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Genetic Diversity of Kalopanax septemlobus (Thunb.) Koidz. at the Northern Edge of the Range according to Chloroplast DNA Sequencing Data

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Abstract

An analysis of nucleotide polymorphism of intergenic spacers psbA–trnH, rpl32–trnL, and trnS–trnfM of chloroplast DNA in accessions of Kalopanax septemlobus at the northern end of the range (Russian Far East) was carried out. The genetic diversity of the total sample from the south of Primorsky krai was very low (h = 0.142, π = 0.0001), and the genetic diversity of the total sample from Sakhalin Island was medium (h = 0.600, π = 0.0018). Analysis of molecular variance showed that about 86% of all genetic variability is accounted for by differences between the two geographic regions (ΦST = 0.857, P < 0.0001). Nucleotide substitutions and variations of indels revealed three haplotypes (H1–H3), of which the H3 haplotype was found only on Sakhalin Island. The haplotype H1 is widespread in Primorsky krai, whose frequency was 92.4%. The observed variability of K. septemlobus in the Russian Far East reflects by history of its biogeography.

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REFERENCES

  1. Ohashi, H., Nomenclature of Kalopanax septemlobus (Thunb. ex Murray) Koidzumi and classification of its infraspecific taxa (Araliaceae), J. Jpn. Bot., 1994, vol. 69, pp. 28—31.

    Google Scholar 

  2. Chang, C.S., Kim, H., Kang, H.S., and Lee, D.K., A morphometric analysis of the eastern Asian Kalopanax septemlobus (Thunb.) Koidz. (Araliaceae), Bot. Bull. Acad. Sin., 2003, vol. 44, pp. 337—344.

    Google Scholar 

  3. Zhuravlev, Yu.N. and Kolyada, A.S., Araliaceae: zhen’shen’ i drugie (Araliaceae: Ginseng and Others), Vladivostok: Dal’nauka, 1996.

  4. Lee, D.K. and Kang, H.-S., Distribution of Kalopanax septemlobus and its growth in Northeast Asia, Euras. J. For. Res., 2002, vol. 2, no. 5, pp. 85—94.

    Google Scholar 

  5. Sakaguchi, S., Sakurai, S., Yamasaki, M., and Isagi, Y., How did the exposed seafloor function in postglacial northward range expansion of Kalopanax septemlobus? Evidence from ecological niche modelling, Ecol. Res., 2010, vol. 25, pp. 1183—1195.

    Article  Google Scholar 

  6. Krasnaya kniga Sakhalinskoi oblasti: Rasteniya (The Red Book of Sakhalin Oblast: Plants), Eremin, E.V., Ed., Yuzhno-Sakhalinsk: Sakhalinskoe Knizhnoe Izd., 2005.

  7. Krasnaya Kniga Rossiiskoi Federatsii (rasteniya i griby) (The Red Book of the Russian Federation (Plants and Fungi)), Moscow: Ministerstvo Prirodnykh Resursov i Ekologii Rossiiskoi Federatsii, 2008.

  8. Nedoluzhko, V.A., Castor aralia Kalopanax septemlobus (Thunb.) Koidz., in Biologiya redkikh sosudistykh rastenii sovetskogo Dal’nego Vostoka (Biology of Rare Vascular Plants in the Soviet Far East), Vladivostok: Dal’nevost. Otd. Akad. Nauk USSR, 1990, pp. 132—138.

  9. Hyun, T.K. and Kim, J.-S., The pharmacology and clinical properties of Kalopanax pictus, J. Med. Plants Res., 2009, vol. 3, no. 9, pp. 613—620.

    CAS  Google Scholar 

  10. Gladkova, G.A., Sibirina, L.A., and Butovets, G.N., Rare plant communities with castor aralia on the Russky Island (Southern Primorye), Vestn. Dal’nevost. Otd. Ross. Akad. Nauk, 2015, no. 1, pp. 34—44.

  11. Huh, M.K., Jung, S.D., Moon, H.K., et al., Comparison of genetic diversity and population structure of Kalopanax pictus (Araliaceae) and its thornless variant using RAPD, Korean J. Med. Crop Sci., 2005, vol. 13, no. 2, pp. 69—74.

    Google Scholar 

  12. Huh, M.K., Comparison of genetic diversity and relationships of genus Kalopanax using ISSR markers, J. Life Sci., 2006, vol. 16, no. 5, pp. 740—745.

