SpringerLink
Log in

High Temperature Triggers Differential Expression of JUMONJI C (JmjC) Domain-Containing Histone Demethylase Genes in Leaf and Stolon Tissues of Potato (Solanum tuberosum L.) Genotypes

  • Published:
Journal of Plant Growth Regulation Aims and scope Submit manuscript

Abstract

Potato (Solanum tuberosum L.) is a modified stem and important food crop rich in starch, proteins, antioxidants, and vitamins. Potato is consumed globally; however, being a temperate region crop, it is negatively affected by temperature rise. Histone methylation dynamically regulates plant growth and development in response to environmental stresses. It is a reversible process mediated by distinct histone methyltransferases and histone demethylases, resulting in the modification of chromatin structure to activate or repress transcription. The JmjC domain-containing histone demethylase proteins are involved in histone demethylation, sustaining homeostasis of histone methylation levels. However, the potato JMJ gene family histone demethylases remain uncharacterized and their expression dynamics under heat stress are unknown. In this study, genome-wide analysis led to the identification of a total of 26 StJMJ proteins in potato, which were classified based on their conserved motifs, domains, and gene structure. Phylogenetic analysis categorized StJMJ gene family into five classes, named as KDM5/JARID1, KDM4/JHDM3, KDM3/JHDM2, JMJD6, and JmjC-only. In silico sub-cellular localization studies showed that StJMJ family members were uniformly distributed among various sub-cellular compartments. Promoter analysis revealed the presence of cis-regulatory elements involved in light, development, hormones, and stress responses. Furthermore, gene expression profiling of StJMJs in leaf and stolon tissues of heat-sensitive (HS) and heat-tolerant (HT) genotypes under elevated temperature was performed. The expression of StJMJ3, StJMJ6, StJMJ8, StJMJ10, StJMJ12, StJMJ15, StJMJ16, StJMJ17, StJMJ18, StJMJ19, and StJMJ21 were heat inducible in the leaf tissue of both genotypes, while showed antagonistic expression (upregulated in HS, downregulated in HT) in stolon tissue. Additionally, StJMJ11 was found to be significantly upregulated in the leaf and stolon of both genotypes. Collectively, this study hints towards the role of StJMJ genes as important epigenetic regulators modulating heat tolerance in potato.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Log in via an institution

Subscribe and save

Springer+ Basic
EUR 32.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or Ebook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5
Fig. 6
Fig. 7

Similar content being viewed by others

References

  • Accari SL, Fisher PR (2015) Emerging roles of JmjC domain-containing proteins. International Review of Cell Molecular Biology 319:165–220

    Article  CAS  PubMed  Google Scholar 

  • Ahmad A, Dong Y, Cao X (2011) Characterization of the PRMT gene family in rice reveals conservation of arginine methylation. PLoS ONE 6(8):e22664

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Ai Y, **g S, Cheng Z, Song B, **e C, Liu J, Zhou J (2021) DNA methylation affects photoperiodic tuberization in potato (Solanum tuberosum L.) by mediating the expression of genes related to the photoperiod and GA pathways. Horticulture Research. https://doi.org/10.1038/s41438-021-00619-7

    Article  PubMed  PubMed Central  Google Scholar 

  • Aiese Cigliano R, Sanseverino W, Cremona G, Ercolano MR, Conicella C, Consiglio FM (2013) Genome-wide analysis of histone modifiers in tomato: gaining an insight into their developmental roles. BMC Genomics 14:1–20

    Article  Google Scholar 

  • Artimo P, Jonnalagedda M, Arnold K, Baratin D, Csardi G, De Castro E, Duvaud S, Flegel V, Fortier A, Gasteiger E (2012) ExPASy: SIB bioinformatics resource portal. Nucleic Acids Research 40(W1):W597–W603

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Badeaux AI, Shi Y (2013) Emerging roles for chromatin as a signal integration and storage platform. Nature Reviews Molecular Cell Biology 14(4):211–224

