Abstract
The resonant low-energy electron (LEE) induced scattering off biomolecules is proposed to undergo dissociative electron attachment (DEA) as one of the favoured pathways. In the current work, we have considered the citric acid molecule due to its biological relevance in the Krebs cycle, in which LEEs may affect and lead to metabolic dysfunction. To investigate the DEA pathway of citric acid, we implemented the local complex potential-based time-dependent wavepacket (LCP-TDWP) approach. From our calculation, we observed that the vertical attachment energy (VAE) of the citric acid system is found to be −1.17 eV, and the electron attaches itself to the 2-carboxylic acid group to form a transient negative ion (TNI) which further dissociates into a free radical and a radical anion. The lifetime for the TNI is around 1000 fs, with a maximum cross-section seen at 1.09 eV.
Graphical abstract
The interaction of low-energy electrons with citric acid can lead to dissociative electron attachment (DEA). In the current work, we used the local complex potential-based time-dependent wave packet (LCP-TDWP) approach to investigate DEA to citric acid. The time evolution of the probability density suggests the possibility of a boomerang model.
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References
Lindsay A, Chamberlain C M, Witthuhn B A, Lowe D A and Ervasti J M 2019 Dystrophinopathy-associated dysfunction of Krebs cycle metabolism Hum. Mol. Genet. 28 942
Wiskich J T 1980 Control of the Krebs cycle In Metabolism and Respiration (Academic Press) p. 243
von Sonntag C 1987 The chemical basis of radiation biology (Taylor & Francis: London) p. 22
Smith K 2013 Aging, carcinogenesis, and radiation biology: The role of nucleic acid addition reactions (Springer Science & Business Media)
Fuciarelli AF and Zimbrick JD 1995 Radiation Damage in DNA: Structure/Function Relationships at Early Times (Battelle Press: Columbus, OH (United States))
Hagen U, Harder D, Jung H and Streffer C 1995 Radiation Research 1895-1995 Congress Proceedings (Congress Lectures, 10th ICRR)
LaVerne J A and Pimblott S M 1995 Electron energy-loss distributions in solid, dry DNA Radiat. Res. 141 208
Michael B D and O’Neill P 2000 A sting in the tail of electron tracks Science 287 1603
Swiderek P 2006 Fundamental processes in radiation damage of DNA Angew. Chem. Int. Ed. 45 4056
Pimblott S M and LaVerne J A 2007 Production of low-energy electrons by ionizing radiation Radiat. Phys. Chem. 76 1244
Kopyra J, Wierzbicka P, Tulwin A, Thiam G, Bald I, Rabilloud F and Abdoul-Carime H 2021 Experimental and Theoretical Studies of Dissociative Electron Attachment to Metabolites Oxaloacetic and Citric Acids Int. J. Mol. Sci. 22 7676
Pshenichnyuk A, Modelli A and Komolov S 2018 Interconnections between dissociative electron attachment and electron-driven biological processes Int. Rev. Phys. Chem. 37 125
Alizadeh E, Orlando T M and Sanche L 2015 Biomolecular Damage Induced by Ionizing Radiation: The Direct and Indirect Effects of Low-Energy Electrons on DNA Annu. Rev. Phys. Chem. 66 379
Sanche L 2016 Interaction of low energy electrons with DNA: Applications to cancer radiation therapy Radiat. Phys. Chem. 128 36
Becker D, Kumar A, Adhikary A and Sevilla M D 2020 g- and Ion-beam DNA Radiation Damage: Theory and Experiment. DNA Damage, DNA Repair and Disease (Royal Soc. Chem. (RSC): London, UK) p. 426
Gao Y, Zheng Y and Sanche L 2021 Low-energy electron damage to condensed-phase DNA and its constituents Int. J. Mol. Sci. 22 7879
Kumari B, Huwaidi A, Robert G, Cloutier P, Bass AD, Sanche L and Wagner J R 2022 Shape Resonances in DNA: Nucleobase Release, Reduction, and Dideoxynucleoside Products Induced by 1.3 to 2.3 eV Electrons J. Phys. Chem. B 126 517
Alizadeh E, Sanz A G, Garcia G and Sanche L 2013 Radiation damage to DNA: The indirect effect of low-energy electrons J. Phys. Chem. Lett. 4 825
Boudaïffa B, Cloutier P, Hunting D, Huels M A and Sanche L 2000 Resonant Formation of DNA Strand Breaks by Low-Energy (3 to 20 eV) Electrons Science 287 1658
Huels M A, Boudaïffa B, Cloutier P, Hunting D and Sanche L 2003 Single, Double, and Multiple Double Strand Breaks Induced in DNA by 3–100 eV Electrons J. Am. Chem. Soc. 125 4467
Barrios R, Skurski P and Simons J 2002 Mechanism for Damage to DNA by Low-Energy Electrons J. Phys. Chem. B 106 7991
