Log in

Spirosoma montaniterrae sp. nov., an ultraviolet and gamma radiation-resistant bacterium isolated from mountain soil

  • Microbial Systematics and Evolutionary Microbiology
  • Published:
Journal of Microbiology Aims and scope Submit manuscript

Abstract

A Gram-negative, yellow-pigmented, long-rod shaped bacterial strain designated DY10T was isolated from a soil sample collected at Mt. Deogyusan, Jeonbuk province, South Korea. Optimum growth observed at 30°C and pH 7. No growth was observed above 1% (w/v) NaCl. Comparative 16S rRNA gene sequence analysis showed that strain DY10T belonged to the genus Spirosoma and was distantly related to Spirosoma arcticum R2–35T (91.0%), Spirosoma lingual DSM 74T (90.8%), Spirosoma endophyticum EX36T (90.7%), Spirosoma panaciterrae DSM 21099T (90.5%), Spirosoma rigui WPCB118T (90.2%), Spirosoma spitsbergense DSM 19989T (89.8%), Spirosoma luteum DSM 19990T (89.6%), Spirosoma oryzae RHs22T (89.6%), and Spirosoma radiotolerans DG5AT (89.1%). Strain DY10T showed resistance to gamma and ultraviolet radiation. The chemotaxonomic characteristics of strain DY10T were consistent with those of the genus Spirosoma, with the quinone system with MK-7 as the predominant menaquinone, iso-C15:0, C16:1 ω5c, and summed feature3 (C16:1 ω7c/C16:1 ω6c), and phosphatidylethanolamine as the major polar lipid. The G+C content of the genomic DNA was 53.0 mol%. Differential phenotypic properties with the closely related type strains clearly distinguished strain DY10T from previously described members of the genus Spirosoma and represents a novel species in this genus, for which the name Spirosoma montaniterrae sp. nov. is proposed. The type strain is DY10T (=KCTC 23999T =KEMB 9004–162T =JCM 18492T).

This is a preview of subscription content, log in via an institution to check access.

Access this article

Subscribe and save

Springer+ Basic
EUR 32.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or Ebook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Price includes VAT (Spain)

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Ahn J.H., Weon H.Y., Kim S.J., Hong S.B., Seok S.J., and Kwon S.W. 2014. Spirosoma oryzae sp. nov., isolated from rice soil and emended description of the genus Spirosoma. Int. J. Syst. Evol. Microbiol. 64, 3230–3234.

    Article  CAS  PubMed  Google Scholar 

  • Baik K.S., Kim M.S., Park S.C., Lee D.W., Lee S.D., Ka J.O., Choi S.K., and Seong C.N. 2007. Spirosoma rigui sp. nov., isolated from fresh water. Int. J. Syst. Evol. Microbiol. 57, 2870–2873.

    Article  CAS  PubMed  Google Scholar 

  • Bernardet J.F., Nakagawa Y., and Holmes B. 2002. Proposed minimal standards for describing new taxa of the family Flavo-bacteriaceae and emended description of the family. Int. J. Syst. Evol. Microbiol. 64, 2233–2237.

    Google Scholar 

  • Chang X., Jiang F., Wang T., Kan W., Qu Z., Ren L., Fang C., and Peng F. 2014. Spirosoma arcticum sp. nov., isolated from high Arctic glacial till. Int. J. Syst. Evol. Microbiol. 64, 2233–2237.

    Article  CAS  PubMed  Google Scholar 

  • Collins M.D. and Jones D. 1981. Distribution of isoprenoid quinone structural types in bacteria and their taxonomic implications. Microbiol. Rev. 45, 316–354.

    CAS  PubMed Central  PubMed  Google Scholar 

  • Daly M.J. 2009. A new perspective on radiation resistance based on Deinococcus radiodurans. Nat. Rev. Microbiol. 7, 237–245.

    Article  CAS  PubMed  Google Scholar 

  • Doetsch R.N. 1981. Determinative methods of light microscopy. Manual of Methods for General Bacteriology, pp. 21–33. In Gerhardt P., Murray R.G.E., Costilow R.N., Nester E.W., Wood W.A., Krieg N.R., and Phillips G.H. (eds.), American Society for Microbiology. Washington D.C., USA.

  • Felsenstein J. 1985. Confidence limit on phylogenies: an approach using the bootstrap. Evolution 39, 783–791.

    Article  Google Scholar 

  • Finster K.W., Herbert R.A., and Lomstein B.A. 2009. Spirosoma spitsbergense sp. nov. and Spirosoma luteum sp. nov., isolated from a high Arctic permafrost soil, and emended description of the genus Spirosoma. Int. J. Syst. Evol. Microbiol. 59, 839–844.