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Bae S-H, Han HW, Moon J (2015) Functional analysis of the molecular interactions of TATA box-containing genes and essential genes. PLoS ONE 10(3):e0120848

    Article  PubMed  PubMed Central  Google Scholar 

  • Berger SL (2007) The complex language of chromatin regulation during transcription. Nature 447(7143):407–412

    Article  CAS  PubMed  Google Scholar 

  • Borchetia S, Gogoi M, Rawal HC, Patel PK, Chakraborty M, Saikia H, Nishad J, Ilango VJ, Barooah AK, Mondal TK (2022) Genome-wide identification of histone modification (HM) Gene family and their expression patterns under abiotic stress and different developmental stages of tea (Camellia assamica). Journal of Plant Growth Regulation. https://doi.org/10.1007/s00344-022-10761-8

    Article  Google Scholar 

  • Cattaneo P, Graeff M, Marhava P, Hardtke CS (2019) Conditional effects of the epigenetic regulator JUMONJI 14 in Arabidopsis root growth. Development 146(23):dev183905

    Article  CAS  PubMed  Google Scholar 

  • Chen B, Ali S, Zhang X, Zhang Y, Wang M, Zhang Q, **e L (2021) Genome-wide identification, classification, and expression analysis of the JmjC domain-containing histone demethylase gene family in birch. BMC Genomes 22(1):1–19

    Google Scholar 

  • Chen C, Chen H, He Y, **a R (2018) TBtools, a toolkit for biologists integrating various biological data handling tools with a user-friendly interface. BioRxiv 289660(10.1101):289660

    Google Scholar 

  • Cheng Y-Z, He G-Q, Yang S-D, Ma S-H, Ma J-P, Shang F-H-Z, Li X-F, ** H-Y, Guo D-L (2022) Genome-wide identification and expression analysis of JmjC domain–containing genes in grape under MTA treatment. Functional Integrative Genomics 22(5):783–795

    Article  CAS  PubMed  Google Scholar 

  • Chinnusamy V, Zhu J-K (2009) Epigenetic regulation of stress responses in plants. Current Opinion Plant Biologgy 12(2):133–139

    Article  CAS  Google Scholar 

  • Davis MW, Jorgensen EM (2022) ApE, a plasmid editor: a freely available DNA manipulation and visualization program. Frontires Bioinformaics 2:818619

    Article  Google Scholar 

  • Diambra LA (2011) Genome sequence and analysis of the tuber crop potato. Nature 475(7355):189–195

    Article  PubMed  Google Scholar 

  • Dong Y, Lu J, Liu J, Jalal A, Wang C (2020) Genome-wide identification and functional analysis of JmjC domain-containing genes in flower development of Rosa chinensis. Plant Molecular Biology 102:417–430

    Article  CAS  PubMed  Google Scholar 

  • Doyle MR, Amasino RM (2009) A single amino acid change in the enhancer of zeste ortholog CURLY LEAF results in vernalization-independent, rapid flowering in Arabidopsis. Plant Physiology 151(3):1688–1697

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Dutt S, Manjul AS, Raigond P, Singh B, Siddappa S, Bhardwaj V, Kawar PG, Patil VU, Kardile HB (2017) Key players associated with tuberization in potato: potential candidates for genetic engineering. Critical Reviews in Biotechnology 37(7):942–957

    Article  CAS  PubMed  Google Scholar 

  • Dutta M, Raturi V, Gahlaut V, Kumar A, Sharma P, Verma V, Gupta VK, Sood S, Zinta G (2022) The interplay of DNA methyltransferases and demethylases with tuberization genes in potato (Solanum tuberosum L.) genotypes under high temperature. Frontiers in Plant Science. https://doi.org/10.3389/fpls.2022.933740

    Article  PubMed  PubMed Central  Google Scholar 

  • Fan S, Wang J, Lei C, Gao C, Yang Y, Li Y, An N, Zhang D, Han M (2018) Identification and characterization of histone modification gene family reveal their critical responses to flower induction in apple. BMC Plant Biology 18(1):1–21

