Log in

Lasiodiplodia species diversity associated with coconut leaf blight and stem-end rot in Northeastern Brazil

  • Published:
European Journal of Plant Pathology Aims and scope Submit manuscript

Abstract

Many abiotic and biotic factors can negatively affect the production and productivity of coconut crop** systems. The incidence of Lasiodiplodia species in crops can lead to significant economic losses due to the development of leaf blight and, consequently, both pre- and post-harvest stem-end rot of fruits. The management of these pathogens is complex, expensive and primarily depends, on the massive use of chemical products. In addition, decision making on effective control measures depends on the target pathogen. This work evaluated epidemiological aspects of Lasiodiplodia species, in association with the green dwarf coconut from Northeastern Brazil. The isolates were sampled in production areas located in the dry, sub-humid and humid climatic zones in the states of Pernambuco and Paraíba and were identified using multilocus phylogenetics with the tef1-α, ITS, tub2, and rpb2 regions. Lasiodiplodia theobromae was found in crops present in all three evaluated zones while L. pseudotheobromae was reported only in the dry zone of Pernambuco. All species were pathogenic to green dwarf coconut, with L. theobromae, L. pseudotheobromae and L. subglobosa being the most aggressive species. The recognition of L. theobromae, L. pseudotheobromae, L. brasiliensis and L. subglobosa, in coconut plants from Northeast Brazil, complements the scientific understanding about stem-end rot and leaf blight in coconut crop. Additionally, this study presents relevant information on the pathogenic characteristics of these species that can be used in future research into epidemiological factors, fungal resistance, phytosanitary management and genetic improvement.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5
Fig. 6

Similar content being viewed by others

Data availability

The gene sequences, which support the results of species recognition, were deposited in GenBank and the other raw data, related to the results presented in this study, may be made available to the editorial board for conference, if requested.

References

  • Alvares, C. A., Stape, J. L., Sentelhas, P. C., Gonçalves, J. L. M., & Sparovek, G. (2014). Köppen’s climate classification map for Brazil. Meteorologische Zeitschrift. https://doi.org/10.1127/0941-2948/2013/0507

    Article  Google Scholar 

  • Alves, A., Crous, P. W., Correia, A., & Phillips, A. J. L. (2008). Morphological and molecular data reveal cryptic speciation in Lasiodiplodiatheobromae. Fungal Diversity, 28, 1–13.

    Google Scholar 

  • Castellani, A. (1963). The “water cultivation” of pathogenic fungi. Annales De La Societe Belge De Medecine Tropical, 44, 217–220.

    Google Scholar 

  • Cavalcante, L. V. (2016). Reestruturação produtiva e a nova geogrefia do coco. Campo-Território, 11(25), 121–148.

    Article  Google Scholar 

  • Coutinho, I. B. L., Freire, F. C. O., Lima, C. S., Lima, J. S., Gonçalves, F. J. T., Machado, A. R., Silva, A. M. S., & Cardoso, J. E. (2017). Diversity of genus Lasiodiplodia associated with perennial tropical fruit plants in northeastern Brazil. Plant Pathology. https://doi.org/10.1111/ppa.12565

    Article  Google Scholar 

  • Cracraft, J. (1983). Species concepts and speciation analysis. Current Ornithology. https://doi.org/10.1007/978-1-4615-6781-3_6

    Article  Google Scholar 

  • Cruywagen, E. M., Slippers, B., Roux, J., & Wingfield, M. J. (2017). Phylogenetic species recognition and hybridization in Lasiodiplodia: A case study on species from baobabs. Fungal Biology. https://doi.org/10.1016/j.funbio.2016.07.014

    Article  PubMed  Google Scholar 

  • Dissanayake, A. J., Phillips, A. J. L., Li, X. H., & Hyde, K. D. (2016). Botryosphaeriaceae: Current status of genera and species. Mycosphere. https://doi.org/10.5943/mycosphere/si/1b/13

    Article  Google Scholar 

  • FAOStats - Food and Agriculture Organization of the United Nations. (2016). FAOStats. http://www.FAOStats.org/FAOStatsstat/en/#data/QC. Accessed: 10 january 2018.

  • Ferraz, L. G. B., Aragão, W. M., Silva, D. A., Nascimento, J. C. B. & Silva Filho, J. S. (2009a) Coqueiro ‘anão-verde’ (Cocos nucifera L) In: Instituto Agronômico de Pernambuco. Cultivares recomendadas pelo IPA para a Zona da Mata de Pernambuco (pp. 99–106). Recife: Instituto de Pesquisa Agropecuária de Pernambuco.

  • Ferraz, L. G. B., Silva, A. B., NunesFilho, J., Sousa, A. R., & Santos, V. F. (2009b). Sugar cane cake and mineral fertilizers on coconut (Cocos nucifera Linn) seedlings. R&D Journal, 25(2), 45–55.

