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Proteomics and 1H NMR-based metabolomics analysis of pathogenic Vibrio vulnificus aquacultures isolated from sewage drains

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Abstract

Vibrio bacteria live in both marine and freshwater habitats and are associated with aquatic animals. Vibrio vulnificus is a pathogenic bacterium that infects people and livestock. It is usually found in offshore waters or within fish and shellfish. This study presents a comparative proteomic analysis of the outer membrane protein (OMP) changes in V. vulnificus proteins after stimulation with sewage from sewage drains. Using two-dimensional electrophoresis followed by MALDI-TOF MS/MS, 32 protein spots with significant differences in abundance were identified and characterized. These identified proteins were found to be involved in various functional categories, including catalysis, transport, membrane proteins progresses, receptor activity, energy metabolism, cytokine activity, and protein metabolism. The mRNA expression levels of 12 differential proteins were further assessed by qRT-PCR. Seven genes including carboxypeptidase, hemoglobin receptor, succinate dehydrogenase iron-sulfur subunit, ATP synthase subunit alpha, thioredoxin, succinyl-CoA synthetase subunit, and alanine dehydrogenase were downregulated upon stimulation, whereas the protein expression levels HupA receptor, type I secretion outer membrane protein, glutamine synthetase, superoxide dismutase, OmpU, and VuuA were upregulated. 1H NMR spectra showed 18 dysregulated metabolites from V. vulnificus after the sewage stimulation and the pathogenicity was enhanced after that.

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References

  • 3Rd GJ, Park Y, Lamers Y, Bandyopadhyay N, Chi YY, Lee K, Kim S, Da SV, Hove N, Ranka S (2013): Metabolomic analysis reveals extended metabolic consequences of marginal vitamin B-6 deficiency in healthy human subjects. PLoS One 8, e63544

  • Akira K, Hichiya H, Shuden M, Morita M, Mitome H (2012) Sample preparation method to minimize chemical shift variability for NMR-based urinary metabonomics of genetically hypertensive rats. Journal of Pharmaceutical & Biomedical Analysis 66:339–344

    Article  CAS  Google Scholar 

  • Alam M, Sultana M, Nair GB, Sack RB, Sack DA, Siddique AK, Ali A, Huq A, Colwell RR (2006) Toxigenic Vibrio cholerae in the aquatic environment of Mathbaria, Bangladesh. Applied & Environmental Microbiology 72:2849–2855

    Article  CAS  Google Scholar 

  • Bao Y, Wang Q, Lin Z (2011) Hemoglobin of the bloody clam Tegillarca granosa (Tg-HbI) is involved in the immune response against bacterial infection. Fish & Shellfish Immunology 31:517–523

    Article  CAS  Google Scholar 

  • Bisharat N, Agmon V, Finkelstein R, Raz R, Ben-Dror G, Lerner L, Soboh S, Colodner R, Cameron DN, Wykstra DL (1999) Clinical, epidemiological, and microbiological features of Vibrio vulnificus biogroup 3 causing outbreaks of wound infection and bacteraemia in Israel. Lancet 354:1421–1424

    Article  CAS  Google Scholar 

  • Bollard ME, Holmes E, Lindon JC, Mitchell SC, Branstetter D, Zhang W, Nicholson JK (2001) Investigations into biochemical changes due to diurnal variation and estrus cycle in female rats using high-resolution (1)H NMR spectroscopy of urine and pattern recognition. Anal Biochem 295:194–202

    Article  CAS  Google Scholar 

  • Boroujerdi AF, Vizcaino MI, Meyers A, Pollock EC, Huynh SL, Schock TB, Morris PJ, Bearden DW (2009) NMR-based microbial metabolomics and the temperature-dependent coral pathogen Vibrio coralliilyticus. Environmental Science & Technology 43:7658–7664

    Article  CAS  Google Scholar 

  • Brunhuber NM, Blanchard JS (1994) The biochemistry and enzymology of amino acid dehydrogenases. Crit Rev Biochem Mol Biol 29:415