    Article  CAS  Google Scholar 

  • Fransz PF, De Jong JH (2002) Chromatin dynamics in plants. Current Opinion in Plant Biology 5(6):560–567

    Article  CAS  PubMed  Google Scholar 

  • Gan E-S, Xu Y, Wong J-Y, Geraldine Goh J, Sun B, Wee W-Y, Huang J, Ito T (2014) Jumonji demethylases moderate precocious flowering at elevated temperature via regulation of FLC in Arabidopsis. Nature Communications 5(1):5098

    Article  CAS  PubMed  Google Scholar 

  • Gu T, Han Y, Huang R, McAvoy RJ, Li Y (2016) Identification and characterization of histone lysine methylation modifiers in Fragaria vesca. Science Reports 6(1):23581

    Article  CAS  Google Scholar 

  • Han Y, Li X, Cheng L, Liu Y, Wang H, Ke D, Yuan H, Zhang L, Wang L (2016) Genome-wide analysis of soybean JmjC domain-containing proteins suggests evolutionary conservation following whole-genome duplication. Frontiers in Plant Science 7:1800. https://doi.org/10.3389/fpls.2016.01800

    Article  PubMed  PubMed Central  Google Scholar 

  • Hastilestari BR, Lorenz J, Reid S, Hofmann J, Pscheidt D, Sonnewald U, Sonnewald S (2018) Deciphering source and sink responses of potato plants (Solanum tuberosum L.) to elevated temperatures. Plant Cell Environment 41(11):2600–2616

    Article  CAS  PubMed  Google Scholar 

  • He K, Cao X, Deng X (2021a) Histone methylation in epigenetic regulation and temperature responses. Current Opinion in Plant Biology 61:102001

    Article  CAS  PubMed  Google Scholar 

  • He X, Wang Q, Pan J, Liu B, Ruan Y, Huang Y (2021b) Systematic analysis of JmjC gene family and stress-response expression of KDM5 subfamily genes in Brassica napus. PeerJ 9:e11137

    Article  PubMed  PubMed Central  Google Scholar 

  • Hernandez-Garcia CM, Finer JJ (2014) Identification and validation of promoters and cis-acting regulatory elements. Plant Science 217:109–119

    Article  PubMed  Google Scholar 

  • Hirsch CD, Hamilton JP, Childs KL, Cepela J, Crisovan E, Vaillancourt B, Hirsch CN, Habermann M, Neal B, Buell CR (2014) Spud DB: A resource for mining sequences, genotypes, and phenotypes to accelerate potato breeding. The Plant Genome. https://doi.org/10.3835/plantgenome2013.12.0042

    Article  Google Scholar 

  • Ho L, Crabtree GR (2010) Chromatin remodelling during development. Nature 463(7280):474–484

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Hu B, ** J, Guo A, Zhang H, Luo J, Gao G (2015) GSDS 20: An upgraded gene feature visualization server. Bioinformatics 31(8):1296–1297

    Article  PubMed  Google Scholar 

  • Hung FY, Chen JH, Feng YR, Lai YC, Yang S, Wu K (2020) Arabidopsis JMJ29 is involved in trichome development by regulating the core trichome initiation gene GLABRA3. The Plant Journal 103(5):1735–1743

    Article  CAS  PubMed  Google Scholar 

  • Jones MA, Covington MF, DiTacchio L, Vollmers C, Panda S, Harmer SL (2010) Jumonji domain protein JMJD5 functions in both the plant and human circadian systems. Proceeding of the National Academy of Science 107(50):21623–21628

    Article  CAS  Google Scholar 

  • Kondhare KR, Kumar A, Patil NS, Malankar NN, Saha K, Banerjee AK (2021) Development of aerial and belowground tubers in potato is governed by photoperiod and epigenetic mechanism. Plant Physiology 187(3):1071–1086