    Google Scholar 

  • Glass, N., & Donaldson, G. (1995). Development of primer sets designed for use with the PCR to amplify conserved genes from filamentous ascomycetes. Applied and Environmental Microbiology, 61, 1323–1330.

    Article  CAS  Google Scholar 

  • Gontia-Mishra, I., Tripathi, N., & Tiwari, S. (2014). A simple and rapid DNA extraction protocol for filamentous fungi efficient for molecular studies. Indian Journal of Biotechnology, 13, 536–539.

    CAS  Google Scholar 

  • Halfeld-Vieira, B., & Nechet, K. L. (2005). Queda de Frutos em Coqueiro Causada por Lasiodiplodiatheobromae em Roraima. Fitopatologia Brasileira, 30(2), 203.

    Article  Google Scholar 

  • Holanda, J. S., Alves, M. C. S. & Chagas, M. C. M. (2008). Cultivo do coqueiro no Rio Grande do Norte. Natal: EMPARN. 27 p.

  • IBGE - Instituto Brasileiro De Geografia E Estatística (2018). https://sidra.ibge.gov.br/tabela/1613. Accessed: 20 january 2018.

  • Katoh, K., & Toh, H. (2013). MAFFT multiple sequence alignment software version 7: Improvements in performance and usability. Molecular Biology and Evolution. https://doi.org/10.1093/molbev/mst010

    Article  PubMed  PubMed Central  Google Scholar 

  • Köppen, W. P. (1931) Grundriss der Klimakunde 2nd Berlin Walter de Gruyter

  • Lima, J. S., Moreira, R. C., Cardoso, J. E., Martins, M. V. V., & Viana, F. M. P. (2013). Cultural, morphological and pathogenic characterization of Lasiodiplodia theobromae associated with tropical fruit plants. Summa Phytopathologica. https://doi.org/10.1590/S0100-54052013000200001

    Article  Google Scholar 

  • Machado, A. R., Pinho, D. B., & Pereira, O. L. (2014). Phylogeny, identification and pathogenicity of the Botryosphaeriaceae associated with colas and root of the biofuel plant Jatropha curcas in Brazil, with a description of new species of Lasiodiplodia. Fungal Diversity. https://doi.org/10.1007/s13225-013-0274-1

    Article  Google Scholar 

  • MAPA - Ministério da Agricultura, Pecuária e Abastecimento. (2021). Agrofit—Sistema de Agrotóxicos Fitossanitários from MAPA website. Brasil: http://agrofit.agricultura.gov.br/agrofit_cons/principal_agrofit_cons . Accessed: 10 april 2021.

  • Marques, M. W., Lima, N. B., Morais, M. A., Jr., Barbosa, M. A. G., Souza, M. O., Michereff, S. J., Phillips, A. J. L., & Câmara, M. P. S. (2013). Species of Lasiodiplodia associated with mango in Brazil. Fungal Diversity. https://doi.org/10.1007/s13225-013-0231-z

    Article  Google Scholar 

  • Martins, C. R. & Jesus Júnior, L. A. (2011). Evolução da produção de coco no Brasil e o comércio internacional: panorama 2010. Aracaju: Embrapa Tabuleiros Costeiros

  • Monteiro, C. M., Caron, E. S., Silveira, S. F., & Almeida, Al. (2013). Control of foliar diseases by the axillary application of systemic fungicides in Brazilian coconut palms. Crop Protection. https://doi.org/10.1016/j.cropro.2013.05.013

    Article  Google Scholar 

  • Netto, M. S. B., Assunção, I. P., Lima, G. S. A., Marques, M. W., Lima, W. G., Monteiro, J. H. A., Balbino, W. Q., Michereff, S. J., Phillips, A. J. L., & Câmara, M. P. S. (2014). Species of Lasiodiplodia associated with papaya stem-end rot in Brazil. Fungal Diversity. https://doi.org/10.1007/s13225-014-0279-4

    Article  Google Scholar 

  • Netto, M. S. B., Lima, W. G., Correia, K. C.; Silva, C. F. B.; Thon, M.; Martins, R. B.; Miller, R. N. G.; Michereff, S. J.& Câmara, M. P. S. (2017). Analysis of phylogeny, distribution, and pathogenicity of Botryosphaeriaceae species associated with gummosis of Anacardium in Brazil, with a new species of Lasiodiplodia. Fungal Biology, https://www.crem.fct.unl.pt/botryosphaeria_site

  • Nylander, J. A. A. (2004). MrModeltest v2. Uppsala University.

