Log in

Genotype by environment interaction and stability analysis using AMMI and GGE-biplot models for yield of Arabica coffee genotypes in south Ethiopia

  • Original Research
  • Published:
Journal of Crop Science and Biotechnology Aims and scope Submit manuscript

Abstract

Coffee yield is a complex quantitative trait whose expression is determined by genotype, environment, and genotype by environment interaction (GEI). Seventeen Arabica coffee genotypes were evaluated in twelve environments in south Ethiopia to analyze the extent of GEI effect on Arabica coffee yield and to identify the highest yielding and stable genotypes. The experiment was established using RCBD with three replications at each location. The results revealed significant differences among genotypes, environments, and GEI, with an explained proportion of variation of 3.26%, 71.74%, and 17.52%, respectively. According to GGE-biplot and AMMI models, G7, G16, G5, G14, G15, G12, G11, and G13 were identified as high-yielding genotypes. Likewise, E7, E1, E5, E3, and E11 were classified as favorable environments. According to the AMMI and GGE biplot models and various stability indices (AMMI stability value, cultivar superiority index, and yield stability index), G16 (AW7705) was the highest bean yielder in tons per hectare and the most stable genotype. Therefore, AW7705 was discovered to be a promising candidate, which can be considered desirable genotypes in further tests, to releasing a new variety for Arabica coffee growing regions of southern Ethiopia and other similar agro-ecologies elsewhere. G7 (AW105) was the most yielding but an unstable genotype and can be considered in the specific target environments. Since the environment and GEI explained significant variations in coffee yield, testing genotypes in diverse environments prior to deciding on any variety to use under wider agro-ecology is recommended for coffee breeders to identify stable and high-yielding coffee varieties.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Subscribe and save

Springer+ Basic
EUR 32.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or Ebook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5
Fig. 6
Fig. 7

Similar content being viewed by others

Data availability

The datasets generated during and/or analysed during the current study are available from the corresponding author on reasonable request.

References

  • Abrha GW, Kebede SA, Bedada LT, Berecha YG, Adugna GA (2022) Genotype by environment interaction and yield stability of coffee (Coffea arabica L.) genotypes evaluated in western Ethiopia. Plant Prod Sci. 25(4):467–483. https://doi.org/10.1080/1343943X.2022.2136722

    Article  Google Scholar 

  • Afework L (2017) Genotype x environment interaction and stability analysis of some promising ilu Ababora coffee (Coffea arabica L.) genotypes for yield and yield related traits in Southwestern Ethiopia. M.Sc. thesis. Jimma University department of horticulture and plant science, Ethiopia

  • Argaw T, Taye G (2018) Genotype by environment interaction analysis of Arabica coffee bean yield. Acad Res J Agric Sci Res 6:509–519 https://doi.org/10.14662/ARJASR2018.090

    Article  Google Scholar 

  • Asefa G (2022) GGE biplot analysis of genotype by environment interaction and yield stability analysis of Arabica coffee (Coffea arabica L.) diallel genotypes in south western Ethiopia. GSJ 10(3):1082–1100 (ISSN 2320-9186)

    Google Scholar 

  • Ayele A, Worku M, Bekele Y (2021) Trend, instability and decomposition analysis of coffee production in Ethiopia (1993–2019). Heliyon 7:1–7. https://doi.org/10.1016/j.heliyon.2021.e08022

    Article  CAS  Google Scholar 

  • Bacsi Z (2019) A yield stability index and its application for crop. Analecta Technica Szegedinensia 13(1):11–20 https://doi.org/10.14232/analecta.2019.1.11-20

    Article  Google Scholar 

  • Bacsi Z, Fekete-farkas M (2022) Coffee yield stability as a factor of food security. MDPI 11:1–19. https://doi.org/10.3390/%0Afoods11193036

    Article  Google Scholar 

  • Beksisa L (2021) GGE biplot analysis of genotype x environment interaction and bean yield stability of Arabica coffee (Coffee arabica L.) genotypes in southwestern Ethiopia. Am J BioSci 9(3):110–115. https://doi.org/10.11648/j.ajbio.20210903.16

    Article  Google Scholar 

  • Beksisa L, Alamerew S, Ayano A, Daba G (2018) Genotype environment interaction and yield stability of Arabica coffee (Coffea arabica L.) genotypes. Afr J Agric Res 13(4):210–219. https://doi.org/10.5897/AJAR2017.12788

    Article  Google Scholar 

  • Cheng YL, Lee CY, Huang YL, Buckner CA, Lafrenie RM et al (2018) Genotype × environment interaction: a prerequisite for tomato variety development. INTECH 11:1–23. https://doi.org/10.5772/intechopen.76011

    Article  Google Scholar 

  • Cheserek JJ, Ngugi K, Muthomi JW, Omondi CO, Ezekiel KN (2021) Green bean biochemical attributes of Arabusta coffee hybrids from Kenya using HPLC and soxhlet extraction methods. Aust J Crop Sci 15(2):201–208. https://doi.org/10.2147/ajcs.21.15.02.p2581

