Abstract
Proteasomes are large supramolecular protein complexes present in all prokaryotic and eukaryotic cells, where they perform targeted degradation of intracellular proteins. Until recently, it was generally accepted that prior to proteolytic degradation in proteasomes the proteins had to be targeted by ubiquitination: ATP-dependent attachment of (typically four sequential) residues of the low-molecular protein, ubiquitin, which involves the ubiquitin-activating enzyme, ubiquitin-conjugating enzyme, and ubiquitin ligase. Cytoplasmic and nucleoplasmic proteins labeled in this way are then digested in 26S proteasomes. However, it becomes increasingly clear that using this route the cell eliminates only a part of unwanted proteins. Many proteins can be cleaved by the 20S proteasome in an ATP-independent manner and without previous ubiquitination. Ubiquitin-independent degradation of proteins in proteasomes is a relatively new area of studies of the role of the ubiquitin-proteasome system. However, recent data obtained in this direction already correct existing concepts about proteasomal degradation of proteins and its regulation. Ubiquitin-independent proteasome degradation needs the main structural precondition in proteins: the presence of unstructured regions in the amino acid sequences that provide interaction with the proteasome. Taking into consideration that in humans almost half of all genes encode proteins that contain a certain proportion of intrinsically disordered regions, it appears that the list of proteins undergoing ubiquitin-independent degradation will demonstrate a further increase. Since 26S proteasomes account for only 30% of the total proteasome content in mammalian cells, most of the proteasomes exist in the form of 20S complexes. The latter suggests that ubiquitin-independent proteolysis performed by the 20S proteasome is a natural process of removing damaged proteins from the cell and maintaining a constant level of intrinsically disordered proteins. In this case, the functional overload of proteasomes in aging and/or other types of pathological processes, if it is not accompanied by triggering more radical mechanisms for the elimination of damaged proteins, organelles, and whole cells, has the most serious consequences for the whole organism.
Similar content being viewed by others
References
Tanaka, K., Proc. Jpn. Acad., Ser. B, 2009, vol. 85, pp. 12–36.
Hershko, A. and Ciechanover, A., Annu. Rev. Biochem., 1998, vol. 67, pp. 425–479.
Driscoll, J. and Goldberg, A.L., J. Biol. Chem., 1990, vol. 265, pp. 4789–4792.
Hershko, A. and Ciechanover, A., Annu. Rev. Biochem., 1992, vol. 61, pp. 761–807.
Schmidt, M. and Finley, D., Biochim. Biophys. Acta, 2014, vol. 1843, pp. 13–25.
Schwartz, A.L. and Ciechanover, A., Annu. Rev. Pharmacol. Toxicol., 2009, vol. 49, pp. 73–96.
Goldberg, A.L., Nature, 2003, vol. 426, pp. 895–899.
Borissenko, L. and Groll, M., Chem. Rev., 2007, vol. 107, pp. 687–717.
Sharon, M., Witt, S., Felderer, K., Rockel, B., Baumeister, W., and Robinson, C.V., J. Biol. Chem., 2006, vol. 281, pp. 9569–9575.
Kish-Trier, E. and Hill, C.P., Annu. Rev. Biophys., 2013, vol. 42, pp. 29–49.
Husnjak, K., Elsasser, S., Zhang, N., Chen, X., Randles, L., Shi, Y., Hofmann, K., Walters, K.J., Finley, D., and Dikic, I., Nature, 2008, vol. 453, pp. 481–488.
Elsasser, S., Chandler-Militello, D., Müller, B., Hanna, J., and Finley, D., J. Biol. Chem., 2004, vol. 279, pp. 26817–26822.
Finley, D., Annu. Rev. Biochem., 2009, vol. 78, pp. 477–513.
Lasker, K., Forster, F., Bohn, S., Walzthoeni, T., Villa, E., Unverdorben, P., et al., Proc. Natl. Acad. Sci. USA, 2012, vol. 109, pp. 1380–1387.
Glickman, M.H. and Raveh, D., FEBS Lett., 2005, vol. 579, pp. 3214–3223.
Dubiel, W., Pratt, G., Ferrell, K., and Rechsteiner, M., J. Biol. Chem., 1992, vol. 267, pp. 22369–22377.
Pickering, A.M. and Davies, K.J.A., Arch. Biochem. Biophys., 2012, vol. 523, pp. 181–190.
Zhang, Y., Liu, S., Zuo, Q., Wu, L., Ji, L., Zhai, W., **ao, J., Chen, J., and Li, X., Free Radic. Biol. Med., 2015, vol. 82, pp. 42–49.