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Koul A, Sharma D, Kaul S, Dhar MK (2019) Identification and in silico characterization of cis-acting elements of genes involved in carotenoid biosynthesis in tomato. Biotechology 9:1–11. https://doi.org/10.1007/s13205-019-1798-1

    Article  Google Scholar 

  • Kumar A, Kondhare KR, Malankar NN, Banerjee AK (2021) The Polycomb group methyltransferase StE(z)2 and deposition of H3K27me3 and H3K4me3 regulate the expression of tuberization genes in potato. J Exp Bot 72(2):426–444

    Article  CAS  PubMed  Google Scholar 

  • Kumar S, Stecher G, Tamura K (2016) MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Molecular Biology and Evolution 33(7):1870–1874

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Lee K, Park OS, Seo PJ (2018) JMJ30-mediated demethylation of H3K9me3 drives tissue identity changes to promote callus formation in Arabidopsis. The Plant Journal 95(6):961–975

    Article  CAS  PubMed  Google Scholar 

  • Lescot M, Déhais P, Thijs G, Marchal K, Moreau Y, Van de Peer Y, Rouzé P, Rombauts S (2002) PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. Nucleic Acids Research 30(1):325–327

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Li D, Liu R, Singh D, Yuan X, Kachroo P, Raina R (2020a) JMJ14 encoded H3K4 demethylase modulates immune responses by regulating defence gene expression and pipecolic acid levels. New Phytologist 225(5):2108–2121

    Article  CAS  PubMed  Google Scholar 

  • Li Q, Sun W, Chen C, Dong D, Cao Y, Dong Y, Yu L, Yue Z, ** X (2022) Overexpression of histone demethylase gene SlJMJ524 from tomato confers Cd tolerance by regulating metal transport-related protein genes and flavonoid content in Arabidopsis. Plant Science 318:111205

    Article  CAS  PubMed  Google Scholar 

  • Li T, Chen X, Zhong X, Zhao Y, Liu X, Zhou S, Cheng S, Zhou D-X (2013) Jumonji C domain protein JMJ705-mediated removal of histone H3 lysine 27 trimethylation is involved in defense-related gene activation in rice. Plant Cell 25(11):4725–4736

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Li W, Liu H, Cheng ZJ, Su YH, Han HN, Zhang Y, Zhang XS (2011) DNA methylation and histone modifications regulate de novo shoot regeneration in Arabidopsis by modulating WUSCHEL expression and auxin signaling. PLoS Genetics 7(8):e1002243

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Li Z, Jiang G, Liu X, Ding X, Zhang D, Wang X, Zhou Y, Yan H, Li T, Wu K (2020b) Histone demethylase SlJMJ6 promotes fruit ripening by removing H3K27 methylation of ripening-related genes in tomato. New Phytologist 227(4):1138–1156

    Article  CAS  PubMed  Google Scholar 

  • Liang J, Zhang H, Yi L, Tang Y, Long H, Yu M, Deng G (2021) Identification of HvLRX, a new dehydration and light responsive gene in Tibetan hulless barley (Hordeum vulgare var. nudum). Genes Genomics 43:1445–1461

    Article  CAS  PubMed  Google Scholar 

  • Lopez L, Perrella G, Calderini O, Porceddu A, Panara F (2022) Genome-Wide Identification of Histone Modification Gene Families in the Model Legume Medicago Truncatula and Their Expression Analysis in Nodules. Plants 11(3):322

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Lu F, Cui X, Zhang S, Liu C, Cao X (2010) JMJ14 is an H3K4 demethylase regulating flowering time in Arabidopsis. Cell Research 20(3):387–390

    Article  PubMed  Google Scholar 

  • Lu F, Li G, Cui X, Liu C, Wang XJ, Cao X (2008) Comparative analysis of JmjC domain-containing proteins reveals the potential histone demethylases in Arabidopsis and rice. Journal of Integrative Plant Biology 50(7):886–896