    Article  CAS  Google Scholar 

  • Davis AP (2011) Psilanthusmannii, the type species of Psilanthus, transferred to Coffea. Nord J Bot 29:471–472. https://doi.org/10.1111/j.1756-1051.2011.01113.x

    Article  ADS  Google Scholar 

  • Demissie MMK, GT (2011) Additive main effects and multiplicative interaction analysis of coffee germplasms from southern Ethiopia. Ethiop J Sci 34(1): 63–70 (ISSN: 0379–2897)

  • Egea-Gilabert C, Pagnotta MA, Tripodi P (2021) Genotype × environment interactions in crop breeding. J MDPI 11(8):2–5. https://doi.org/10.3390/agronomy11081644

    Article  Google Scholar 

  • EIAR (Ethiopian Institute of Agricultural Research) (2017) National coffee commodity research strategy of fifteen years (2016 -2030). Addis Ababa, Ethiopia

  • Endale T, Kufa T, Nestre A, Shimber T, Yilma Y et al (2008) Research on coffee field management. pp. 187–195. In: Adugna G, Belachew B, Shimber T, Taye E, Kufa T (eds) Proceedings of the workshop on four decades of coffee research and development in Ethiopia: a national workshop, 14–17 August 2007, Addis Ababa, Ethiopia

  • Enyew M, Feyissa T, Geleta M, Tesfaye K, Hammenhag C, Carlsson AS (2021) Genotype by environment interaction, correlation, AMMI, GGEbiplot and cluster analysis for grain yield and other agronomic traits in sorghum (Sorghum bicolor L Moench). PLoS ONE 16:1–10. https://doi.org/10.1371/journal.pone.0258211

    Article  CAS  Google Scholar 

  • FAO (Food and Agricultural Organization of United Nations) publications catalogue (2021) FAO office of communications publications catalogue 2021. Retrieved from https://doi.org/10.4060/cb4402en

  • Farshadfar E, Mahmodi N, Yaghotipoor A (2011) AMMI stability value and simultaneous estimation of yield and yield stability in bread wheat (Triticum aestivum L.). Aust J Crop Sci 5(13):1837–1844

    Google Scholar 

  • Farshadfar E, Safari H, Jamshidi B (2012) GGE biplot analysis of adaptation in wheat substitution lines. Int J Agric Crop Sci 4(13):877–881

    Google Scholar 

  • Gauch HG (1992) Statistical analysis of regional yield trials: AMMI analysis of factorial designs. Department of Soil, Crop & Atmospheric Sciences, College of Agriculture & Life Sciences, Cornell University, Ithaca, NY, USA. Elsevier Science Publishers, Netherlands

  • Hailemariam M, Tesfaye A (2019) Genotype X environment interaction by AMMI and GGE-biplot stability analysis in grain yield for soybean [(Glycine max L.) merrill] in Ethiopia. Int J For Hortic 5(4):10–21. https://doi.org/10.20431/2454-9487.0504002

    Article  Google Scholar 

  • ICO (International Coffee Organization) (2021) Coffee market report. https://www.ico.org/news/cmr-0121-e.pdf

  • Legesse A, Alamrew S, Tesfaye A (2022) Stability analysis of coffee (Coffea arabica L.) bean yield using GGE biplot in south western Ethiopia. Glob Sci J 8(1):36–42. https://doi.org/10.1164/j.ajbes.20220801.15

    Article  Google Scholar 

  • Lin CS, Binns MR (1988) A superiority measure of cultivar performance for cultivar× location data. Can J Plant Sci 68(1):193–198. https://doi.org/10.4141/cjps88-018

    Article  Google Scholar 

  • Luthra OP, Singh RK (1974) A comparison of different stability models in wheat. Theoret Appl Gen 45:143–149

    Article  CAS  Google Scholar 

  • Mahmodi N, Yaghotipoor A, Farshadfar E (2011) AMMI stability value and simultaneous estimation of yield and yield stability in bread wheat (Triticum aestivum’L.). Aust J Crop Sci. 5(13):1837–1844

    Google Scholar 

  • Marie L, Abdallah C, Campa C, Courtel P, Bordeaux M et al (2020) G × E interactions on yield and quality in Coffea arabica: new F1 hybrids outperform American cultivars. Euphytica 216(5):1–17. https://doi.org/10.1007/s10681-020-02608-8

    Article  CAS  Google Scholar 

  • Merga W (2021) An overview of genotype x environment interaction and yield stability analysis in applied plant breeding: great emphasis given to coffee (Coffea arabica L.). Int J Agril Res Innov Tech 11(2): 117–123. https://www.banglajol.info/index.php/IJARIT

  • Merga W (2022) Bean ield stability analysis of coffee (Coffea arabica L) genotypes in southwestern Ehiopia. Int J Recent Sci Res 13:1–8. https://doi.org/10.24327/IJRSR

    Article  Google Scholar 

  • Motebayenore E (2022) Review on coffee production constraints and opportunities in Ethiopia. J Hortic 9(1):1–7

    Google Scholar 

  • NASA (National Aeronautics and Space Administration) (2023) ArcGIS World Geocoding Service Power data access viewer. Retrieved from https://power.larc.nasa.gov/data-access-viewer/. Accessed 13 June 2023

