This is a preview of subscription content, log in via an institution to check access.
Data availability
The whole genome project of Cedecea neteri strain A2 has been deposited in the National Center for Biotechnology Information (NCBI) database. CP134767-CP134768 are the GenBank accession numbers, the BioProject ID is PRJNA1015563 and the BioSample accession is SAMN37357990.
References
Ahmad H, Masroor T, Parmar SA, Panigrahi D (2021) Urinary tract infection by a rare pathogen Cedecea neteri in a pregnant female with Polyhydramnios: rare case report from UAE. BMC Infect Dis 21(1):637. https://doi.org/10.1186/s12879-021-06298-y
Chan KG, Tan WS (2017) Insights into Cedecea neteri strain M006 through complete genome sequence, a rare bacterium from aquatic environment. Stand Genomic Sci 12:40. https://doi.org/10.1186/s40793-017-0255-1
Chan KG, Tan KH, Yin WF, Tan JY (2014) Complete genome sequence of Cedecea neteri strain SSMD04, a bacterium isolated from pickled mackerel sashimi. Genome Announc 2(6):e01339–e01314. https://doi.org/10.1128/genomea.01339-14
Chen YX, Chen YS, Shi CM, Huang ZB, Zhang Y, Li SK, Li Y, Ye J, Yu C, Li Z, Zhang XQ, Wang J, Yang HM, Fang L, Chen Q (2018) SOAPnuke: a MapReduce acceleration-supported software for integrated quality control and preprocessing of high-throughput sequencing data. GigaScience 7(1):1–6. https://doi.org/10.1093/gigascience/gix120
Eddy SR (2011) Accelerated profile HMM searches. PLoS Comput Biol 7(10):e1002195. https://doi.org/10.1371/journal.pcbi.1002195
Hegde S, Nilyanimit P, Kozlova E, Anderson ER, Narra HP, Sahni SK, Heinz E, Hughes GL (2019) CRISPR/Cas9-mediated gene deletion of the ompA gene in symbiotic Cedecea neteri impairs biofilm formation and reduces gut colonization of Aedes aegypti mosquitoes. Plos Negl Trop Dis 13(12):e0007883. https://doi.org/10.1371/journal.pntd.0007883
Hyatt D, Chen GL, LoCascio PF, Land ML, Larimer FW, Hauser LJ (2010) Prodigal: prokaryotic gene recognition and translation initiation site identification. BMC Bioinformatics 11:119. https://doi.org/10.1186/1471-2105-11-119
Kaur T, Chadha A, Prakash NT, Reddy MS (2022) Plant growth promotion and selenium accumulation in Zea mays by rhizobacteria isolated from natural seleniferous soils. Clean-Soil Air Water 50(11):2100417. https://doi.org/10.1002/clen.202100417
Li A (2015) Identification of culturable endophytic bacteria and growth-promoting effect, isolated from the roots of Dendrobium sinense in Hainan. dissertation, University of Hainan
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R (2009) The sequence Alignment/Map format and SAMtools. Bioinformatics 25(16):2078–2079. https://doi.org/10.1093/bioinformatics/btp352
Liu ZL, Zhou SY, Zhang WL, Wu SJ, Chen XF, Wang XG, Hu HJ, Chen Q (2020) First report of Cedecea neteri causing yellow rot disease in Pleurotus Pulmonarius in China. PLANT DIS 105(4):1189. https://doi.org/10.1094/PDIS-09-20-1886-PDN
Seemann T (2014) Prokka: rapid prokaryotic genome annotation. Bioinformatics 30(14):2068–2069. https://doi.org/10.1093/bioinformatics/btu153
Tarmizi NAKA, Kushairi N, Phan CW, Sabaratnam V, Naidu M, David P (2022) β-Glucan-rich extract of gray oyster mushroom, Pleurotus Pulmonarius, improves object recognition memory and hippocampus morphology in mice fed a high-fat diet. J Med Food 25(3):230–238. https://doi.org/10.1089/jmf.2021.K.0121
Walker BJ, Abeel T, Shea T, Priest M, Abouelliel A, Sakthikumar S, Cuomo CA, Zeng QD, Wortman J, Young SK, Earl AM (2014) Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement. PLoS ONE 9(11):e112963. https://doi.org/10.1371/journal.pone.0112963
Wick RR, Judd LM, Gorrie CL, Holt KE (2017) Unicycler: resolving bacterial genome assemblies from short and long sequencing reads. PLoS Comput Biol 13(6):e1005595. https://doi.org/10.1371/journal.pcbi.1005595
Yan JJ, Liu YY, Wang RQ, Mukhtar I, Liu F, Lin ZY, Jiang YJ, **e BG (2019) First report of Cedecea neteri causing yellow sticky disease in Flammulina velutipes in China. PLANT DIS 103(5):1014–1015. https://doi.org/10.1094/PDIS-06-18-1039-PDN
Funding
This study was supported by Science and Technology Base and Talent Project of Guangxi (Grant No. Guike-AA21196003), Guangxi Academy of Agricultural Sciences Basic program (GNK2024YP076, GNK2022JM54), Guizhou Science and Technology Program (Grant Nos. 20201Y124, 2019 − 1410, HZJD [2022]001), China Agriculture Research System (CARS-20), and Program for Introducing Talents to Chinese Universities (111Program; D20023).
Author information
Authors and Affiliations
Corresponding authors
Ethics declarations
Ethical approval
The authors declare that the research complies with ethical standards.
Consent for publication
Publication has been approved by all co-authors.
Conflict of interest
The authors declare no conflict of interest.
Additional information
Publisher’s Note
Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Rights and permissions
Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.
About this article
Cite this article
Yi, B., Wu, S., Ouyang, H. et al. Complete genome resource of Cedecea neteri A2, the causal agent of Pleurotus pulmonarius yellow rot disease in Guangxi, China. J Plant Pathol (2024). https://doi.org/10.1007/s42161-024-01616-0
Received:
Accepted:
Published:
DOI: https://doi.org/10.1007/s42161-024-01616-0