Cascio, P., Call, M., Petre, B.M., Walz, T., and Goldberg, A.L., EMBO J., 2002, vol. 21, pp. 2636–2645.
Roessler, M., Rollinger, W., Mantovani-Endl, L., Hagmann, M.L., Palme, S., Berndt, P., et al., Mol. Cell. Proteomics, 2006, vol. 5, pp. 2092–2101.
Ortega, J., Heymann, J.B., Kajava, A.V., Ustrell, V., Rechsteiner, M., and Steven, A.C., J. Mol. Biol., 2005, vol. 346, pp. 1221–1227.
Ustrell, V., Hoffman, L., Pratt, G., and Rechsteiner, M., EMBO J., 2002, vol. 21, pp. 3516–3525.
Griffin, T.A., Nandi, D., Cruz, M., Fehling, H.J., Kaer, L.V., Monaco, J.J., et al., J. Exp. Med., 1998, vol. 187, pp. 97–104.
Kloetzel, P.M. and Ossendorp, F., Curr. Opin. Immunol., 2004, vol. 16, pp. 76–81.
Pickering, A.M., and Davies, K.J.A., Arch. Biochem. Biophys., 2012, vol. 523, pp. 181–190.
Kimura, H., Caturegli, P., Takahashi, M., and Suzuki, K., J. Immunol. Res., 2015, vol. 2015, 541984. Epub 2015 Oct 8. doi 10.1155/2015/541984
Ben-Nissan, G. and Sharon, M., Biomolecules, 2014, vol. 4, pp. 862–884.
Orlowski, M. and Wilk, S., Arch. Biochem. Biophys., 2003, vol. 415, pp. 1–5.
Erales, J. and Coffino, P., Biochim. Biophys. Acta, 2014, vol. 1843, pp. 216–221.
Sánchez-Lanzas, R. and Castaño, J.G., Biomolecules, 2014, vol. 4, pp. 1140–1154.
Raynes, R.I., Pomatto, L.C.D., and Davies, K.J.A., Molec. Aspects Med., 2016, vol. 50, pp. 41–55.
Morozov, A.V., Spasskaya, D.S., Karpov, D.S., and Karpov, V.L., FEBS Letts., 2014, vol. 588, pp. 3713–3719.
Uversky, V.N., Oldfield, C.J., and Dunker, A.K., J. Mol. Recognit., 2005, vol. 18, pp. 343–384.
Li, X., Amazit, L., Long, W., Lonard, D.M., Monaco, J.J., and O’Malley, B.W., Mol. Cell, 2007, vol. 26, pp. 831–842.
Sheaff, R.J., Singer, J.D., Swanger, J., Smitherman,M., Roberts, J.M., and Clurman, B.E., Mol. Cell, 2000, vol. 5, pp. 403–410.
Zhang, Z., Wang, H., Li, M., Agrawal, S., Chen, X., and Zhang, R., J. Biol. Chem., 2004, vol. 279, no. 16, pp. 16000–16006.
Tambyrajah, W.S., Bowler, L.D., Medina-Palazon, C., and Sinclair, A.J., Arch. Biochem. Biophys., 2007, vol. 466, pp. 186–193.
Garate, M., Wong, R.P., Campos, E.I., Wang, Y., and Li, G., EMBO Rep., 2008, vol. 9, pp. 576–581.
Asher, G., Tsvetkov, P., Kahana, C., and Shaul, Y., Genes Dev., 2005, vol. 19, pp. 316–321.
Rokah, O.H., Shpilberg, O., and Granot, G., PLoS One, 2010, vol. 5, e11401.
Patrick, B.A., Gong, X., and Jaiswal, A.K., Oncogene, 2011, vol. 30, pp. 1098–1107.
Kalejta, R.F. and Shenk, T., Proc. Natl. Acad. Sci. USA, 2003, vol. 100, pp. 3263–3268.
Wiggins, C.M., Tsvetkov, P., Johnson, M., Joyce, C.L., Lamb, C.A., Bryant, N.J., Komander, D., Shaul, Y., and Cook, S.J., J. Cell Sci., 2011, vol. 124, pp. 969–977.
Stewart, D.P., Koss, B., Bathina, M., Perciavalle, R.M., Bisanz, K., and Opferman, J.T., Mol. Cell. Biol., 2010, vol. 30, pp. 3099–3110.
Adler, J., Reuven, N., Kahana, C., and Shaul, Y., Mol. Cell. Biol., 2010, vol. 30, pp. 3767–3778.
Alvarez-Castelao, B. and Castano, J.G., FEBS Lett., 2005, vol. 579, pp. 4797–4802.