    Article  CAS  Google Scholar 

  • Chen G, Gharib TG, Huang CC, Taylor JM, Misek DE, Kardia SL, Giordano TJ, Iannettoni MD, Orringer MB, Hanash SM (2002) Discordant protein and mRNA expression in lung adenocarcinomas. Molecular & Cellular Proteomics Mcp 1:304–313

    Article  CAS  Google Scholar 

  • Croxatto A, Chalker VJ, Lauritz J, Jass J, Hardman A, Williams P, Cámara M, Milton DL (2002) VanT, a homologue of Vibrio harveyi LuxR, regulates serine, metalloprotease, pigment, and biofilm production in Vibrio anguillarum. J Bacteriol 184:1617–1629

    Article  CAS  Google Scholar 

  • Davey ML, Hancock RE, Mutharia LM (1998) Influence of culture conditions on expression of the 40-kilodalton porin protein of Vibrio anguillarum serotype O2. Applied & Environmental Microbiology 64:138–146

    CAS  Google Scholar 

  • Davis SR, Quinlivan EP, Stacpoole PW (2006) Plasma glutathione and cystathionine concentrations are elevated but cysteine flux is unchanged by dietary vitamin B-6 restriction in young men and women. J Nutr 136:373–378

    CAS  Google Scholar 

  • Davis W, Ronai ZE, Tew KD (2001) Cellular thiols and reactive oxygen species in drug-induced apoptosis. Journal of Pharmacology & Experimental Therapeutics 296:1–6

    CAS  Google Scholar 

  • Dechet AM, Yu PA, Koram N, Painter J (2008) Nonfoodborne Vibrio infections: an important cause of morbidity and mortality in the United States, 1997-2006. Clin Infect Dis 46:970–976

    Article  Google Scholar 

  • Depaola A, Capers GM, Alexander D (1994) Densities of Vibrio vulnificus in the intestines of fish from the U.S. Gulf Coast. Applied & Environmental Microbiology 60:984–988

    CAS  Google Scholar 

  • Eisenberg D, Gill HS, Pfluegl GM, Rotstein SH (2000) Structure-function relationships of glutamine synthetases. Biochim Biophys Acta 1477:122–145

    Article  CAS  Google Scholar 

  • Ellis TN, Kuehn MJ (2010) Virulence and immunomodulatory roles of bacterial outer membrane vesicles. Microbiology & Molecular Biology Reviews 74:81–94

    Article  CAS  Google Scholar 

  • Emmerling M, Dauner M, Ponti A, Fiaux J, Hochuli M, Szyperski T, Wüthrich K, Bailey JE, Sauer U (2002) Metabolic flux responses to pyruvate kinase knockout in Escherichia coli. J Bacteriol 184:152

    Article  CAS  Google Scholar 

  • Fan J, Shao C, Ho Y, Yu C, Hor L (2001) Isolation and characterization of a Vibrio vulnificus mutant deficient in both extracellular metalloprotease and cytolysin. Infection & Immunity 69:5943–5948

    Article  CAS  Google Scholar 

  • Fernández D, Pallarès I, Vendrell J, Avilés FX (2010) Progress in metallocarboxypeptidases and their small molecular weight inhibitors. Biochimie 92:1484–1500

    Article  Google Scholar 

  • Fouz B, Amaro C (2003) Isolation of a new serovar of Vibrio vulnificus pathogenic for eels cultured in freshwater farms. Aquaculture 217:677–682

    Article  Google Scholar 

  • Fullner KJ, Mekalanos JJ (2000) In vivo covalent cross-linking of cellular actin by the Vibrio cholerae RTX toxin. EMBO J 19:5315–5323

    Article  CAS  Google Scholar 

  • Futcher B, Latter GI, Monardo P, Mclaughlin CS, Garrels JI (1999) A sampling of the yeast proteome. Molecular & Cellular Biology 19:7357

    Article  CAS  Google Scholar 

  • Girbal L, Hilaire D, Leduc S, Delery L, Rols JL, Lindley ND (2000) Reductive cleavage of demeton-S-methyl by Corynebacterium glutamicum in cometabolism on more readily metabolizable substrates. Applied & Environmental Microbiology 66:1202–1204