Narayanan S J J, Tripathi D and Dutta A K 2021 Doorway Mechanism for Electron Attachment Induced DNA Strand Breaks J. Phys. Chem. Lett. 12 10380
Mukherjee M, Tripathi D, Brehm M, Riplinger C and Dutta A K 2020 Efficient EOM-CC-based protocol for the calculation of electron affinity of solvated nucleobases: Uracil as a case study J. Chem. Theor. Comput. 17 116
Ranga S, Mukherjee M and Dutta A K 2020 Interactions of solvated electrons with nucleobases: The effect of base pairing ChemPhysChem 21 1027
Ma J, Bahry T, Denisov S A, Adhikary A and Mostafavi M 2021 Quasi-Free Electron-Mediated Radiation Sensitization by C5-Halopyrimidines J. Phys. Chem. A 125 7967
Gu B, Smyth M and Kohanoff J 2014 Protection of DNA against low-energy electrons by amino acids: a first-principles molecular dynamics study Phys. Chem. Chem. Phys. 16 24350
Ptasińska S, Li Z, Mason N J and Sanche L 2010 Damage to amino acid–nucleotide pairs induced by 1 eV electrons Phys. Chem. Chem. Phys. 12 9367
Dąbkowska I, Rak J, Gutowski M, Nilles J M, Stokes S T and Bowen K H Jr. 2004 Barrier-free intermolecular proton transfer induced by excess electron attachment to the complex of alanine with uracil J. Chem. Phys. 120 6064
Pelc A, Sailer W, Scheier P, Mason N J and Märk T D 2002 Low energy electron attachment to formic acid Eur. Phys. J. D. 20 441
Sailer W, Pelc A, Probst M, Limtrakul J, Scheier P, Illenberger E and Märk T D 2003 Dissociative electron attachment to acetic acid (CH3COOH) Chem. Phys. Lett. 378 250
Zawadzki M, Ranković M, Kočišek J and Fedor J 2018 Dissociative electron attachment and anion-induced dimerization in pyruvic acid Phys. Chem. Chem. Phys. 20 6838
Zawadzki M, Wierzbicka P and Kopyra J 2020 Dissociative electron attachment to benzoic acid (C7H6O2) J. Chem. Phys. 152 174304
Arumainayagam C R, Lee H L, Nelson R B, Haines D R and Gunawardane R P 2010 Low-energy electron-induced reactions in condensed matter Surf. Sci. Rep. 65 1
Liu C, Zheng Y and Sanche L 2022 Damage induced to DNA and its constituents by 0–3 eV UV photoelectrons Photochem. Photobiol. 98 563
Khorsandgolchin G, Sanche L, Cloutier P and Wagner J R 2019 Strand breaks induced by very low energy electrons: Product analysis and mechanistic insight into the reaction with TpT J. Am. Chem. Soc. 141 10315
Singh R K, Sarma M and Mishra M K 2007 Approximate construction of local complex potentials for a time dependent wave packet based treatment of vibrational excitation cross-sections in resonant e-N2, e-CO and e-H2 scattering Indian J. Phys. 81 983
Sarma M, Adhikari S and Mishra M K 2007 Simple Systematization of Vibrational Excitation cross-section calculations for resonant electron-molecule scattering in the boomerang and impulse models J. Chem. Phys. 126 044309
Bhaskaran R, Bhowmick S, Mishra M K and Sarma M 2011 Low-Energy Electron-Induced Single Strand Breaks in 2′-Deoxycytidine-3′-Monophosphate Using the Local Complex Potential Based Time-Dependent Wave Packet Approach J. Phys. Chem. A 115 13753
Bhaskaran R and Sarma M 2013 Effect of Quantum Tunneling on Single Strand Breaks in a Modeled Gas Phase Cytidine Nucleotide Induced by Low Energy Electron: A Theoretical Approach J. Chem. Phys. 139 045103
Bhaskaran R and Sarma M 2014 Low Energy Electron Induced Cytosine Base Release on 2’Deoxycytidine 3′-Monophosphate via Glycosidic Bond Cleavage: A Time-Dependent Wavepacket Study J. Chem. Phys. 141 104309
Bhaskaran R and Sarma M 2015 The Role of the Shape Resonance State in Low Energy Electron Induced Single Strand Break in 2’-deoxycytidine-5’-monophosphate Phys. Chem. Chem. Phys. 17 15250
Bhaskaran R and Sarma M 2015 Low-Energy Electron Interaction with the Phosphate Group in DNA Molecule and the Characteristics of Single-Strand Break Pathways J. Phys. Chem. A 119 10130
Bhowmick S, Mishra M K and Sarma M 2012 Investigation of dissociative electron attachment to 2′-deoxycytidine-3′-monophosphate using DFT method and time dependent wave packet approach J. Chem. Phys. 137 064310
Roothaan C C J 1951 New Developments in Molecular Orbital Theory Rev. Mod. Phys. 23 69
Frisch M J, Head-Gordon M and Pople J A 1990 Direct MP2 gradient method Chem. Phys. Lett. 166 275
Frisch M J, Head-Gordon M and Pople J A 1990 Semi-direct algorithms for the MP2 energy and gradient Chem. Phys. Lett. 166 281
Head-Gordon M, Pople J A and Frisch M J 1988 MP2 energy evaluation by direct methods Chem. Phys. Lett. 153 503