Asher, G., Bercovich, Z., Tsvetkov, P., Shaul, Y., and Kahana, C., Mol. Cell, 2005, vol. 17, pp. 645–655.
Kong, X., Alvarez-Castelao, B., Lin, Z.M., Castano, J.G., and Caro, J., J. Biol. Chem., 2007, vol. 282, pp. 15498–15505.
Xu, J. and Jaiswal, A.K., J. Biol. Chem., 2012, vol. 287, pp. 41608–41618.
Adamovich, Y., Shlomai, A., Tsvetkov, P., Umansky, K.B., Reuven, N., Estall, J.L., Spiegelman, B.M., and Shaul, Y., Mol. Cell. Biol., 2013, vol. 33, pp. 2603–2613.
David, D.C., Layfield, R., Serpell, L., Narain, Y., Goedert, M., and Spillantini, M.G., J. Neurochem., 2002, vol. 83, pp. 176–185.
Cardozo, C. and Michaud, C., Arch. Biochem. Biophys., 2002, vol. 408, pp. 103–110.
Tofaris, G.K., Layfield, R., and Spillantini, M.G., FEBS Letts., 2001, vol. 509, pp. 22–26.
Asher, G., Reuven, N., and Shaul, Y., BioEssays, 2006, vol. 28, pp. 844–849.
Hwang, J., Winkler, L., and Kalejta, R.F., Biochim. Biophys. Acta, 2011, vol. 1816, pp. 147–157.
Keppler, B.R. and Archer, T.K., J. Biol. Chem., 2010, vol. 285, pp. 35665–35674.
Ban, Y., Ho, C.W., Lin, R.K., Lyu, Y.L., and Liu, L.F., Mol. Cell Biol., 2013, vol. 33, pp. 4008–4016.
Ling, M.T., Chiu, Y.T., Lee, T.K., Leung, S.C., Fung, M.K., Wang, X., Wong, K.F., and Wong, Y.C.J., Mol. Biol., 2008, vol. 382, pp. 34–43.
Alvarez-Castelao, B. and Castano, J.G., FEBS Letts., 2005, vol. 579, pp. 4797–4802.
Zhang, W. and Wei, Q., Biochem. Biophys. Res. Commun., 2011, vol. 407, pp. 668–673.
Mathes, E., O’Dea, E.L., Hoffmann, A., and Ghosh, G., EMBO J., 2008, vol. 27, no. 9, pp. 1357–1367.
Cho, S., Choi, Y.J., Kim, J.M., Jeong, S.T., Kim, J.H., Kim, S.H., and Ryu, S.E., FEBS Letts., 2001, vol. 498, pp. 62–66.
Bae, M.H., Jeong, C.H., Kim, S.H., Bae, M.K., Jeong, J.W., Ahn, M.Y., et al., Biochim. Biophys. Acta, 2002, vol. 1592, pp. 163–167.
Dong, J., Chen, W., Welford, A., and Wandinger-Ness, A., J. Biol. Chem., 2004, vol. 279, pp. 21334–21342.
Shu, F., Guo, S., Dang, Y., Qi, M., Zhou, G., Guo, Z., et al., Mol. Cell. Biochem., 2003, vol. 254, pp. 157–162.
Touitou, R., Richardson, J., Bose, S., Nakanishi, M., Rivett, J., and Allday, M.J., EMBO J., 2001, vol. 20, pp. 2367–2375.
Wang, B., Liu, K., Lin, H.Y., Bellam, N., Lin, S., and Li, W.C., Mol. Cell. Biol., 2010, vol. 30, pp. 1508–1527.
Fan, J., Zhang, Y.Q., Li, P., Hou, M., Tan, L., Wang, X., and Zhu, Y.S., Acta Biochim. Biophys. Sin., 2004, vol. 36, pp. 42–46.
Tambyrajah, W.S., Bowler, L.D., Medina-Palazon, C., and Sinclair, A.J., Arch. Biochem. Biophys., 2007, vol. 466, pp. 186–193.
Yuan, F., Ma, Y., You, P., Lin, W., Lu, H., Yu, Y., et al., Biosci. Rep., 2013, vol. 33, pp. 555–565.
Sdek, P., Ying, H., Chang, D.L., Qiu, W., Zheng, H., Touitou, R., Allday, M.J., and **ao, Z.X., Mol. Cell, 2005, vol. 20, pp. 699–708.
Ying, H. and **ao, Z.X., Cell Cycle, 2006, vol. 5, no. 5, pp. 506–508.
Pakay, J.L., Diesch, J., Gilan, O., Yip, Y.Y., Sayan, E., Kolch, W., Mariadason, J.M., Hannan, R.D., Tulchinsky, E., and Dhillon, A.S., Oncogene, 2012, vol. 31, pp. 1817–1824.