    Article  Google Scholar 

  13. Sakaguchi, S., Takeuchi, Y., Yamasaki, M., et al., Lineage admixture during postglacial range expansion is responsible for the increased gene diversity of Kalopanax septemlobus in a recently colonised territory, Heredity, 2011, vol. 107, pp. 338—348.

    Article  CAS  Google Scholar 

  14. Jung, S.D., Huh, H.W., Hong, J.H., et al., Genetic diversity and population structure of Kalopanax pictus (Araliaceae), J. Plant Biol., 2003, vol. 46, no. 4, pp. 255—262.

    Article  Google Scholar 

  15. Sakaguchi, S., Qiu, Y.-X., Liu, Y.-H., et al., Climate oscillation during the Quaternary associated with landscape heterogeneity promoted allopatric lineage divergence of a temperate tree Kalopanax septemlobus (Araliaceae) in East Asia, Mol. Ecol., 2012, vol. 21, pp. 3823—3838. https://doi.org/10.1111/j.1365-294X.2012.05652.x

    Article  PubMed  Google Scholar 

  16. Isabel, N., Tremblay, L., Michaud, M., et al., RAPDs as an aid to evaluate the genetic integrity of somatic embryogenesis derived populations of Picea mariana (Mill.) B.S.P., Theor. Appl. Genet., 1993, vol. 86, pp. 81—87.

    Article  CAS  Google Scholar 

  17. Shaw, J., Lickey, E.B., Beck, J.T., et al., The tortoise and the hare II: relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis, Am. J. Bot., 2005, vol. 92, pp. 142—166. https://doi.org/10.3732/ajb.92.1.142

    Article  CAS  PubMed  Google Scholar 

  18. Shaw, J., Lickey, E.B., Schilling, E.E., and Small, R.L., Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: the tortoise and the hare III, Am. J. Bot., 2007, vol. 94, pp. 275—288.

    Article  CAS  Google Scholar 

  19. Kumar, S., Stecher, G., Li, M., Knyaz, C., and Tamura, K., MEGA X: molecular evolutionary genetics analysis across computing platforms, Mol. Biol. Evol., 2018, vol. 35, pp. 1547—1549.

    Article  CAS  Google Scholar 

  20. Excoffier, L. and Lischer, H.E.L., Arlequin Suite ver. 3.5: a new series of programs to perform population genetics analyses under Linux and Windows, Mol. Ecol. Resour., 2010, vol. 10, pp. 564—567. https://doi.org/10.1111/j.1755-0998.2010.02847.x

    Article  PubMed  Google Scholar 

  21. Bandelt, H.-J., Forster, P., and Rohl, A., Median-joining networks for inferring intraspecific phylogenies, Mol. Biol. Evol., 1999, vol. 16, no. 1, pp. 37—48.

    Article  CAS  Google Scholar 

  22. Nechaev, V.A. and Gamova, T.V., Ptitsy Dak’nego Vostoka Rossii (annotirovannyi katalog) (Birds of Russian Far East: an Annotated Catalogue), Vladivostok: Dal’nauka, 2009.

  23. Nechaev, V.A. and Nechaev, A.A., Family Araliaceae and the carpophagous birds in the south of Far East, Vestn. Dal’nevost. Otd. Ross. Akad. Nauk, 2015, no. 1, pp. 63—71.

  24. Pavlyutkin, B.I., Chekryzhov, I.Yu., and Petrenko, T.I., Geologiya i flora nizhnego miotsena yuga Primor’ya (Geology and Flora of Lower Miocene in the South Primorye), Vladivostok: Dalnauka, 2012.

  25. Krestov, P.V., Barkalov, V.Yu., Omelko, A.M., et al., Relic complexes of vegetation in modern refugia of Northeast Asia, in Komarovskiye chteniya (Komarov Readings), 2009, issue 56, pp. 5—63.

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ACKNOWLEDGMENTS

The authors are grateful to V.Yu. Barkalov, A.S. Mayorova (NSCMB FEB RAS), E.M. Bulakh, and T.Yu. Gorpenchenko for help in collecting the material.

This study was carried out with the financial support of the program of the Presidium of the Russian Academy of Sciences “Far East” (project no. 18-4-011).

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Correspondence to E. A. Vasyutkina.

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Vasyutkina, E.A., Adrianova, I.Y. Genetic Diversity of Kalopanax septemlobus (Thunb.) Koidz. at the Northern Edge of the Range according to Chloroplast DNA Sequencing Data. Russ J Genet 57, 745–749 (2021). https://doi.org/10.1134/S1022795421060132

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