    Article  CAS  PubMed  Google Scholar 

  • Fitch W.M. 1971. Toward defining the course of evolution: minimum change for a specified tree topology. Syst. Zool. 20, 406–416.

    Article  Google Scholar 

  • Fries J., Pfeiffer S., Kuffner M., and Sessitsch A. 2013. Spirosoma endophyticum sp. nov., isolated from Zn- and Cd-accumulating Salix caprea. Int. J. Syst. Evol. Microbiol. 63, 4586–4590.

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Gosink J.J., Woese C.R., and Staley J.T. 1998. Polaribactger gen. nov., with three new species, P. irgensii sp. nov., P. franzmannii sp. nov. and P. filamentus sp. nov., gas vacuolate polare marine bacteria of the Cytophaga-Flavobacterium-Bactgerodes group and reclassification of ‘Flectobacillus glomeraatus’ as Polaribacer glomeratus comb. nov. Int. J. Syst. Bacteriol. 48, 223–235.

    Article  PubMed  Google Scholar 

  • Hall T.A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41, 95–98.

    CAS  Google Scholar 

  • Ignacio R.M., Yoon Y.S., Sajo M.E.J., Kim C.S., Kim D.H., Kim S.K., and Lee K.J. 2013. The balneotherapy effect of hydrogen reduced water on UVB-mediated skin injury in hairless mice. Mol. Cell. Toxicol. 9, 15–21.

    Article  CAS  Google Scholar 

  • Im W.T., Jung H.M., Ten L.N., Kim M.K., Bora N., Goodfellow M., Lim S., Jung J., and Lee S.T. 2008. Deinococcus aquaticus sp. nov., isolated from fresh water, and Deinococcus caeni sp. nov., isolated from activated sludge. Int. J. Syst. Evol. Microbiol. 58, 2348–2353.

    Article  CAS  PubMed  Google Scholar 

  • Im S., Song D., Joe M., Kim D., Park D.H., and Lim S. 2013. Comparative survival analysis of 12 histidine kinase mutants of Deinococcus radiodurans after exposure to DNA-damaging agents. Bioprocess Biosyst. Eng. 36, 781–789.

    Article  CAS  PubMed  Google Scholar 

  • Kampfer P., Lodders N., Huber B., Falsen E., and Busse H.J. 2008. Deinococcus aquatilis sp. nov., isolated from water. Int. J. Syst. Evol. Microbiol. 58, 2803–2806.

    Article  PubMed  Google Scholar 

  • Kang M.S., Yu S.L., Kim H.Y., Lim H.S., and Lee S.K. 2013. SPT4 increases UV-induced mutagenesis in yeast through impaired nucleotide excision repair. Mol. Cell. Toxicol. 9, 37–43.

    Article  CAS  Google Scholar 

  • Kim O.S., Cho Y.J., Lee K., Yoon S.H., Kim M., Na H., Park S.C., Jeon Y.S., Lee J.H., Yi H., et al. 2012. Introducing Ez-Taxon-e: A prokaryotic 16S RNA gene sequence database with phylotypes that represent uncultured species. Int. J. Syst. Evol. Microbiol. 62, 716–721.

    Article  CAS  PubMed  Google Scholar 

  • Kimura M. 1983. The neutral theory of molecular evolution. Cambridge: Cambridge University Press.

    Book  Google Scholar 

  • Komagata K. and Suzuki K. 1987. Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol. 19, 161–207.

    Article  CAS  Google Scholar 

  • Larkin J.M. and Borrall R. 1984. Family 1. Spirosomaceae Larkin and Borrall 1978 595AL. In Bergey’s Manual of Systematic Bacteriology Vol. 1, pp. 125–132.

    Google Scholar 

  • Lee J.J., Srinivasan S., Lim S., Joe M., Im S., Bae S.I., Park K.R., Han J.H., Park S.H., Joo B.M., et al. 2014. Spirosoma radiotolerans sp. nov., a gamma-radiation-resistant bacterium isolated from gamma ray-irradiated soil. Curr. Microbiol. 69, 286–291.

    Article  CAS  PubMed  Google Scholar 

  • Lim S., Song D., Joe M., and Kim D. 2012. Development of a qualitative dose indicator for gamma radiation using lyophilized Deinococcus. J. Microbiol. Biotechnol. 22, 1296–1300.

    Article  CAS  PubMed  Google Scholar 

  • Mesbah M., Premachandran U., and Whitman W.B. 1989. Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int. J. Syst. Bacteriol. 39, 159–167.