Gruendler, C., Lin, Y., Farley, J., and Wang, T., J. Biol. Chem., 2001, vol. 276, pp. 46533–46543.
Murai, N., Murakami, Y., Tajima, A., and Matsufuji, S., Sci. Reports, 2018, vol. 8, 3005. doi 10.1038/s41598–018-21189-0
Yi, P., Feng, Q., Amazit, L., Lonard, D.M., Tsai, S.Y., Tsai, M.J., and O’Malley, B.W., Mol. Cell, 2008, vol. 29, pp. 465–476.
MacDonald, J.I., Verdi, J.M., and Meakin, S.O., J. Mol. Neurosci., 1999, vol. 13, pp. 141–158.
Morozov, A.V., Astakhova, T.M., Garbuz, D.G., Krasnov, G.S., Bobkova, N.V., Zatsepina, O.G., Karpov, V.L., and Evgen’ev, M.B., Cell Stress and Chaperones, 2017, vol. 22, pp. 687–697.
Dachsel, J.C., Lucking, C.B., Deeg, S., Schultz, E., Lalowski, M., Casademunt, E., et al., FEBS Lett., 2005, vol. 579, pp. 3913–3919.
Alvarez-Castelao, B., Goethals, M., Vandekerckhove, J., and Castano, J.G., Biochim. Biophys. Acta, 2014, vol. 1843, pp. 352–365.
Alvarez-Castelao, B., Munoz, C., Sanchez, I., Goethals, M., Vandekerckhove, J., and Castano, J.G., Biochim. Biophys. Acta, 2012, vol. 1823, pp. 524–533.
David, D.C., Layfield, R., Serpell, L., Narain, Y., Goedert, M., and Spillantini, M.G., J. Neurochem., 2002, vol. 83, pp. 176–185.
Cardozo, C. and Michaud, C., Arch. Biochem. Biophys., 2002, vol. 408, pp. 103–110.
Belogurov, A., Jr., Kuzina, E., Kudriaeva, A., Kononikhin, A., Kovalchuk, S., Surina, Y., Smirnov, I., Lomakin, Y., Bacheva, A., Stepanov, A., Karpova, Y., Lyupina, Y., Kharybin, O., Melamed, D., Ponomarenko, N., Sharova, N., Nikolaev, E., and Gabibov, A., FASEB J., 2015, vol. 29, pp. 1901–1913. doi 10.1096/fj.14-259333
Sabouny, R., Fraunberger, E., Geoffrion, M., Ng, A.C., Baird, S.D., Screaton, R.A., Milne, R., McBride, H.M., and Shutt, T.E., Antioxidants Redox Signaling, 2017, vol. 27, pp. 1447–1459.
Asher, G., Bercovich, Z., Tsvetkov, P., Shaul, Y., and Kahana, C., Mol. Cell, 2005, vol. 17, pp. 645–655.
Kahana, C., Biochem. J., 2016, vol. 473, no. 24, pp. 4551–4558.
Erales, J. and Coffino, P., Biochim. Biophys. Acta, 2014, vol. 1843, pp. 216–221.
Peña, M.M., Melo, S.P., **ng, Y.Y., White, K., Barbour, K.W., and Berger, F.G., J. Biol. Chem., 2009, vol. 284, pp. 31597–31607. doi 10.1074/jbc.M109.038455
Tandle, A.T., Calvani, M., Uranchimeg, B., Zahavi, D., Melillo, G., and Libutti, S.K., Exp. Cell Res., 2008, vol. 315, pp. 1850–1859.
Yang, L., Tang, Z., Zhang, H., Kou, W., Lu, Z., Li, X., Li, Q., and Miao, Z., Cell. Physiol. Biochem., 2013, vol. 31, pp. 952–959.
Uchimura, Y., Barton, L.F., Rada, C., and Neuberger, M.S., J. Exp. Med., 2011, vol. 208, pp. 2385–2391.
Yuksek, K., Chen, W.L., Chien, D., and Ou, J.H., J. Virol., 2009, vol. 83, pp. 612–621.
Kwak, J., Indira Tiwari, I., and Jang, K.L., J. Gen. Virol., 2017, vol. 98, pp. 56–67.
Guo, J., Chen, D., Gao, X., Hu, X., Zhou, Y., Wu, C., Wang, Y., Chen, J., Pei, R., and Chen, X., Viruses, 2017, vol. 9, 285. doi 10.3390/v9100285
Touitou, R., O’Nions, J., Heaney, J., and Allday, M.J., J. Gen. Virol., 2005, vol. 86, pp. 1269–1277.
