT within s.1800+169C>T and s.*479C>T, and genotypes GG, GA, and AA within g.43406123G>A and g.43422631G>A. The CAST gene recognized genotypes GG, GA, and AA within polymorphisms c.484G>A and g.96121070G>A. Among the animals of the studied population, the highest frequencies of occurrence were observed in the CG, CT, and GA heterozygous genotypes for the CAPN gene within five polymorphisms c.947C>G, g.43405930С>G, c.1800+169C>T, g.43406123G>A, and g.43422631G>A, varied in the range of 42–51%. The GА heterozygous and GG homozygous genotypes for the CAST gene within polymorphisms c.484G>A and g.96121070G>A were characterized by the highest frequencies of occurrence, comprising 50 and 45%, respectively. The carriers of the CC homozygous genotype within the CAPN1 gene c.947C>G polymorphism were characterised by the highest liveweight, which was higher than that in the specimens with the CG and GG genotypes by 22.6 and 21.4%, respectively. The bull carriers of the CC and ST genotypes within the c.1800+169C>T polymorphism had greater live weight than the specimens of the TT genotype did, by 12.6 and 12.1%, respectively. In addition, it was greater in the animals of the GA heterozygous genotype within the g.43406123G>А polymorphism than that in the specimens of the GG and AA homozygous genotypes by 18.5 and 19.9%, respectively. Carriers of the GG genotype for the CAST gene within single polymorphism g.96121070G>A had greater liveweight than the animals of the GA and AA variants did by 6.73 and 5.3%, respectively.
REFERENCES
Dezhina, I.G., Arutyunyan, A.G., and Ponomarev, A.K., High-tech landscape of the cattle breeding industry in Russia, Zh. Novoi Ekon. Assots., 2022, no. 1, pp. 240–248. https://doi.org/10.31737/2221-2264-2022-53-1-14
Samygin, D., Baryshnikov, N.G., and Mizyurkina, L.A., Scenario forecasting models for regional agricultural development, Ekon. Reg., 2019, vol. 15, no. 3, pp. 865–879. https://doi.org/10.17059/2019-3-18
Bogolyubova, L.P., Nikitina, S.V., Matveeva, E.A., et al., The pedigree composition in pedigree beef cattle breeding of Russia, Molochn. Myasn. Skotovod., 2021, no. 1, pp. 10–12. https://doi.org/10.33943/MMS.2021.29.45.002
Deikin, A.V., Selionova, M.I., Krivoruchko, A.Yu., et al., Genetic markers in beef sheep breeding, Vavilovskii Zh. Genet. Sel., 2016, vol. 20, no. 5, pp. 576–583. https://doi.org/10.18699/VJ16.139
Trukhachev, V.I., Selionova, M.I., Krivoruchko, A.Yu., et al., Genetic markers of meat productivity of sheep (Ovis aries L.). Message I. Myostatin, calpain, calpastatin, S-kh. Biol., 2018, vol. 53, no. 6, pp. 1107–1119. https://doi.org/10.15389/agrobiology.2018.6.1107rus
Yudin, N.S., Belonogova, N.M., and Larkin, D.M., Identification of genes involved in the control of white head coloration in eight Russian cattle breeds, Vavilovskii Zh. Genet. Sel., 2018, vol. 22, no. 2, pp. 217–223. https://doi.org/10.18699/VJ18.350
Yudin, N.S. and Larkin, D.M., Origin, breeding and adaptation of Russian cattle breeds according to genome-wide studies, Vavilovskii Zh. Genet. Sel., 2019, vol. 23, no. 5, pp. 559–568. https://doi.org/10.18699/VJ19.525
Abdel’manova, A.S., Fornara, M.S., Bardukov, N.V., et al., Genome-wide screening for SNPs associated with stature in diverse cattle breeds, Diversity, 2022, vol. 14, p. 692.
Dzhulamanov, K.M., Gerasimov, N.P., Dubovskova, M.P., et al., Polymorphisms of CAPN1, CAST, GDF5, TG5 and GH genes in Russian Hereford cattle, Bulg. J. Agric. Sci., 2019, vol. 25, no. 2, pp. 375–379.
Sedykh, T.A., Presnyakova, A.K., Pavlova, I.Yu., et al., Polymorphism of the calpain 1 CAPN1 530 gene in connection with the meat productivity of Hereford and Limousin breed, Dostizh. Nauki Tekh. APK, 2022, vol. 36, no. 11, pp. 62–68. https://doi.org/10.53859/02352451_2022_36_11_62
Epishko, O.A., Sonich, N.A., Pestis, V.K., et al., Polymorphism of MSTN, TG5, CAPN1 genes in beef cattle breeds of Belarus, in Sel’skoe khozyaistvo – problemy i perspektivy: sbornik nauchnykh trudov (Agriculture—Problems and Prospects: Collection of Scientific Papers), Pestis, V.K., Ed., Grodno: Grodn. Gos. Agrar. Univ., 2017, vol. 37, pp. 68–75.
Shevkhuzhev, A.F., Krivoruchko, A.Yu., Pogodaev, V.A., et al., Polymorphism of genes associated with meat quality in cattle (review), S-kh. Zh., 2022, no. 4, pp. 128–135. https://doi.org/10.25930/2687-1254/014.4.15.2022
Sadykov, M.M., Alikhanov, M.P., Simonov, A.G., et al., Meat qualities of Kalmyk cattle bulls in the foothills of Dagestan, Molochn. Myasn. Skotovod., 2020, no. 4, pp. 34–37. https://doi.org/10.33943/MMS.2020.19.55.008
Gorlov, I.F., Randelin, A.V., Slozhenkina, M.I., et al., Identification of SNP profiles and assessment of the breeding value of Kalmyk breed cattle using biochips, Zootekhniya, 2019, no. 4, pp. 9–11. https://doi.org/10.25708/ZT.2019.10.34.003
Kulintsev, V.V., Surov, A.I., and Shevkhuzhev, A.F., Beef cattle breeding in the Stavropol Territory, Molochn. Myasn. Skotovod., 2022, no. 2, pp. 6–11. https://doi.org/10.33943/MMS.2022.14.31.001
Funding
This work was supported by ongoing institutional funding. No additional grants to carry out or direct this particular research were obtained.
Author information
Authors and Affiliations
Corresponding author
Ethics declarations
ETHICS APPROVAL AND CONSENT TO PARTICIPATE
The animal-related experiments were conducted in accordance with the Directive 2010/63/EU of the European Parliament and the Council on the protection of animals used for scientific surveys. The sample collection and survey objective protocols were approved by the Institutional Animal Care and Use Committee, All-Russia Research Institute of Sheep and Goat Breeding, Stavropol, Russian Federation (Decision no. 2023–0045, April 14, 2023).
CONFLICT OF INTEREST
The authors of this work declare that they have no conflict of interests.
Additional information
Translated by O. Zhiryakova
Publisher’s Note.
Allerton Press remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
About this article
Cite this article
Kulintsev, V.V., Shevkhuzhev, A.F., Krivoruchko, A.Y. et al. Polymorphisms of Calpain and Calpastatin Cascade Genes in the Beef Cattle Population. Russ. Agricult. Sci. 49 (Suppl 2), S320–S325 (2023). https://doi.org/10.3103/S1068367423080104
Received:
Revised:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.3103/S1068367423080104