  • Ndikumana J (2022) Agro-morphological characterization of arabica coffee cultivars in burundi. MSc. thesis. Jomo kenyatta university, Nirobi, Keniya

  • Neisse AC, Kirch JL (2018) AMMI and GGE biplot for genotype × environment interaction: a medoid—based hierarchical cluster analysis approach for high—dimensional data. Biometrical Lett 55(2):97–121. https://doi.org/10.2478/bile-2018-0008

    Article  Google Scholar 

  • Partelli FL, da Silva FA, Covre AM et al (2022) Adaptability and stability of Coffea canephora to dynamic environments using the Bayesian approach. Sci Rep 12:11608. https://doi.org/10.1038/s41598-022-15190-x

    Article  CAS  PubMed  PubMed Central  ADS  Google Scholar 

  • Pour-Aboughadareh A, Khalili M, Poczai P, Olivoto T (2022) Stability indices to deciphering the Genotypeby-Environment Interaction (GEI) effect: an applicable review for use in plant breeding programs. Plants 11(3):414;. https://doi.org/10.3390/plants11030414

    Article  PubMed  PubMed Central  Google Scholar 

  • Purchase JL (1997) Parametric analysis to describe genotype x environment interaction and yield stability in winter wheat. Ph.D. thesis. University of the Orange Free State

  • R Development Core Team (2021) A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna. https://www.R-project.org

  • Tadesse T, Tesfaye B, Abera G (2020) Coffee production constraints and opportunities at major growing districts of southern Ethiopia Coffee production constraints and opportunities at major growing districts of southern Ethiopia. Cogent Food Agric 6(1):1–36. https://doi.org/10.1080/23311932.2020.1741982

    Article  CAS  Google Scholar 

  • Tefera A (2022) Coffee annual report number: global agricultural network. ET2022-0018: 1-7

  • WEF (World Economic Forum) (2021) Which country produced the most coffee in 2020? Retrieved on 20 Mar 2023 and available at https://www.weforum.org/agenda/2021/10/which-country-produced-the-most-coffee-in-2020/

  • Yan Y (2003) Automatic qualitative model abstraction from numerica simulation model. In: Proceedings of the Fourteenth International Workshop on Principles of Diagnosis DX'03, 199–206, Washington DC (USA)

  • Yan W, Kang MS (2003) GGE biplot analysis: a graphical tool for breeders, geneticists, and agronomists. CRC Press, Boca Raton, p 271

    Google Scholar 

  • Yan W, Rajcan I (2002) Biplot analysis of test sites and trait relations of soybean in Ontario. Crop Sci Jan 42(1):11–20. https://doi.org/10.2135/cropsci2002.1100

    Article  Google Scholar 

  • Yan W, Hunt LA, Sheng Q et al (2000a) Cultivar evaluation and mega-environment investigation based on the GGE biplot. J Crop Sci 40(3):597–605

    Article  ADS  Google Scholar 

  • Yan W, Hunt LA, Sheng Q, Szlavnics Z (2000b) Cultivar evaluation and mega-environment investigation based on the GGE biplot. J Crop Sci 40(3):597–605

    Article  Google Scholar 

  • Yan W, Tinker NA (2006) Biplot analysis of multi-environment trial data: principles and applications. Can J Plant Sci 86:623–645. https://doi.org/10.4141/P05-169

    Article  Google Scholar 

  • Yener S, Romano A, Cappellin L, Granitto PM, Aprea E, Navarini L, Märk TD, Gasperi F, Biasioli F (2015) Tracing coffee origin by direct injection headspace analysis with PTR/SRI-MS. Food Res Int 69:235–243. https://doi.org/10.1016/j.foodres.2014.12.046

    Article  CAS  Google Scholar 

  • Yilma YT (2017) A guide to coffee production in Ethiopia. Addis Ababa Ethiopia. pp 1–280

Download references

Acknowledgements

This study was funded by the Ethiopian Institute of Agricultural Research and partly by an institutional collaboration program between Hawassa University (Ethiopia) and the Norwegian University of Life Science.

Author information

Authors and Affiliations

Authors

Contributions

The field experiment establishment, data collection, analysis, interpretation, and writing the original draft were made by the corresponding author; while the co-authors contribute in conceptualization, review, and editing the paper.

Corresponding author

Correspondence to Habtamu Gebreselassie.

Ethics declarations

Conflict of interest

The authors declare no conflict of interest.

Ethical approval

The collection of plant material was carried out in accordance with the guidelines provided by the authors’ institution (Ethiopian Institute of Agriculture, Wondogenet Center).

Additional information

Publisher's Note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Rights and permissions

Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Gebreselassie, H., Tesfaye, B., Gedebo, A. et al. Genotype by environment interaction and stability analysis using AMMI and GGE-biplot models for yield of Arabica coffee genotypes in south Ethiopia. J. Crop Sci. Biotechnol. 27, 65–77 (2024). https://doi.org/10.1007/s12892-023-00213-4

Download citation

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s12892-023-00213-4

Keywords

Navigation