    Article  CAS  Google Scholar 

  • Griffiths E (1991) Environmental regulation of bacterial virulence- implications for vaccine design and production. Trends Biotechnol 9:309

    Article  CAS  Google Scholar 

  • Haroune N, Combourieu B, Besse P, Sancelme M, Kloepfer A, Reemtsma T, De WH, Delort AM (2004) Metabolism of 2-mercaptobenzothiazole by Rhodococcus rhodochrous. Applied & Environmental Microbiology 70:6315–6319

    Article  CAS  Google Scholar 

  • Horseman MA, Surani S (2010) A comprehensive review of Vibrio vulnificus: an important cause of severe sepsis and skin and soft-tissue infection. International Journal of Infectious Diseases Ijid Official Publication of the International Society for Infectious Diseases 15:e157–e166

    Article  Google Scholar 

  • Jiang N, Chun-Li LI, Zhou J, Wang ZH, Tai-Wu LI, **u-Rong SU (2013) Diversity and distribution of dominant bacteria nearby Ningbo land-based drainage discharge outlets. Journal of Ningbo University

  • Jones MK, Oliver JD (2009) Vibrio vulnificus: disease and pathogenesis. Infection & Immunity 77:1723

    Article  CAS  Google Scholar 

  • Kim BS, Kim JS (2002) Vibrio vulnificus cytolysin induces hyperadhesiveness of pulmonary endothelial cells for neutrophils through endothelial P-selectin: a mechanism for pulmonary damage by Vibrio vulnificus cytolysin. Exp Mol Med 34:308–312

    Article  CAS  Google Scholar 

  • Kim YR, Lee SE, Kook H, Yeom JA, Na HS, Kim SY, Sun SC, Choy HE, Rhee JH (2008) Vibrio vulnificus RTX toxin kills host cells only after contact of the bacteria with host cells. Cell Microbiol 10:848–862

    Article  CAS  Google Scholar 

  • Kim YR, Kim BU, Kim SYKim CM, Na HS, Koh JT, Choy HE, Rhee JH, Lee SE (2010): Outer membrane vesicles of Vibrio vulnificus deliver cytolysin-hemolysin VvhA into epithelial cells to induce cytotoxicity. Biochemical & Biophysical Research Communications 399, 607–612

  • Lamarre SG, Molloy AM, Reinke SN, Sykes BD, Brosnan ME, Brosnan JT (2012) Formate can differentiate between hyperhomocysteinemia due to impaired remethylation and impaired transsulfuration. American Journal of Physiology Endocrinology & Metabolism 302:E61–E67

    Article  CAS  Google Scholar 

  • Li ZZ, Guo QX, Ren T, Zhu XQ, Liu YC (1993) Can TMS and DSS be used as NMR references for cyclodextrin species in aqueous solution? J Incl Phenom Macrocycl Chem 15:37–42

    Article  CAS  Google Scholar 

  • Litwin CM, Quackenbush J (2001) Characterization of a Vibrio vulnificus LysR homologue, HupR, which regulates expression of the haem uptake outer membrane protein, HupA. Microb Pathog 31:295–307

    Article  CAS  Google Scholar 

  • Long S, Mothibeli MA, Robb FT, Woods DR (1981) Regulation of extracellular alkaline protease activity by histidine in a collagenolytic Vibrio alginolyticus strain. J Gen Microbiol 127:193–199

    CAS  Google Scholar 

  • Lu Y, Zhang P, Li C, Su X, ** C, Li Y, Xu Y, Li T (2013) Characterisation of immune-related gene expression in clam (Venerupis philippinarum) under exposure to di(2-ethylhexyl) phthalate. Fish & Shellfish Immunology 34:142

    Article  CAS  Google Scholar 

  • Mekalanos JJ (1992) Environmental signals controlling expression of virulence determinants in bacteria. J Bacteriol 174:1–7

    Article  CAS  Google Scholar 

  • Miyamoto K, Kosakai K, Ikebayashi S, Tsuchiya T, Yamamoto S, Tsujibo H (2009) Proteomic analysis of Vibrio vulnificus M2799 grown under iron-repleted and iron-depleted conditions. Microb Pathog 46:171–177