Beraud, C. and Greene, W.C., J. Acquir. Immune Defic. Syndr. Hum. Retrovirol., 1996, vol. 13, pp. S76–S84.
Fehr, A.R. and Yu, D., J. Virol., 2010, vol. 84, pp. 291–302.
Kastle, M., Reeg, S., Rogowska-Wrzesinska, A., and Grune, T., Free Radic. Biol. Med., 2012, vol. 53, pp. 1468–1477.
Kahana, C. and Reiss, Y., Methods Mol. Biol., 2005, vol. 301, pp. 83–96.
Tarcsa, E., Szymanska, G., Lecker, S., O’Connor, C.M., and Goldberg, A.L., J. Biol. Chem., 2000, vol. 275, pp. 20295–20301.
Benaroudj, N., Tarcsa, E., Cascio, P., and Goldberg, A.L., Biochimie, 2001, vol. 83, pp. 311–318.
Asher, G., Lotem, J., Sachs, L., Kahana, C., and Shaul, Y., Proc. Natl. Acad. Sci. USA, 2002, vol. 99, pp. 13125–13130.
Jariel-Encontre, I., Pariat, M., Martin, F., Carillo, S., Salvat, C., and Piechaczyk, M., J. Biol. Chem., 1995, vol. 270, pp. 11623–11627.
Zhang, Y., Liu, S., Zuo, Q., Wu, L., Ji, L., Zhai, W., **ao, J., Chen, J., and Li, X., Free Radic. Biol. Med., 2015, vol. 82, pp. 42–49.
Li, X., Amazit, L., Long, W.W., David, M., Monaco, J.J., and O’Malley, B.W., Mol. Cell, 2007, vol. 26, pp. 831–842.
Chen, X. Y., Barton, L.F., Chi, Y., Clurman, B.E., James, M., and Roberts, J.M., Mol. Cell, 2007, vol. 26, pp. 843–852.
Moriishi, K., Mochizuki, R., Moriya, K., Miyamoto, H., Mori, Y., Abe, T., Murata, S., Tanaka, K.; Miyamura, T., Suzuki, T., Koike, K., and Matsuura, Y., Proc. Natl. Acad. Sci. USA, 2007, vol. 104, no. 5, pp. 1661–1666.
Winkler, L.L., Hwang, J., and Kalejta, R.F., J. Virol., 2013, vol. 87, no. 8, pp. 4665–5671. doi 10.1128/JVI.03301-12
Pakay, J.L., Diesch, J., Gilan, O., Yip, Y.-Y., Sayan, E., Kolch, W., Mariadason, J.M., Hannan, R.D., Tulchinsky, E., and Dhillon, A.S., Oncogene, 2012, vol. 31, pp. 1817–1824.
Medvedev, A.E., Buneeva, O.A., Kopylov, A.T., Tikhonova, O.V., Medvedeva, M.V., Nerobkova, L.N., Kapitsa, I.G., and Zgoda, V.G., Biochemistry (Moscow), 2017, vol. 83, no. 3, pp. 112–122.
Buneeva, O.A., Gnedenko, O.V., Kopylov, A.T., Medvedeva, M.V., Zgoda, V.G., Ivanov, A.S., and Medvedev, A.E., Biochemistry (Moscow), 2017, vol. 83, no. 9, pp. 1338–1344.
Gatto, M., Iaccarino, L., Ghirardello, A., Bassi, N., Pontisso, P., Punzi, L., Shoenfeld, Y., and Doria, A., Clinical Reviews in Allergy & Immunology, 2013, vol. 45, pp. 267–280.
Kroeger, H., Miranda, E., MacLeod, I., Perez, J., Crowther, D.C., Marciniak, S.J., and Lomas, D.A., J. Biol. Chem., 2009, vol. 284, pp. 22793–22802.
Hamerman, J.A., Hayashi, F., Schroeder, L.A., Gygi, S.P., Haas, A.L., Hampson, L., Coughlin, P., Aebersold, R., and Aderem, A., J. Immunol., 2002, vol. 168, pp. 2415–2422.
Zhang, H., Wang, Y., Li, J., Yu, J., Pu, J., Li, L., Zhang, H., Zhang, S., Peng, G., Yang, F., and Liu, P., J. Proteome Res., 2011, vol. 10, pp. 4757–4768.
Matsunaga, T., Iguchi, K., Nakajima, T., Koyama, I., Miyazaki, T., Inoue, I., Kawai, S., Katayama, S., Hirano, K., Hokari, S., and Komoda, T., Biochem. Biophys. Res. Communs., 2001, vol. 287, pp. 714–720.
