Introduction

Cholangiocyte differentiation is a distinctive feature seen in cholangiocarcinoma (CHOL), an epithelial cancer that originates within the bile ducts (de Groen et al. 1999). CHOL ranks as the second most frequent primary hepatic cancer and epidemiological studies have indicated a growing disease incidence in the West (Welzel et al. 2006). Advanced CHOL has a dismal prognosis, with a median survival of only 24 months (Farley et al. 1995). Unfortunately, the majority of patients receive a late-stage diagnosis for which no effective cure is available. Current treatment approaches are largely limited to symptom relief, extending survival, and enhancing the quality of life. Therefore, there is an urgent need for more effective methods to identify and treat CHOL.

Dermatopontin (DPT), a non-collagenous extracellular matrix (ECM) protein initially identified in the dermis, has been documented in various tissues, including the bile duct (Okamoto and Fujiwara 2006). Current evidence suggests that DPT regulates the ECM architecture and modifies the interaction between decorin and transforming growth factor-beta (TGF-β) (MacBeath et al. 1993; Takeda et al. 2002). Furthermore, DPT shows strong associations with cancer. For example, it has been observed that DPT exhibits a potent ability to inhibit the invasion and migration of cancer cells in liver and oral cancers (Fu et al. Full size image

DPT is a prognostic CHOL biomarker

To identify specific targets affecting CHOL prognosis, the 15 prognostic-related DEGs were used to construct a model through a lasso regression algorithm, calculating regression coefficients. Nine genes were identified as the most valuable candidates affecting CHOL patients’ prognosis (Fig. 2A–B). Subsequently, Kaplan–Meier analysis demonstrated significant correlations between the expression level of these 9 candidate genes in CHOL and survival outcomes, and all correlations were statistically significant when comparing high and low levels of gene expression (Fig. 2D). ROC curve analysis confirmed the model's diagnostic specificity and sensitivity, with area under the ROC curve values for MIN and SE of 0.952 and 0.879, respectively (Fig. 2C). Additionally, a Cox-forest model was performed, revealing that age, gender, BUB1B, CST1, CFHR3, and GPAM were associated with an increased risk for CHOL survival (hazard ratios [HRs] > 1), while stage, PAH, DPT, FCN1, TROAP, and MT1F were protective factors (HRs < 1) (Fig. 2E). After sorting the TCGA samples into high- and low-risk groups based on the most appropriate cutoff value, Kaplan–Meier analysis showed that the low-risk group had a significantly better prognosis (p < 1 × 10–4) (Fig. 2F and Supplementary Fig. 2A). Furthermore, a heatmap was generated to visualize differences in the expression of several target genes between the high- and low-risk groups (Fig. 2G). Immune analysis of the risk model revealed significantly higher stromal and immune scores in the low-risk group (Supplementary Fig. 2B) and higher infiltration levels of CD8+ T cells, CD4+ T cells, and other immune cells in the low-risk group (Supplementary Fig. 2C). The AUCs for 1-, 2-, and 4-year OS in the TCGA dataset were 0.76, 0.77, and 0.87, respectively, indicating the model's clinical significance (Fig. 2H). Finally, the expression levels of these 9 genes were compared in normal bile duct and CHOL using GSE26566, GSE45001, and TCGA datasets. The findings indicated that DPT exhibited the most significant difference (Fig. 2I–K). Based on the literature (Fu et al. 2014; Zavvos et al. 2017), DPT was defined as the most valuable biomarker for CHOL prognosis.