    Article  CAS  PubMed  Google Scholar 

  • Luo M, Hung F-Y, Yang S, Liu X, Wu K (2014) Histone lysine demethylases and their functions in plants. Plant Molecular Biology Reporter 32:558–565

    Article  CAS  Google Scholar 

  • Ma S, Zhang Z, Long Y, Huo W, Zhang Y, Yang X, Zhang J, Li X, Du Q, Liu W (2022) Evolutionary history and functional diversification of the jmjc domain-containing histone demethylase gene family in plants. Plants 11(8):1041

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Mali S, Dutta M, Zinta G (2022) Genome editing advancements in potato (Solanum tuberosum L.): operational challenges and solutions. Journal Plant Biochemistry Biotechnology. https://doi.org/10.1007/s13562-022-00812-2

    Article  Google Scholar 

  • Mali S, Nayyar H, Rathour R, Sharma KD (2023) Genome wide identification and expression profiling of Early responsive to dehydration 6 (ERD6)-like gene family in chickpea (Cicer arietinum L.). Plant Gene. https://doi.org/10.1016/j.plgene.2023.100411

    Article  Google Scholar 

  • Oberkofler V, Bäurle I (2022) Inducible epigenome editing probes for the role of histone H3K4 methylation in Arabidopsis heat stress memory. Plant Physiology 189(2):703–714

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Pagnussat GC, Yu H-J, Ngo QA, Rajani S, Mayalagu S, Johnson CS, Capron A, **e L-F, Ye D, Sundaresan V (2005) Genetic and molecular identification of genes required for female gametophyte development and function in Arabidopsis. Development 132(3):603–614

    Article  CAS  PubMed  Google Scholar 

  • Patel DJ, Wang Z (2013) Readout of epigenetic modifications. Annual Review Biochemistry 82:81–118

    Article  CAS  Google Scholar 

  • Peng M, Ying P, Liu X, Li C, **a R, Li J, Zhao M (2017) Genome-wide identification of histone modifiers and their expression patterns during fruit abscission in litchi. Frontiers Plant Science 8:639. https://doi.org/10.3389/fpls.2017.00639

    Article  Google Scholar 

  • Qian C, Zhou M-M (2006) SET domain protein lysine methyltransferases: Structure, specificity and catalysis. Cell and Molecular Life Science 63:2755–2763

    Article  CAS  Google Scholar 

  • Qian S, Wang Y, Ma H, Zhang L (2015) Expansion and functional divergence of Jumonji C-containing histone demethylases: significance of duplications in ancestral angiosperms and vertebrates. Plant Physiology 168(4):1321–1337

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Qian Y, Chen C, Jiang L, Zhang J, Ren Q (2019) Genome-wide identification, classification and expression analysis of the JmjC domain-containing histone demethylase gene family in maize. BMC Genomics 20:1–16

    Article  Google Scholar 

  • Ren J, Wen L, Gao X, ** C, Xue Y, Yao X (2009) DOG 1.0: Illustrator of protein domain structures. Cell Research 19(2):271–273

    Article  CAS  PubMed  Google Scholar 

  • Saidi A, Hajibarat Z (2019) Characterization of cis-elements in hormonal stress-responsive genes in Oryza sativa. Asia Pacific Journal of Moleculra Biology and Biotechnology 27(1):95–102

    Article  Google Scholar 

  • Samach A, Wigge PA (2005) Ambient temperature perception in plants. Current Opinion in Plant Biology 8(5):483–486

    Article  PubMed  Google Scholar 

  • Schmittgen TD, Livak KJ (2008) Analyzing real-time PCR data by the comparative CT method. Nature Protocols 3(6):1101–1108

    Article  CAS  PubMed  Google Scholar 

  • Schultz J, Copley RR, Doerks T, Ponting CP, Bork P (2000) SMART: a web-based tool for the study of genetically mobile domains. Nucleic Acids Research 28(1):231–234