Baines, C.P., Zhang, J., Wang, G., Zheng, Y., **u, J.X., Cardwell, E.M., Bolli, R., and **, P., Circulation Res., 2002, vol. 90, pp. 390–397.
Cascone, A., Bruelle, C., Lindholm, D., Bernardi, P., and Eriksson, O., PLoS One, 2012, vol. 7, e35357.
Simo, S. and Cooper, J.A., Developmental Cell, 2013, vol. 27, pp. 399–411.
Kikuchi, H., Yuan, B., Yuhara, E., Takagi, N., and Toyoda, H., Int. J. Oncol., 2013, vol. 43, pp. 2046–2056.
Cane, A., Tournaire, M.C., Barritault, D., and Crumeyrolle-Arias, M., Biochem. Biophys. Res. Communs., 2000, vol. 276, pp. 379–384.
Igosheva, N., Lorz, C., O’Conner, E., Glover, V., and Mehmet, H., Neurochem. Int., 2005, vol. 47, pp. 216–224.
Song, J., Hou, L., Ju, C., Zhang, J., Ge, Y., and Yue, W., Eur. J. Pharmacol., 2013, vol. 702, pp. 235–241.
Ma, Z., Hou, L., Jiang, Y., Chen, Y., and Song, J., Oncology Reports, 2014, vol. 32, pp. 2111–2117.
Hirayama, K., Aoki, S., Nishikawa, K., Matsumoto, T., and Wada, K., Bioorg. Med. Chem., 2007, vol. 15, pp. 6810–6818.
Zhang, P., Bi, C., Schmitt, S.M., Li, X., Fan, Y., Zhang, N., and Dou, Q.P., Int. J. Mol. Med., 2014, vol. 34, pp. 870–879.
Grune, T., Catalgol, B., Licht, A., Ermak, G., Pickering, A.M., Ngo, J.K., and Davies, K.J., Free Radic. Biol. Med., 2011, vol. 51, pp. 1355–1364.
Tsvetkov, P., Myers, N., Eliav, R., Adamovich, Y., Hagai, T., Adler, J., Navon, A., and Shaul, Y., J. Biol. Chem., 2014, vol. 289, pp. 11272–11281.
Huang, Q., Wang, H., Perry, S.W., and Figueiredo-Pereira, M.E., J. Biol. Chem., 2013, vol. 288, pp. 12161–12174.
Stadtmueller, B.M. and Hill, C.P., Mol. Cell, 2011, vol. 41, pp. 8–19.
Sugiyama, M., Sahashi, H., Kurimoto, E., Takata, S., Yagi, H., Kanai, K., Sakata, E., Minami, Y., Tanaka, K., and Kato, K., Biochem. Biophys. Res. Communs., 2013, vol. 432, pp. 141–145.
Whitby, F.G., Masters, E.I., Kramer, L., Knowlton, J.R., Yao, Y., Wang, C.C., and Hill, C.P. Nature, 2000, vol. 408, pp. 115–120.
Ortega, J., Heymann, J.B., Kajava, A.V., Ustrell, V., Rechsteiner, M., and Steven, A.C., J. Mol. Biol., 2005, vol. 346, pp. 1221–1227.
Lee, C.S., Lee, C., Hu, T., Nguyen, J.M., Zhang, J., Martin, M.V., Vawter, M.P., Huang, E.J., and Chan, J.Y., Proc. Natl. Acad. Sci. USA, 2011, vol. 108, pp. 8408–8413.
Radhakrishnan, S.K., Lee, C.S., Young, P., Beskow, A., Chan, J.Y., and Deshaies, R.J., Mol. Cell, 2010, vol. 38, pp. 17–28.
Lee, C.S., Ho, D.V., and Chan, J.Y., FEBS J., 2013, vol. 280, pp. 3609–3620.
Tsuchiya, Y., Taniguchi, H., Ito, Y., Morita, T., Karim, M.R., Ohtake, N., et al., Mol. Cell Biol., 2013, vol. 33, pp. 3461–3472.
Karpov, D.S., Preobrazhenskaya, O.V., and Karpov, V.L., Mol. Biol. (Moscow) 2009, vol. 43, no. 2, pp. 223–231.
Kwak, M.K., Cho, J.M., Huang, B., Shin, S., and Kensler, T.W., Free Radic. Biol. Med., 2007, vol. 43, pp. 809–817.
Ethen, C.M., Hussong, S.A., Reilly, C., Feng, X., Olsen, T.W., and Ferrington, D.A., FEBS Letts., 2007, vol. 581, pp. 885–890.