    Google Scholar 

  • Osorio, J. A., Crous, C. J., De Beer, Z. W., Wingfield, M. J., & Roux, J. (2017). Endophytic Botryosphaeriaceae, including five new species, associated with mangrove trees in South Africa. Fungal Biology. https://doi.org/10.1016/j.funbio.2016.09.004

    Article  PubMed  Google Scholar 

  • Pereira, A. L., Silva, G. S., & Ribeiro, V. Q. (2006). Caracterização fisiológica, cultural e patogênica de diferentes isolados de Lasiodiplodia theobrome. Fitopatologia Brasileira. https://doi.org/10.1590/S0100-41582006000600006

    Article  Google Scholar 

  • Pereira, A. V. S., Martins, R. B., Michereff, S. J., Silva, M. B., & Câmara, M. P. S. (2012). Sensitivity of Lasiodiplodia theobromae from Brazilian papaya orchards to MBC and DMI fungicides. European Journal Plant Pathology. https://doi.org/10.1007/s10658-011-9891-2

    Article  Google Scholar 

  • Phillips, A. J. L., Alves, A., Abdollahzadeh, J., Slippers, B., Wingfield, M. J., Groenewald, J. Z., & Crous, P. W. (2013). The Botryosphaeriaceae: Genera and species known from culture. Studies in Mycology. https://doi.org/10.3114/sim0021

    Article  PubMed  PubMed Central  Google Scholar 

  • Phillips, A. J. L., Oudemans, P. V., Correia, A., & Alves, A. (2006). Characterization and epitypification of Botryosphaeria corticis, the cause of blueberry cane canker. Fungal Diversity, 21, 141–155.

    Google Scholar 

  • Poletto, T., GonzattoMaciel, C., Muniz, M., Blume, E., & Brioso, P. (2016). First report of stem canker caused by Lasiodiplodiasubglobosaon Caryaillinoinensisin Brazil. Plant Diseases. https://doi.org/10.1094/PDIS-08-15-0948-PDN

    Article  Google Scholar 

  • Prades, A., Salum, U. N., & Pioch, D. (2016). New era for the coconut sector What prospects for research? Oilseeds and Fats, OCL. https://doi.org/10.1051/ocl/2016048

    Article  Google Scholar 

  • Rodrıguez-Galvez, E., Guerrero, P., Barradas, C., Crous, P. W., & Alves, A. (2017). Phylogeny and pathogenicity of Lasiodiplodia species associated with dieback of mango in Peru. Fungal Biology. https://doi.org/10.1016/j.funbio.2016.06.004

    Article  PubMed  Google Scholar 

  • Ronquist, F., Teslenko, M., van der Mark, P., Ayres, D. L., Darling, A., Höhna, S., Larget, B., Liu, L., Suchard, M. A., & Huelsenbeck, J. P. (2012). MrBayes v. 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology, 61, 539–542.

    Article  Google Scholar 

  • Rosado, A. W. C. R., Machado, A. R., Freire, F. C., & Pereira, O. L. (2016). Phylogeny, identification and pathogenicity of Lasiodiplodiaassociated with postharvest stem-end rot of coconut in Brazil. Plant Diseases. https://doi.org/10.1094/PDIS-03-15-0242-RE

    Article  Google Scholar 

  • Rozas, J., Sánchez-Delbarrio, J. C., Messeguer, X., & Rozas, R. (2003). DnaSP. DNA polymorphism analyses by the coalescent and other methods: Bioinformatics. https://doi.org/10.1093/bioinformatics/btg359

    Book  Google Scholar 

  • Santos, P. H. D., Carvalho, B. M., Aredes, F. A. S., Mussi-Dias, V., Pinho, D. B., Pereira, M. G., & Silveira, S. F. (2020). Is Lasiodiplodia theobromae the only species that causes leaf blight disease in Brazilian coconut palms? Tropical Plant Pathology. https://doi.org/10.1007/s40858-020-00344-x

    Article  Google Scholar 

  • Sela, I., Ashkenazy, H., Katoh, K., & Pupko, T. (2015). GUIDANCE2: Accurate detection of unreliable alignment regions accounting for the uncertainty of multiple parameters. Nucleic Acids Research. https://doi.org/10.1093/nar/gkv318

    Article  PubMed  PubMed Central  Google Scholar 

  • Silva, V. P. R. (2004). On climate variability in Northeast of Brazil. Journal of Arid Environments. https://doi.org/10.1016/j.jaridenv.2003.12.002

    Article  Google Scholar 

  • Silva, J. M., Talamini, V., Ramos, S. R. R., Ferreira, J. M. S., Santos, J. M. S. M., & Fernandes, M. F. (2017). Evaluation of dwarf coconut (Cocos nucifera L) germplasm to the damage intensity caused by foliar diseases. Australian Journal of Crop Science. https://doi.org/10.21475/ajcs.17.11.10.pne748

    Article  Google Scholar 

  • Staden, R., Beal, K. F. & Bonfield, J. K. (1998). The Staden package, 1998. In:Misener, S. & Krawetz, S. A. (Eds), Bioinformatics methods and protocols (pp. 115–130). Humana, New York.