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Shen Q, Lin Y, Li Y, Wang G (2021) Dynamics of H3K27me3 modification on plant adaptation to environmental cues. Plants 10(6):1165

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Shen Y, Conde e Silva N, Audonnet L, Servet C, Wei W, Zhou D-X (2014) Over-expression of histone H3K4 demethylase gene JMJ15 enhances salt tolerance in Arabidopsis. Frontiers Plant Science 5:290. https://doi.org/10.3389/fpls.2014.00290

    Article  Google Scholar 

  • Shen Y, Wu X, Liu D, Song S, Liu D, Wang H (2016) Cold-dependent alternative splicing of a Jumonji C domain-containing gene MtJMJC5 in Medicago truncatula. Biochemical and Biophysical Research Communications 474(2):271–276

    Article  CAS  PubMed  Google Scholar 

  • Shi Y, Lan F, Matson C, Mulligan P, Whetstine JR, Cole PA, Casero RA, Shi Y (2004) Histone demethylation mediated by the nuclear amine oxidase homolog LSD1. Cell 119(7):941–953

    Article  CAS  PubMed  Google Scholar 

  • Song T, Zhang Q, Wang H, Han J, Xu Z, Yan S, Zhu Z (2018) OsJMJ703, a rice histone demethylase gene, plays key roles in plant development and responds to drought stress. Plant Physiology and Biochemistry 132:183–188

    Article  CAS  PubMed  Google Scholar 

  • Srivastava AK, Lu Y, Zinta G, Lang Z, Zhu J-K (2018) UTR-dependent control of gene expression in plants. Trends in Plant Science 23(3):248–259

    Article  CAS  PubMed  Google Scholar 

  • Sun Q, Zhou D-X (2008) Rice jmjC domain-containing gene JMJ706 encodes H3K9 demethylase required for floral organ development. Proceedings of the National Academy of Sciences 105(36):13679–13684

    Article  CAS  Google Scholar 

  • Sun Z, Wang X, Qiao K, Fan S, Ma Q (2021) Genome-wide analysis of JMJ-C histone demethylase family involved in salt-tolerance in Gossypium hirsutum L. Plant Physiology Biochemical 158:420–433

    Article  CAS  Google Scholar 

  • Tsukada Y-i, Fang J, Erdjument-Bromage H, Warren ME, Borchers CH, Tempst P, Zhang Y (2006) Histone demethylation by a family of JmjC domain-containing proteins. Nature 439(7078):811–816

    Article  CAS  PubMed  Google Scholar 

  • Wang J, Jiang X, Bai H, Liu C (2022a) Genome-wide identification, classification and expression analysis of the JmjC domain-containing histone demethylase gene family in Jatropha curcas L. Science Reports 12(1):6543

    Article  Google Scholar 

  • Wang P, Gao C, Bian X, Zhao S, Zhao C, **a H, Song H, Hou L, Wan S, Wang X (2016a) Genome-wide identification and comparative analysis of cytosine-5 DNA methyltransferase and demethylase families in wild and cultivated peanut. Frontiers Plant Science 7:7. https://doi.org/10.3389/fpls.2016.00007

    Article  Google Scholar 

  • Wang Q, Liu P, **g H, Zhou XF, Zhao B, Li Y, ** JB (2021) JMJ27-mediated histone H3K9 demethylation positively regulates drought-stress responses in Arabidopsis. New Phytologist 232(1):221–236

    Article  CAS  PubMed  Google Scholar 

  • Wang X, Pan C, Long J, Bai S, Yao M, Chen J, Sun G, Fan Y, Wang Z, Liu F (2022) Genome-wide identification of the jumonji C (JmjC) domaincontaining histone demethylase gene family in wheat and their expression analysis under drought stress. Frontiers Plant Science. https://doi.org/10.3389/fpls.2022.987257

    Article  Google Scholar 

  • Wang Y, Xue X, Zhu J-K, Dong J (2016b) Demethylation of ERECTA receptor genes by IBM1 histone demethylase affects stomatal development. Development 143(23):4452–4461