Pickering, A.M., Koop, A.L., Teoh, C.Y., Ermak, G., Grune, T., and Davies, K.J., Biochem. J., 2010, vol. 432, pp. 585–594.
Seifert, U., Bialy, L.P., Ebstein, F., Bech-Otschir, D., Voigt, A., Schroter, F., Prozorovski, T., et al., Cell, 2010, vol. 142, pp. 613–624.
Garate, M., Wong, R.P., Campos, E.I., Wang, Y., Li, G., EMBO Rep., 2008, vol. 9, pp. 576–581.
Rokah, O.H., Shpilberg, O., and Granot, G., PLoS One, 2010, vol. 5, e11401.
Moscovitz, O., Tsvetkov, P., Hazan, N., Michaelevski, I., Keisar, H., Ben-Nissan, G., Shaul, Y., and Sharon, M., Mol. Cell, 2012, vol. 47, pp. 76–86.
Xu, J., Patrick, B.A., and Jaiswal, A.K., J. Biol. Chem., 2013, vol. 288, pp. 34799–34808.
Gong, X., Kole, L., Iskander, K., and Jaiswal, A.K., Cancer Res., 2007, vol. 67, pp. 5380–5388.
Conconi, M., Szweda, L.I., Levine, R.L., Stadtman, E.R., and Friguet, B., Arch. Biochem. Biophys., 1996, vol. 331, pp. 232–240.
Conconi, M., Petropoulos, I., Emod, I., Turlin, E., Biville, F., and Friguet, B., Biochem. J., 1998, vol. 333, pp. 407–415.
Mayer-Kuckuk, P., Ullrich, O., Ziegler, M., Grune, T., and Schweiger, M., Biochem. Biophys. Res. Commun., 1999, vol. 259, pp. 576–581.
Ullrich, O., Reinheckel, T., Sitte, N., Hass, R., Grune, T., and Davies, K.J., Proc. Natl. Acad. Sci. USA, 1999, vol. 96, pp. 6223–6228.
Touitou, R., Richardson, J., Bose, S., Nakanishi, M., Rivett, J., and Allday, M.J., EMBO J., 2001, vol. 20, pp. 2367–2375.
Liu, X., Huang, W., Li, C., Li, P., Yuan, J., Li, X., Qiu, X.B., Ma, Q., and Cao, C., Mol. Cell, 2006, vol. 22, pp. 317–327.
Feng, Y., Longo, D.L., and Ferris, D.K., Cell Growth Differ., 2001, vol. 12, pp. 29–37.
Bose, S., Stratford, F.L., Broadfoot, K.I., Mason, G.G., and Rivett, A.J., Biochem. J., 2004, vol. 378, pp. 177–184.
Baumeister, W., Walz, J., Zühl, F., and Seemüller, E., Cell, 1998, vol. 92, no. 3, pp. 367–380.
Hirsch, C. and Ploegh, H.L., Trends Cell Biol., 2000, vol. 10, no. 7, pp. 268–272.
Ogiso, Y., Tomida, A., and Tsuruo, T., Cancer Res., 2002, vol. 62, pp. 5008–5012.
Blickwedehl, J., McEvoy, S., Wong, I., Kousis, P., Clements, J., Elliott, R., Cresswell, P., Liang, P., and Bangia, N., Radiat. Res., 2007, vol. 167, pp. 663–674.
Yoshii, S.R., Kishi, C., Ishihara, N., and Mizushima, N., J. Biol. Chem., 2011, vol. 286, pp. 19630–19640.
Bochmann, I., Ebstein, F., Lehmann, A., Wohlschlaeger, J., Sixt, S.U., Kloetzel, P.M., and Dahlmann, B., J. Cell. Mol. Med., 2014, vol. 18, pp. 59–68.
Majetschak, M., Perez, M., Sorell, L.T., Lam, J., Maldonado, M.E., and Hoffman, R.W., Clin. Vaccine Immunol., 2008, vol. 15, pp. 1489–1493.
Majetschak, M., Zedler, S., Romero, J., Albright, J.M., Kraft, R., Kovacs, E.J., Faist, E., and Gamelli, R.L., J. Burn Care Res., 2010, vol. 31, pp. 243–250.
Mueller, O., Anlasik, T., Wiedemann, J., Thomassen, J., Wohlschlaeger, J., Hagel, V., et al., J. Mol. Neurosci., 2012, vol. 46, pp. 509–515.
Roth, G.A., Moser, B., Krenn, C., Roth-Walter, F., Hetz, H., Richter, S., et al., Eur. J. Clin. Invest., 2005, vol. 35, pp. 399–403.
Sixt, S.U. and Dahlmann, B., Biochim. Biophys. Acta, 2008, vol. 1782, pp. 817–823.
