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Marine bacterial activity against phytopathogenic Pseudomonas show high efficiency of Planctomycetes extracts

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Abstract

The genus Pseudomonas integrates several phytopathogenic species like P. syringae pv. syringae (Pss) and P. syringae pv. actinidae (Psa) and P viridiflava. Currently, effective treatments against these Pseudomonas phytopathogens are limited and mostly based on preventive measures or toxic agrochemicals, which pose risks of resistance-acquisition. Marine bacteria may represent new sources of sustainable bioactive compounds with use in agriculture. We assessed the anti-Pseudomonas activity of extracts from marine bacterial strains of seven genera of Actinobacteria and Planctomycetes. Pseudomonas strains were isolated from Portuguese orchards and included five Psa and one Pseudomonas sp. (B65). All the Pseudomonas strains used in this study shared common characteristics regarding swimming-motility, no biofilm-production in abiotic surfaces and production of indole-3-acetic acid (IAA) using a tryptophan-dependent pathway, showing the maintenance of virulence traits in culture. Four representative Pseudomonas strains were exposed to the marine Actinobacteria and Planctomycetes extracts obtained by liquid–liquid phase (LLPE). Only the planctomycetes Alienimonas chondri, Rhodopirellula rubra, Rubrinisphaera brasiliensis and Novipirellula caenicola inhibited Pseudomonas growth with percentages ranging from 56.48% to 83.08%. LC/HRMS dereplication of these bioactive extracts indicated the presence of several bioactive secondary metabolites like diketopiperazines, opening new perspectives for the use of these bacterial isolates and derived compounds in agriculture.

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Acknowledgements

This research was partially supported by the Strategic Funding UID/Multi/04423/2019 through national funds provided by FCT—Foundation for Science and Technology and European Regional Development Fund (ERDF), in the framework of the programme PT2020. FCT supported the PhD grant of NMP (SFRH/BD/138187/2018). GesPSA Kiwi: GesPSA Kiwi-Ferramenta Operacional para gestão sustentável do cancro bacteriano (Psa) da Actinídea-NORTE-01-0247-FEDER-033647, project funded by Fundo Europeu de Desenvolvimento Regional (FEDER) through Programa Operacional Regional do Norte (NORTE2020).

Funding

Fundação para a Ciência e a Tecnologia, UIDB/50006/2020, SFRH/BD/138187/2018 (Nuno Ponte’s PhD grant), European Regional Development Fund, UID/Multi/04423/2019, NORTE-01-0247-FEDER-033647.

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  1. Departamento de Biologia, Faculdade de Ciências da Universidade Do Porto, Rua Do Campo Alegre S/N, 4169-007, Porto, Portugal

    Emil Gimranov, José D. N. Santos, Inês Vitorino, Fernando Tavares, Conceição Santos, Nuno Mariz-Ponte & Olga Maria Lage

  2. Centro de Excelencia en Investigación de Medicamentos Innovadores en Andalucía, Fundación MEDINA, Parque Tecnológico de Ciencias de La Salud, Avenida del Conocimiento 34, 18016, Granada, Spain

    Emil Gimranov, Jesús Martín & Fernando Reyes

  3. Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Terminal de Cruzeiros Do Porto de Leixões, Avenida General Norton de Matos, 4450-208, Matosinhos, S/N, Portugal

    José D. N. Santos, Inês Vitorino & Olga Maria Lage

  4. CISAS - Centre for Research and Development in Agrifood Systems and Sustainability, Instituto Politécnico de Viana Do Castelo, 4900-347, Viana do Castelo, Portugal

    Luisa Moura

  5. CIBIO Research Centre in Biodiversity and Genetic Resources InBIO Associate Laboratory Faculty of Sciences, University of Porto, 4485-661, Vairão, Portugal

    Fernando Tavares & Nuno Mariz-Ponte

  6. LAQV/REQUIMTE, Faculdade de Ciências, Universidade Do Porto, Rua Do Campo Alegre, 4169-007, Porto, Portugal

    Conceição Santos & Nuno Mariz-Ponte

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  1. Emil Gimranov
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  2. José D. N. Santos
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  9. Nuno Mariz-Ponte
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  10. Olga Maria Lage
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Contributions

NMP, OL and CS designed the project. Phenotypic characterization for Pseudomonas spp. virulence traits was equally done by EG and NMP, also supported on work of LM and FT. Assays of growth inhibition and chemical analysis were performed by EG, JS, IV, and also supported by JM and FR. EG wrote the manuscript with the support of all authors.

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Correspondence to Nuno Mariz-Ponte or Olga Maria Lage.

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Gimranov, E., Santos, J.D.N., Vitorino, I. et al. Marine bacterial activity against phytopathogenic Pseudomonas show high efficiency of Planctomycetes extracts. Eur J Plant Pathol 162, 843–854 (2022). https://doi.org/10.1007/s10658-021-02441-2

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  • DOI: https://doi.org/10.1007/s10658-021-02441-2

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