Fig. 2
figure 2

DPT is a favorable biomarker for the prognostic prediction of CHOL. A Cross-validation for tuning parameter screening in the LASSO regression model. B Coefficient profiles in the LASSO regression model. C ROC curve verified the validity of the model. D Kaplan–Meier analysis verified the clinical prognostic effect of the target genes. E Constructing a cox-forest model to predict overall survival risk and protective factors in patients with CHOL. F The prognosis values of the risk model in TCGA-CHOL database. G Distribution of risk score, survival time, and candidate genes in high- and low-risk groups. H ROC curve was used to demonstrate the survival rate at 1, 3, and 4 years, respectively. IK The expression of these nine genes was displayed with GEO (GSE26566 and GSE45001) and TCGA datasets (*, p < 0.05; **, p < 0.01; ***, p < 0.001; ****, p < 0.0001)

DPT potentially improves CHOL patients’ prognosis by elevating immune infiltration levels

To explore the biological function of DPT, TCGA-CHOL samples were divided into high- and low-expression groups based on the median DPT expression, and the DEGs were visualized in a heatmap (Fig. 3A). These DEGs were subjected to GO analysis, which revealed a strong association between DPT and leukocyte-mediated immunity, lymphocyte-mediated immunity, and other immune-related functions (Fig. 3B). KEGG analysis indicated that the top 5 signaling pathways enriched in the high-expression of DPT were viral protein interaction with cytokines and cytokine receptors, cytokines-cytokine receptors interaction, the chemokine signaling pathway, cell adhesion molecules, and the intestinal immune network for IgA production (Fig. 3C). Correlation analysis using the 'corrplot' package and Timer 2.0 showed that most types of immune cells, especially CD8+ T cells, CD4+ T cells, and M1 macrophages, were strongly positively correlated with DPT expression (Fig. 3D and Supplementary Fig. 3A–B). Furthermore, the relationship between DPT expression and immune/stromal scores was assessed. The results indicated that DPT expression was positively correlated with both scores, suggesting that DPT is closely related to immune cells and stromal cells in the TME (Fig. 3E). Higher immune and stromal scores were associated with better prognosis (Fig. 3F). Collectively, these findings suggested that DPT is an immune-related marker and may improve CHOL patient prognosis by enhancing immune cell infiltration.

Fig. 3
figure 3

DPT can enhance the prognosis of CHOL patients by increasing immune infiltration. A Heatmap shows the DEGs of DPT low- and High-expression groups using TCGA-CHOL Dataset. BC GO and KEGG analysis of DPT-related DEGs. D Analysis of the correlation between DPT and the level of immune cell infiltration. E Assessment of the associations between DPT and scores (stromal score, immune score, and estimate score) with the ESTIMATE algorithm. F Investigation of the relationship between scores (stromal score, immune score, and estimate score) and CHOL patients’ prognosis

DPT is closely related to the immune regulatory molecules

TISIDB analysis revealed the association between DPT and immunoinhibitors, immunostimulators, and Major Histocompatibility Complex (MHCs) in the TCGA dataset. Our results indicated a positive correlation between DPT expression in CHOL and most immunoinhibitors. The top 5 positively correlated immunoinhibitors were CD96 (rho = 0.632, p = 5.18e-05), BTLA (rho = 0.614, p = 9.34 × 10–5), TIGIT (rho = 0.588, p = 2.16 × 10–4), IDO1 (rho = 0.546, p = 7 × 10–4), and PDCD1LG2 (rho = 0.509, p = 1.74 × 10–3) (Fig. 4A–B). We also used a string diagram to visualize the interaction between DPT and classical immune checkpoint molecules such as PD-1, PD-L2, and CTLA4 (Supplementary Fig. 4A). Interestingly, our findings also revealed a strong positive correlation between DPT and several immunostimulators, including TNFRSF17 (rho = 0.706, p = 3.32 × 10–6), TNFRSF13B (rho = 0.642, p = 3.72 × 10–5), CD40LG (rho = 0.636, p = 4.61 × 10–5), TMEM173 (rho = 0.594, p = 1.78 × 10–4), and CD48 (rho = 0.592, p = 1.93 × 10–4) (Fig. 4C–D). Furthermore, most MHC molecules exhibited a significant positive correlation with DPT expression in CHOL samples, with the top 5 being HLA-DOB (rho = 0.666, p = 1.54 × 10–5), HLA-DRA (rho = 0.477, p = 3.61 × 10–3), HLA-DMA (rho = 0.476, p = 3.67 × 10–3), HLA-DRB1 (rho = 0.45, p = 6.35 × 10–3), and HLA-DOA1 (rho = 0.447, p = 6.79 × 10–3) (Fig. 4E–F). To enhance the robustness of the results, we also investigated the correlation between DPT and immunomodulators in the GSE26566 and GSE45001 datasets, confirming the positive correlation of DPT with the expression of most immunoinhibitors, immunostimulators, and MHCs, consistent with TCGA dataset analysis (Supplementary Fig. 4B–G). In summary, these results suggest that DPT plays a pivotal role in immune regulation in CHOL.