Tsimokha, A.S., Zaykova, J.J., Bottrill, A., and Barlev, N.A., J. Cell Physiol., 2017, vol. 232, no. 4, pp. 842–851. doi 10.1002/jcp.25492
Zaykova, J.J., Kulichkova, V.A., Ermolaeva, Yu.B., Bottrill, A., Barlev, N.A., and Tsimokha, A.S., Tsitologiya, 2013, vol. 55, no. 2, pp. 111–122.
Kulichkova, V.A., Artamonova, T.O., Lyublinskaya, O.G., Khodorkovskii, M.A., Tomilin, A.N., and Tsimokha, A.S., Oncotarget, 2017, vol. 8, no. 60, pp. 102134–102149.
Sixt, S.U., Adamzik, M., Spyrka, D., Saul, B., Hakenbeck, J., Wohlschlaeger, J., Costabel, U., Kloss, A., Giesebrecht, J., Dahlmann, B., and Peters, J., Am. J. Respir. Crit. Care Med., 2009, vol. 179, no. 12, pp. 1098–1106.
Roth, G.A., Moser, B., Krenn, C., Roth-Walter, F., Hetz, H., Richter, S., Brunner, M., Jensen-Jarolim, E., Wolner, E., Hoetzenecker, K., Boltz-Nitulescu, G., and Ankersmit, H.J., Eur. J. Clin. Invest., 2005, vol. 35, pp. 399–403.
Lavabre-Bertrand, T., Henry, L., Carillo, S., Guiraud, I., Ouali, A., Dutaud, D., Aubry, L., Rossi, J.F., and Bureau, J.P., Cancer, 2001, vol. 92, pp. 2493–2500.
Stoebner, P.E., Lavabre-Bertrand, T., Henry, L., Guiraud, I., Carillo, S., Dandurand, M., Joujoux, J.M., Bureau, J.P., and Meunier, L., Br. J. Dermatol., 2005, vol. 152, pp. 948–953.
Kastle, M., Reega, S., Rogowska-Wrzesinska, A., and Grune, T., Free Radic. Biol. Med., 2012, vol. 53, pp. 1468–1477.
Brégégére, F., Sorokab, Y., Bismutha, J., Frigueta, B., and Milner, Y., Exp. Gerontol., 2003, vol. 38, pp. 619–629.
Martina, P., Liebl, M.P., and Hoppe, T., Am. J. Physiol. Cell Physiol., 2016, vol. 311, pp. 166–178.
Amm, I., Sommer, T., and Wolf, D.H., Biochim. Biophys. Acta, 2014, vol. 1843, pp. 182–196.
Lobanova, E.S., Finkelstein, S., Skiba, N.P., and Arshavsky, V.A., Proc. Natl. Acad. Sci. USA, 2013, vol. 110, no. 24, pp. 9986–9991.
Cenci, S., Oliva, L., Cerruti, F., Milan, E., Bianchi, G., Raule, M., Mezghrani, A., Pasqualetto, E., Sitia, R., and Cascio, P., J. Leukocyte Biol., 2012, vol. 92, pp. 921–931.
van der Lee, R., Lang, B., Kruse, K., Gsponer, J., Sánchez de Groot, N., Huynen, M.A., Matouschek, A., Fuxreiter, M., and Babu, M.M., Cell Rep., 2014, vol. 8, no. 6, pp. 1832–1844. doi 10.1016/j.celrep. 2014.07.055
Fabre, B., Lambour, T., Delobel, J., Amalric, F., Monsarrat, B., Burlet-Schiltz, O., and Bousquet-Dubouch, M.P., Mol. Cell Proteomics, 2013, vol. 12, no. 3, pp. 687–699. doi 10.1074/mcp.M112.023317
Brooks, P., Fuertes, G., Murray, R.Z., Bose, S., Knecht, E., Rechsteiner, M.C., Hendil, K.B., Tanaka, K., Dyson, J., and Rivett, J., Biochem J., 2000, vol. 346 (Pt 1), pp. 155–161.
Author information
Authors and Affiliations
Corresponding author
Additional information
Original Russian Text © O.A. Buneeva, A.E. Medvedev, 2018, published in Biomeditsinskaya Khimiya.
Rights and permissions
About this article
Cite this article
Buneeva, O.A., Medvedev, A.E. Ubiquitin-Independent Degradation of Proteins in Proteasomes. Biochem. Moscow Suppl. Ser. B 12, 203–219 (2018). https://doi.org/10.1134/S1990750818030022
Received:
Published:
Issue Date:
DOI: https://doi.org/10.1134/S1990750818030022