    Article  CAS  Google Scholar 

  • Okujo N, Akiyama T, Miyoshi S, Shinoda S, Yamamoto S (1996): Involvement of vulnibactin and exocellular protease in utilization of transferrin- and lactoferrin-bound iron by Vibrio vulnificus 40, 595–598

  • Park KH, Yang HB, Kim HG, Lee YR, Hur H, Kim JS, Koo BS, Han MK, Kim JH, Jeong YJ (2005) Low density lipoprotein inactivates Vibrio vulnificus cytolysin through the oligomerization of toxin monomer. Med Microbiol Immunol 194:137–141

    Article  CAS  Google Scholar 

  • Pei Z, Burucoa C, Grignon B, Baqar S, Huang XZ, Kopecko DJ, Bourgeois AL, Fauchere JL, Blaser MJ (1998) Mutation in the peb1A locus of Campylobacter jejuni reduces interactions with epithelial cells and intestinal colonization of mice. Infection & Immunity 66:938

    CAS  Google Scholar 

  • Porcheron G, Garénaux A, Proulx J, Sabri M, Dozois CM (2012) Iron, copper, zinc, and manganese transport and regulation in pathogenic Enterobacteria: correlations between strains, site of infection and the relative importance of the different metal transport systems for virulence. Frontiers in Cellular & Infection Microbiology 3:90

    Google Scholar 

  • Ramos A, Neves AR, Santos H (2002) Metabolism of lactic acid bacteria studied by nuclear magnetic resonance. Antonie Van Leeuwenhoek 82:249–261

    Article  CAS  Google Scholar 

  • Søorum H, Poppe TT, Olsvik O (1988) Plasmids in Vibrio salmonicida isolated from salmonids with hemorrhagic syndrome (Hitra disease). J Clin Microbiol 26:1679

    Google Scholar 

  • Schild S, Nelson EJ, Camilli A (2008) Immunization with Vibrio cholerae outer membrane vesicles induces protective immunity in mice. Infection & Immunity 76:4554–4563

    Article  CAS  Google Scholar 

  • Schild S, Nelson EJ, Bishop AL, Camilli A (2009) Characterization of Vibrio cholerae outer membrane vesicles as a candidate vaccine for cholera. Infection & Immunity 77:472

    Article  CAS  Google Scholar 

  • Serafini L, Hann JB, Kültz D, Tomanek L (2011) The proteomic response of sea squirts (genus Ciona) to acute heat stress: a global perspective on the thermal stability of proteins. Comparative Biochemistry & Physiology Part D Genomics & Proteomics 6:322–334

    Article  CAS  Google Scholar 

  • Sidell BD, O'Brien KM (2006) When bad things happen to good fish: the loss of hemoglobin and myoglobin expression in Antarctic icefishes. J Exp Biol 209:1791–1802

    Article  CAS  Google Scholar 

  • Strom MS, Paranjpye RN (2000) Epidemiology and pathogenesis of Vibrio vulnificus. Microbes & Infection 2:177–188

    Article  CAS  Google Scholar 

  • Sun NW, Lindmark B, Söderblom T, Takade A, Westermark M, Oscarsson J, Jass J, Richter-Dahlfors A, Mizunoe Y, Uhlin BE (2003) Vesicle-mediated export and assembly of pore-forming oligomers of the enterobacterial ClyA cytotoxin. Cell 115:25

    Article  Google Scholar 

  • Surasilp T, Longyant S, Rukpratanporn S, Sridulyakul P, Sithigorngul P, Chaivisuthangkura P (2011) Rapid and sensitive detection of Vibrio vulnificus by loop-mediated isothermal amplification combined with lateral flow dipstick targeted to rpoS gene. Mol Cell Probes 46:1122–1131

    Google Scholar 

  • Suzuki S, Kuroe K, Yasue K, Kusuda R (1996) Antigenicity and N-terminal amino acid sequence of a 35 kDa porin-like protein of Listonella (Vibrio) anguillarum: comparison among different serotypes and other bacterial species. Lett Appl Microbiol 23:303–306

