Abstract
The (α/β)8 barrel proteins, in spite of having a common fold, do not show any sequence similarity. In order to understand the factors which are responsible for maintaining the common fold, the three-dimensional structures of 36 (α/β)8 barrel proteins are analyzed for the presence of identical amino acid clusters or physicochemically similar clusters. The results reveal 14 identical amino acid clusters and a large number of physicochemically similar clusters. Further analysis of the similar clusters points to the conservation of secondary structures, the presence of pairs of residues occupying topologically equivalent secondary structures, and the presence of certain key residues which may play a vital role in directing and stabilizing the (α/β)8 barrel fold.
Similar content being viewed by others
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
About this article
Cite this article
Selvaraj, S., Gromiha, M.M. An Analysis of the Amino Acid Clustering Pattern in (α/β)8 Barrel Proteins. J Protein Chem 17, 407–415 (1998). https://doi.org/10.1023/A:1022514400583
Published:
Issue Date:
DOI: https://doi.org/10.1023/A:1022514400583