    CAS  PubMed  PubMed Central  Google Scholar 

  • Wilsker D, Patsialou A, Dallas PB, Moran E (2002) ARID proteins: a diverse family of DNA binding proteins implicated in the control of cell growth, differentiation, and development. Cell Growth Differentiation 13(3):95–106

    CAS  PubMed  Google Scholar 

  • Wittkopp PJ, Kalay G (2012) Cis-regulatory elements: molecular mechanisms and evolutionary processes underlying divergence. Nature Reviews Genetics 13(1):59–69

    Article  CAS  Google Scholar 

  • Xu J, Xu H, Liu Y, Wang X, Xu Q, Deng X (2015) Genome-wide identification of sweet orange (Citrus sinensis) histone modification gene families and their expression analysis during the fruit development and fruit-blue mold infection process. Frontiers Plant Science 6:607. https://doi.org/10.3389/fpls.2015.00607

    Article  Google Scholar 

  • Yamaguchi N (2021) Removal of H3K27me3 by JMJ proteins controls plant development and environmental responses in Arabidopsis. Frontiers Plant Science. https://doi.org/10.3389/fpls.2021.687416

    Article  Google Scholar 

  • Yamaguchi N, Ito T (2021) Expression profiling of H3K27me3 demethylase genes during plant development and in response to environmental stress in Arabidopsis. Plant Signal Behaviour 16(11):1950445

    Article  Google Scholar 

  • Yan Y, Shen L, Chen Y, Bao S, Thong Z, Yu H (2014) A MYB-domain protein EFM mediates flowering responses to environmental cues in Arabidopsis. Development Cell 30(4):437–448

    Article  CAS  Google Scholar 

  • Yu C-S, Cheng C-W, Su W-C, Chang K-C, Huang S-W, Hwang J-K, Lu C-H (2014) CELLO2GO: a web server for protein subCELlular LOcalization prediction with functional gene ontology annotation. PLoS ONE 9(6):e99368

    Article  PubMed  PubMed Central  Google Scholar 

  • Yu X, Li L, Li L, Guo M, Chory J, Yin Y (2008) Modulation of brassinosteroid-regulated gene expression by Jumonji domain-containing proteins ELF6 and REF6 in Arabidopsis. Proceedings National Academy Science 105(21):7618–7623

    Article  CAS  Google Scholar 

  • Zeng J, Jiang G, Liang H, Yan H, Kong X, Duan X, Li Z (2023) Histone demethylase MaJMJ15 is involved in the regulation of postharvest banana fruit ripening. Food Chemistry 407:135102

    Article  CAS  PubMed  Google Scholar 

  • Zhang J, Feng J, Liu W, Ren Z, Zhao J, Pei X, Liu Y, Yang D, Ma X (2020) Characterization and stress response of the JmjC domain-containing histone demethylase gene family in the Allotetraploid cotton species Gossypium hirsutum. Plants 9(11):1617

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Zhang S, Zhou B, Kang Y, Cui X, Liu A, Deleris A, Greenberg MV, Cui X, Qiu Q, Lu F (2015) C-terminal domains of histone demethylase JMJ14 interact with a pair of NAC transcription factors to mediate specific chromatin association. Cell Discovery 1:1–13

    Article  Google Scholar 

  • Zhang Y, Lv Y, Jahan N, Chen G, Ren D, Guo L (2018) Sensing of abiotic stress and ionic stress responses in plants. International Journey of Molecular Sciences 19(11):3298

    Article  Google Scholar 

  • Zheng S, Hu H, Ren H, Yang Z, Qiu Q, Qi W, Liu X, Chen X, Cui X, Li S (2019) The Arabidopsis H3K27me3 demethylase JUMONJI 13 is a temperature and photoperiod dependent flowering repressor. Nature Communications 10(1):1303

    Article  PubMed  PubMed Central  Google Scholar 

Download references

Acknowledgements

SM acknowledges support obtained from Department of Biotechnology (DBT-JRF), MD acknowledges University Grant Commission (UGC) for SRF fellowship, KG acknowledges CSIR-SRF, VR and PK acknowledge UGC for SRF fellowship. G.Z. acknowledges the support obtained from the projects funded by CSIR (MLP-201), CSIR-FIRST (MLP-178), and DST Start-up Research Grant (SRG), SERB (GAP-294). This manuscript represents CSIR-IHBT publication number 5377.

