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Acute myeloid leukemia stem cell signature gene EMP1 is not an eligible therapeutic target

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Abstract

Background

Relapse in pediatric acute myeloid leukemia (pedAML) patients is known to be associated with residual leukemic stem cells (LSC). We have previously shown that epithelial membrane protein 1 (EMP1) is significantly overexpressed in LSC compared to hematological stem cell fractions. EMP1 was also documented as part of the 17-gene stemness score and a 6-membrane protein gene score, both correlating high EMP1 expression with worse overall survival. However, its potential as a therapeutic target in pedAML is still unexplored.

Methods

Association analyses of EMP1 expression with clinical and molecular AML characteristics were performed. Expression of EMP1 was evaluated in pedAML and cord blood samples. Expression in normal blood cells and tissues was evaluated by flow cytometry and immunohistochemistry, respectively.

Results

In silico analyses showed variable mRNA expression of EMP1 in multiple pedAML datasets, and a significant correlation between high EMP1 transcript levels and the presence of inv(16). Flow cytometry showed overexpression of EMP1 in pedAML samples, as well as expression in normal blood subsets. Importantly, immunohistochemistry revealed EMP1 expression in multiple normal tissues.

Conclusion

Although EMP1 presents as an interesting membrane-associated target in pedAML, its abundant expression in normal blood cells and tissues will impede it from further exploration as a therapeutic target.

Impact

  • EMP1 is highly expressed in multiple cancer types, but expression in acute myeloid leukemia (AML) and normal tissues is unexplored.

  • As EMP1 is investigated in other cancer types, expression in normal tissues and blood cells is relevant in predicting the success of EMP1-targeted therapies.

  • In this study, we showed expression of EMP1 in multiple tissues, predicting high on-target off-tumor toxicity, which will warn other researchers of possible toxicities when generating EMP1-targeted therapy.

  • Finally, we showed that high EMP1 expression is associated with better overall survival of pediatric AML patients, reducing the need for EMP1-targeted therapy.

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Fig. 1: Correlation of EMP1 expression with cytogenetic abnormalities and with outcome in patients from the TARGET database.
Fig. 2: Independent prognostic analysis of EMP1.
Fig. 3: EMP1 surface expression in pediatric acute myeloid leukemia patient and umbilical cord blood samples.
Fig. 4: EMP1 surface expression in white blood cell types.
Fig. 5: Immunohistochemical analysis of EMP1 expression in healthy tissue samples (n = 12).
Fig. 6: EMP1 expression in hematological cell lines.

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Data availability

All data generated or analyzed during this study are included in this published article [and its supplementary information files].

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Acknowledgements

Our gratitude goes to all patients and their parents for their participation in the study, as well as to the data managers involved in the clinical trials. The authors thank the Cord Blood Bank, the staff of all the involved Pediatric Hematology and Oncology sites, and the Pathology Department of Ghent University Hospital (Ghent, Belgium) for providing samples. A special thanks to Irem Kaya for the sample preparation of the immunohistochemistry analysis. The results published here are in whole or partly based upon data generated by the Therapeutically Applicable Research to Generate Effective Treatments (https://www.cancer.gov/ccg/research/genomesequencing/target) initiative, phs000218. The data used for this analysis are available at the Genomic Data Commons (https://portal.gdc.cancer.gov).

Funding

This research was funded by Kom op tegen Kanker (grants to B.D.M. and T.L.), vzw Kinderkankerfonds (grant to B.D.M.), and the Olivia Hendrickx Research Fund (grant to L.V.C.).

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Authors and Affiliations

Authors

Contributions

Conceptualization, L.V.C., B.D., T.L. and B.D.M.; methodology, L.V.C., J.D.W., M.H., M.V.D.L., E.T., and T.L.; formal analysis, L.V.C.; resources, A.U., A.V.D., L.D., C.C., T.L. and B.D.M.; writing—original draft preparation, L.V.C.; writing—review and editing, all authors; supervision, T.L and B.D.M.; funding acquisition, L.V.C., B.D.M. and T.L. All authors have read and agreed to the published version of the manuscript.

Corresponding author

Correspondence to Tim Lammens.

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Competing interests

All authors declare to have no potential conflicts of interest. The funders had no role in the design of the study; in the collection, analyses, or interpretation of data; in the writing of the manuscript; or in the decision to publish the results.

Consent Statement

The study was conducted according to the guidelines of the Declaration of Helsinki and approved by the Institutional Review Board (or Ethics Committee) of the Ethics Committee of the University Hospital of Ghent (EC2015-1443 1 April 2016 and EC2019-0294 20 March 2020). Informed consent was obtained from all subjects involved in the study.

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Van Camp, L., Depreter, B., De Wilde, J. et al. Acute myeloid leukemia stem cell signature gene EMP1 is not an eligible therapeutic target. Pediatr Res (2024). https://doi.org/10.1038/s41390-024-03341-x

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