Saebø S and Almlöf J 1989 Avoiding the integral storage bottleneck in LCAO calculations of electron correlation Chem. Phys. Lett. 154 83
Head-Gordon M and Head-Gordon T 1994 Analytic MP2 Frequencies Without Fifth Order Storage: Theory and Application to Bifurcated Hydrogen Bonds in the Water Hexamer Chem. Phys. Lett. 220 122
Weigend F and Ahlrichs R 2005 Balanced basis sets of split valence, triple zeta valence and quadruple zeta valence quality for H to Rn: Design and assessment of accuracy Phys. Chem. Chem. Phys. 7 3297
Weigend F 2006 Accurate Coulomb-fitting basis sets for H to Rn Phys. Chem. Chem. Phys. 8 1057
Weigend F 2008 Hartree- Fock fitting basis sets for H to Rn J. Comput. Chem. 29 167
Liakos D G, Kesharwani Sparta M, Martin M K and J M and Neese F 2015 Exploring the accuracy limits of local pair natural orbital coupled-cluster theory J. Chem. Theor. Comput. 11 1525
Guo Y, Sivalingam K, Valeev E F and Neese F 2016 Sparse Maps—A Systematic Infrastructure for Reduce d-Scaling Electronic Structure Methods. III. Linear-Scaling Multireference Domain-Based Pair Natural Orbital N-Electron Valence Perturbation Theory J. Chem. Phys. 144 094111
Dutta A K, Neese F and Izsák R 2016 Towards a Pair Natural Orbital Coupled Cluster Method for Excited States J. Chem. Phys. 145 034102
Reed A E, Curtiss L A and Weinhold F 1988 Intermolecular interactions from a natural bond orbital, donor-acceptor viewpoint Chem. Rev. 88 899
Frisch M J, Trucks G W, Schlegel H B, Scuseria G E, Robb M A, Cheeseman J R et al. 2016 Gaussian 16, Revision C.01 (Wallingford, CT: Gaussian Inc)
Neese F 2022 Software update: The ORCA program system—Version 5.0. Wiley Interdisciplinary Reviews: Comput. Mol. Sci. 12 1606
Marston C C and Balint-Kurti G G 1989 The Fourier grid Hamiltonian method for bound state eigenvalues and eigenfunctions J. Chem. Phys. 91 3571
Zhang J, Imre D G and Frederick J H 1989 HOD spectroscopy and photodissociation dynamics: selectivity in hydroxyl/hydroxyl-d bond breaking J. Phys. Chem. 93 1840
Leforestier C, Bisseling R H, Cerjan C, Feit M D, Friesner R, Guldberg A, et al. 1991 comparison of different propagation schemes for the time dependent Schrödinger equation J. Comput. Phys. 94 59
Aflatooni K, Gallup G A and Burrow P D 1998 Electron attachment energies of the DNA bases J. Phys. Chem. A 102 6205
Rienstra-Kiracofe J C, Tschumper G S, Schaefer H F, Nandi S and Ellison G B 2002 Atomic and molecular electron affinities: photoelectron experiments and theoretical computations Chem. Rev. 102 231
Lee T J and Taylor P R 1989 A diagnostic for determining the quality of single-reference electron correlation methods Int. J. Quantum. Chem. 36 199
Rana A and Sarma M 2019 Computational Investigation of Dissociative Electron Attachment to Ammonia J. Indian Chem. Soc. 96 785
Sanche L and Schulz G J 1973 Electron transmission spectroscopy: Resonances in triatomic molecules and hydrocarbons J. Chem. Phys. 58 479
Acknowledgments
The authors thank the Supercomputing facility ‘PARAM-Ishan’ and National Supercomputing Mission (NSM) for providing computing resources of ‘PARAM Kamrupa’ at IIT Guwahati, which is implemented by C-DAC and supported by the Ministry of Electronics and Information Technology (MeitY). This work has been partially supported by a grant from the Department of Science and Technology (DST) [Grant No. SB/S1/PC-90/2012], India, to M.S. S. K. acknowledges PMRF and the Ministry of Human resource development, Government of India, H.K.S acknowledges the Ministry of Human resource development, Government of India. H.P.B. is thankful for the support from the Department of Science and Technology (DST), Government of India for the fellowship vide the registration number IF170899/2017. The authors also thank the Department of Chemistry, IIT Guwahati, for infrastructure facilities.
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Dedicated to Prof. S.P. Bhattacharyya on the occasion of his 75th birthday.
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Kumar, S., Singh, H.K., Bhattacharyya, H.P. et al. Low energy electron interaction with citric acid: a local complex potential based time-dependent wavepacket study. J Chem Sci 135, 88 (2023). https://doi.org/10.1007/s12039-023-02200-2
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DOI: https://doi.org/10.1007/s12039-023-02200-2