    Article  CAS  Google Scholar 

  • Tiziani S, Emwas AH, Lodi A, Ludwig C, Bunce CM, Viant MR, Günther UL (2008) Optimized metabolite extraction from blood serum for 1H nuclear magnetic resonance spectroscopy. Anal Biochem 377:16–23

    Article  CAS  Google Scholar 

  • Vanaporn M, Wand M, Michell SL, Sarkar-Tyson M, Ireland P, Goldman S, Kewcharoenwong C, Rinchai D, Lertmemongkolchai G, Titball RW (2011) Superoxide dismutase C is required for intracellular survival and virulence of Burkholderia pseudomallei. Microbiology 157:2392–2400

    Article  CAS  Google Scholar 

  • Volker Behrends TJB, Manuel Liebeke, Anne Cordes-Blauert, Syedah N. Ashraf, Chandrika Nair, James E. A. Zlosnik, Huw D. Williams, Jacob G. Bundy (2013): Metabolite profiling to characterize disease-related bacteria, gluconate excretion by Pseudomonas aeruginosa mutants and clinical isolates from cystic fibrosis patients. J Biol Chem 288, 15098–15109

  • Waggoner SA, Liebhaber SA (2003) Regulation of alpha-globin mRNA stability. Experimental Biology & Medicine 228:387–395

    Article  CAS  Google Scholar 

  • Wang P, Li G, Kain W (2004) Characterization and cDNA cloning of midgut carboxypeptidases from Trichoplusia ni. Insect Biochemistry & Molecular Biology 34:831–843

    Article  CAS  Google Scholar 

  • Wright AC, Simpson LM, Oliver JD (1981) Role of iron in the pathogenesis of Vibrio vulnificus infections. Infection & Immunity 34:503–507

    CAS  Google Scholar 

  • Wu Y, Li L (2013) Development of isotope labeling liquid chromatography-mass spectrometry for metabolic profiling of bacterial cells and its application for bacterial differentiation. Anal Chem 85:5755–5763

    Article  CAS  Google Scholar 

  • Yamamoto S, Morihara Y, Wakayama M, Tachiki T (2008) Theanine production by coupled fermentation with energy transfer using γ-glutamylmethylamide synthetase of Methylovorus mays no. 9. Biosci Biotechnol Biochem 72:1206–1211

    Article  CAS  Google Scholar 

  • Yeom J, Shin JH, Yang JY, Kim J, Hwang GS (2013): (1)H NMR-based metabolite profiling of planktonic and biofilm cells in Acinetobacter baumannii 1656-2. Plos One 8, e57730

  • Zhang D, Shan H, Ming T, Lu C, Zhou J, Su X (2017): A metabonomic analysis on the response of Enterobacter cloacae from coastal outfall for land-based pollutant under phoxim stress. Archives of microbiology, 1-9

  • Zhang P, Lu Y, Li C, Su X, Wang Z, ** C, Li Y, Li T (2013) Identification of differential expressed proteins and characterization their mRNA expression in thermally stressed Apostichopus japonicus. Comparative Biochemistry & Physiology Part D Genomics & Proteomics 8:194–200

    Article  CAS  Google Scholar 

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Acknowledgements

This work was supported by the Public Science and Technology Research Funds ocean projects (201105007, 201005016), the Regional Demonstration Project of Marine Economic Innovation and Development (2014, 2016), the Scientific Research Foundation of the Graduate School of Ningbo University, and K.C. Wong Magna Fund in Ningbo University. We thank the American Journal Experts (AJE) for English language editing. This manuscript was edited for English language by the American Journal Experts (AJE).

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Correspondence to **urong Su or Dewen Ding.

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Zhang, C., Wang, Z., Zhang, D. et al. Proteomics and 1H NMR-based metabolomics analysis of pathogenic Vibrio vulnificus aquacultures isolated from sewage drains. Environ Sci Pollut Res 24, 23704–23713 (2017). https://doi.org/10.1007/s11356-017-0007-1

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