  • Stamatakis, A. (2014). RAxML version 8: a tool for phylogenetic analysis and postanalysis of large Phylogenies. Bioinformatics, 30, 1312–1313.

    Article  CAS  Google Scholar 

  • Talamini, V., Ferreira, J. M. S. & Ramos, S. R. R. (2013). Incidência e severidade da queima das folhas em cultivares de coqueiro em Pernambuco. Aracaju: Embrapa Tabuleiros Costeiros.

  • Taylor, J. W., Jacobson, D. J., Kroken, S., Kasuga, T., Geiser, D. M., Hibbett, D. S., & Fisher, M. C. (2000). Phylogenetic species recognition and species concepts in fungi. Fungal Genetics and Biology. https://doi.org/10.1006/fgbi.2000.1228

    Article  PubMed  Google Scholar 

  • Úrbez-Torres, J. R., Castro-Medina, F., Mohali, S. R., & Gubler, W. D. (2016). Botryosphaeriaceae Species Associated With Cankers and Dieback Symptoms of Acacia mangium and Pinus caribaea var hondurensis in Venezuela. Pant Disease. https://doi.org/10.1094/PDIS-05-16-0612-RE

    Article  Google Scholar 

  • Vaidya, G., Lohman, D. J., & Meier, R. (2011). SequenceMatrix: concatenation software for the fast assembly of multigene datasets with character set and codon information. Cladistics, 27, 171–180.

    Article  Google Scholar 

  • Viana, F. M. P., Freire, F. C. O., Barguil, B. M., Alves, R. E., Santos, A. A., Cardoso, J. E., & Vidal, J. C. (2002). Podridão basal pós-colheita do coco verde no estado do Ceará. Fitopatologia Brasileira. https://doi.org/10.1590/S0100-41582002000500020

    Article  Google Scholar 

  • Wang, Y., Lin, S., Zhao, L., Sun, X., He, W., Zhang, Y., & Dai, Y. (2019). Lasiodiplodia spp associated with Aquilaria crassna in Laos. Mycol Progress. https://doi.org/10.1007/s11557-019-01481-7

    Article  Google Scholar 

  • Warwick, D. R. N. & Passos, E. E. M. (2009) Outbreak of stem bleeding coconuts caused by Thielaviopsisparadoxa in Sergipe, Brazil. Tropical Plant Pathology Doi: https://doi.org/10.1590/S1982-56762009000300007

  • White, T. J., Bruns, T., Lee, S., & Taylor, J. (1990). Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In A. M. Innibs, D. H. Gelfard, J. J. Snindky, & T. J. White (Eds.), PCR Protocols: A Guide to Methods and Applications (pp. 315–322). Academic Press.

    Google Scholar 

  • Yang, T., Groenewald, J. Z., Cheewangkoon, R., Jami, F., Abdollahzadeh, J., Lombard, L., & Crous, P. W. (2017). Families, genera, and species of Botryosphaeriales. Fungal Biology. https://doi.org/10.1016/j.funbio.2016.11.001

    Article  PubMed  Google Scholar 

Download references

Acknowledgements

The authors thank the financial support offered by National Council of Technological and Scientific Development (CNPq). We also thank José Carlos Barbosa Nascimento; Itapirema Experimental Station of the Agronomic Institute of Pernambuco; we also thank to Phytobacteriology Laboratory of the Federal Rural University of Pernambuco – LAFBAC and to Laboratory of Bioinformatics and Evolutionary Biology, Federal University of Pernambuco – UFPE by support during field collections, availability of plant material used in the experiments, availability of physical structure and genetic analysis services, respectively.

Funding

No funding was received for conducting this study. All costs were subsidized by the authors themselves. During the research period, the main author received the aid of a doctoral scholarship from the Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq).

Author information

Authors and Affiliations

Authors

Corresponding authors

Correspondence to Iwanne Lima Coelho or Delson Laranjeira.

Ethics declarations

Conflict of interest

The authors declare that they have no conflict of interest.

Ethical approval

The authors declare that ethical standards have been followed and that no human participants or animals were involved in this research.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Coelho, I.L., de Assis, T.C., Ferraz, L.G.B. et al. Lasiodiplodia species diversity associated with coconut leaf blight and stem-end rot in Northeastern Brazil. Eur J Plant Pathol 162, 45–61 (2022). https://doi.org/10.1007/s10658-021-02383-9

Download citation

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10658-021-02383-9

Keywords

Navigation