Funding

CSIR (MLP-201), CSIR-FIRST (MLP-178), and SERB (GAP-294).

Author information

Authors and Affiliations

  1. Biotechnology Division, CSIR-Institute of Himalayan Bioresource Technology (IHBT), Palampur, Himachal Pradesh, India

    Surbhi Mali, Madhushree Dutta, Komal Goel, Vidhi Raturi, Pravesh Kundu, Ravi Kumar, Vijay Gahlaut, Vishal Acharya & Gaurav Zinta

  2. Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, Uttar Pradesh, India

    Surbhi Mali, Madhushree Dutta, Komal Goel, Vidhi Raturi, Pravesh Kundu, Ravi Kumar, Vishal Acharya & Gaurav Zinta

  3. Department of Biotechnology, University Center for Research and Development, Chandigarh University, Mohali, Punjab, India

    Vijay Gahlaut

  4. ICAR-Central Potato Research Institute, Regional Station, Modipuram, Uttar Pradesh, India

    Vijai Kishor Gupta

  5. Division of Crop Improvement, ICAR-Central Potato Research Institute, Shimla, Himachal Pradesh, India

    Salej Sood

Authors
  1. Surbhi Mali
    View author publications

    You can also search for this author in PubMed Google Scholar

  2. Madhushree Dutta
    View author publications

    You can also search for this author in PubMed Google Scholar

  3. Komal Goel
    View author publications

    You can also search for this author in PubMed Google Scholar

  4. Vidhi Raturi
    View author publications

    You can also search for this author in PubMed Google Scholar

  5. Pravesh Kundu
    View author publications

    You can also search for this author in PubMed Google Scholar

  6. Ravi Kumar
    View author publications

    You can also search for this author in PubMed Google Scholar

  7. Vijay Gahlaut
    View author publications

    You can also search for this author in PubMed Google Scholar

  8. Vishal Acharya
    View author publications

    You can also search for this author in PubMed Google Scholar

  9. Vijai Kishor Gupta
    View author publications

    You can also search for this author in PubMed Google Scholar

  10. Salej Sood
    View author publications

    You can also search for this author in PubMed Google Scholar

  11. Gaurav Zinta
    View author publications

    You can also search for this author in PubMed Google Scholar

Contributions

SM performed experiments, analyzed data, and wrote the original draft. MD performed experiments. KG performed experiments. VR performed experiments. PK performed experiments. RK provided Bioinformatics support. VG analyzed data. VA provided bioinformatics support. VKG provided plant material. SS provided plant material and discussed data. GZ conceived the idea, analyzed data, and finalized the manuscript.

Corresponding author

Correspondence to Gaurav Zinta.

Ethics declarations

Conflicts of interest

The authors declare no conflicts of interest.

Additional information

Handling Editor: Vinay Kumar.

Publisher's Note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Supplementary Information

Below is the link to the electronic supplementary material.

Supplementary file1 (DOCX 18 kb)

Rights and permissions

Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Mali, S., Dutta, M., Goel, K. et al. High Temperature Triggers Differential Expression of JUMONJI C (JmjC) Domain-Containing Histone Demethylase Genes in Leaf and Stolon Tissues of Potato (Solanum tuberosum L.) Genotypes. J Plant Growth Regul (2023). https://doi.org/10.1007/s00344-023-11094-w

Download citation

  • Received:

  • Accepted:

  • Published:

  • DOI: https://doi.org/10.1007/s00344-023-11094-w

Keywords

Search

Navigation