Abstract
The two-component system (TCS) generally consists of three elements, namely the histidine kinase (HK), response regulator (RR), and histidine phosphotransfer (HP) gene families. This study aimed to assess the expression of TCS genes in P. vulgaris leaf tissue under salt and drought stress and perform a genome-wide analysis of TCS gene family members using bioinformatics methods. This study identified 67 PvTCS genes, including 10 PvHP, 38 PvRR, and 19 PvHK, in the bean genome. PvHK2 had the maximum number of amino acids with 1261, whilst PvHP8 had the lowest number with 87. In addition, their theoretical isoelectric points were between 4.56 (PvHP8) and 9.15 (PvPRR10). The majority of PvTCS genes are unstable. Phylogenetic analysis of TCS genes in A. thaliana, G. max, and bean found that PvTCS genes had close phylogenetic relationships with the genes of other plants. Segmental and tandem duplicate gene pairs were detected among the TCS genes and TCS genes have been subjected to purifying selection pressure in the evolutionary process. Furthermore, the TCS gene family, which has an important role in abiotic stress and hormonal responses in plants, was characterized for the first time in beans, and its expression of TCS genes in bean leaves under salt and drought stress was established using RNAseq and qRT-PCR analyses. The findings of this study will aid future functional and genomic studies by providing essential information about the members of the TCS gene family in beans.
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Abbreviations
- CHASE:
-
Cyclases/histidine kinases associated sensing extracellular
- HATPase:
-
Histidine kinase-like ATPase
- HisKA:
-
His kinase A
- HK:
-
Histidine kinase
- HP:
-
Histidine phosphotransfer
- RR:
-
Response regulator
- TCS:
-
Two-component system
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The authors gratefully acknowledge financial support from Atatürk University.
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This research was funded by Atatürk University Scientific Research Project Coordination Unit with project no: FCD-2021-9813.
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Conceptualization, A.G.K, E.I., M.A., and E.Y.; methodology, A.G.K, E.I., M.A., B.I., I.B., and E.Y.; validation, M.S.T., G.A., and A.C.; formal analysis, A.G.K, E.I., M.A., B.I., I.B., and E.Y.; investigation, A.G.K, E.I., M.A., and E.Y.; writing-original draft preparation, A.G.K, E.I., M.A., and E.Y.; writing-review and editing, A.G.K, E.I., M.A., B.I., I.B., M.S.T., G.A., A.C., and E.Y.; visualization, A.G.K, E.I., M.A., B.I., I.B., and E.Y.; supervision, A.G.K, E.I., and M.A.; project administration, A.G.K, E.I., M.A., and E.Y. The published version of the manuscript has been reviewed and approved by all authors.
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Kasapoglu, A.G., Ilhan, E., Aydin, M. et al. Characterization of Two-Component System gene (TCS) in melatonin-treated common bean under salt and drought stress. Physiol Mol Biol Plants 29, 1733–1754 (2023). https://doi.org/10.1007/s12298-023-01406-5
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DOI: https://doi.org/10.1007/s12298-023-01406-5