    Article  CAS  Google Scholar 

  • Minnikin D.E., O’Donnell A.G., Goodfellow M., Alderson G., Athalye M., Schaal A., and Parlett J.H. 1984. An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J. Microbiol. Methods 2, 233–241.

    Article  CAS  Google Scholar 

  • Rainey F.A., Ray K., Ferreira M., Gatz B.Z., Nobre M.F., Bagaley D., Rash B.A., Park M.J., Earl A.M., Shank N.C., et al. 2005. Extensive diversity of ionizing-radiation-resistant bacteria recovered from sonoran desert soil and description of nine new species of the genus Deinococcus obtained from a single soil sample. Appl. Environ. Microbiol. 71, 5225–5235.

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Saitou N. and Nei M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4, 406–425.

    CAS  PubMed  Google Scholar 

  • Sasser M. 1990. Identification of bacteria by gas chromatography of cellular fatty acids. MIDI Technical Note 101. MIDI Inc., Newark D.E., USA.

    Google Scholar 

  • Selvam K., Duncan J.R., Tanaka M., and Battista J.R. 2013. DdrA, DdrD, and PprA: Components of UV and mitomycin C resistance in Deinococcus radiodurans R1. PLoS One 8, e69007.

  • Shin Y.K., Lee J.S., Chun C.O., Kim H.J., and Park Y.H. 1996. Isoprenoid quinone profiles of the Leclercia adecarboxylata KCTC 1036T. J. Microbiol. Biotechnol. 6, 68–69.

    CAS  Google Scholar 

  • Srinivasan S., Kim M.K., Lim S., Joe M., and Lee M. 2012a. Deinococcus daejeonensis sp. nov., isolated from sludge in a sewage disposal plant. Int. J. Syst. Evol. Microbiol. 62, 1265–1270.

    Article  CAS  PubMed  Google Scholar 

  • Srinivasan S., Lee J.J., Lim S., Joe M., and Kim M.K. 2012b. Deinococcus humi sp. nov., isolated from soil. Int. J. Syst. Evol. Microbiol. 62, 2844–2850.

    Article  CAS  PubMed  Google Scholar 

  • Srinivasan S., Lee J.J., Lim S.Y., Joe M.H., Im S.H., and Kim M.K. 2014. Deinococcus radioresistens sp. nov., a UV and gamma radiation- resistant bacterium isolated from mountain soil. Antonie van Leeuwenhoek 107, 539–545.

    Article  PubMed  Google Scholar 

  • Tamaoka J. and Komagata K. 1984. Determination of DNA base composition by reversed phase high-performance liquid chromatography. FEMS Microbiol. Lett. 25, 125–128.

    Article  CAS  Google Scholar 

  • Tamura K., Peterson D., Peterson N., Stecher G., Nei M., and Kumar S. 2011. Mega5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28, 2731–2739.

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Ten, L.N., Xu, J.L., **, F.X., Im, W.T., Oh, H.M., and Lee, S.T. 2009. Spirosoma panaciterrae sp. nov., isolated from soil. Int. J. Syst. Evol. Microbiol. 59, 331–335.

    Article  CAS  PubMed  Google Scholar 

  • Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F., and Higgins, D.G. 1997. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 24, 4876–4882.

    Article  Google Scholar 

  • Weeks, O.B. 1981. Preliminary studies of the pigments of Flavobacterium breve NCTC 11099 and Flavobacterium odoratum NCTC 11036. In Reichenbach, H. and Weeks, O.B. (eds.) The Flavobacterium-Cytophaga group, Gesellschaft für Biotechnologische For-schung GmbH, pp. 108–114.

    Google Scholar 

  • Weisburg, W.G., Barns, S.M., Pelletier, D.A., and Lane, D.J. 1991. 16S ribosomal DNA amplification for phylogenetic study. J. Bacteriol. 173, 697–703.

    CAS  PubMed Central  PubMed  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Sathiyaraj Srinivasan.

Additional information

The NCBI GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain DY10T (=KCTC 23999T =KEMB 9004–162T =JCM 18492T) is JQ958375.

Supplemental material for this article may be found at http://www.springerlink.com/content/120956.

Electronic supplementary material

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Lee, JJ., Kang, MS., Joo, E.S. et al. Spirosoma montaniterrae sp. nov., an ultraviolet and gamma radiation-resistant bacterium isolated from mountain soil. J Microbiol. 53, 429–434 (2015). https://doi.org/10.1007/s12275-015-5008-5

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s12275-015-5008-5

Keywords

Navigation