Fig. 4
figure 4

Relationship between DPT and immunoinhibitors, immunostimulators, and MHC molecules. A–B TISIDB was used to investigate the correlation between DPT expression and immunoinhibitors in CHOL. C–D TISIDB was used to investigate the correlation between DPT expression and immunostimulators in CHOL. E–F TISIDB was used to investigate the correlation between DPT expression and MHC molecules in CHOL

DPT can significantly improve the response and survival of patients to anti-PD-1/PD-L1 immunotherapy

We analyzed three research cohorts to investigate the association between DPT expression and sensitivity to specific immunotherapy, which included the Lauss cohort 2017, Cho cohort 2020, and the VanAllen cohort 2015. The results showed that high DPT expression was significantly associated with a positive response to anti-PD-1/PD-L1 therapy. Notably, the response sensitivity to CAR-T therapy in the Lauss cohort 2017 and anti-CTLA-4 therapy in the VanAllen cohort 2015 did not depend on DPT expression (Fig. 5A). The ROC curve further demonstrated the diagnostic sensitivity and efficacy of anti-PD-1/PD-L1 therapy in the Cho cohort 2020 (AUC = 1.00), while CAR-T therapy and anti-CTLA-4 therapy had lower diagnostic sensitivity and specificity with AUC values of 0.576 and 0.670, respectively (Fig. 5B). Kaplan–Meier survival curves for OS and PFS indicated that anti-PD-1/PD-L1 therapy in patients with high DPT expression significantly improved survival outcomes (OS: p = 4.8 × 10–4; PFS: p = 4.8 × 10–4). In contrast, CAR-T therapy (OS: p = 0.26; PFS: p = 0.17) and anti-CTLA-4 therapy (OS: p = 0.044; PFS: p = 0.098) had no significant impact (Fig. 5C–D). In conclusion, these findings suggest that anti-PD-1/PD-L1 therapy is more effective in patients with high DPT expression.

Fig. 5
figure 5

DPT may significantly improve patient response and survival to anti-PD-1/PD-L1 Immunotherapy. A The response effect in different therapeutic target study groups varied with the expression level of DPT. B The diagnostic specificity and sensitivity of different therapeutic targets for CHOL. C–D Impact of different immunotherapies on survival

DPT mutation landscape and correlations with clinical subgroups in CHOL

CHOL is characterized by high heterogeneity and genetic variability (Wang and Du 2021; Yamaji-Hasegawa et al. 2022). We next investigated the relationship between DPT expression and somatic mutations using TCGA-CHOL data. As shown in Fig. 6A, the gene mutation rate in the high-DPT group was lower than in the low-DPT group, with missense mutations being the most prevalent. Additionally, DPT genomic alterations in CHOL were further analyzed using the cBioPortal database, which revealed that 17% of CHOL patients (6 altered and 30 unaltered) had DPT genomic alterations, mainly in the form of amplifications (Fig. 6B–C). This variation in DPT genomic status may contribute to differences in tumor grade and prognosis among CHOL patients. We also utilized the UALCAN database to explore the relationship between DPT expression and tumor grade, stage, and lymph node metastasis in CHOL and LIHC. The results indicated that DPT expression in CHOL and LIHC gradually decreased with increasing tumor grade, stage, and lymph node metastasis stage (Fig. 6D–F). However, this trend was not statistically significant in CHOL but showed a highly significant correlation with LIHC (Fig. 6G–I). Taken together, DPT expression is inversely correlated with somatic mutations as well as tumor grade, stage, and lymph node metastatic grade in both CHOL and LIHC.

Fig. 6
figure 6

The landscape of DPT mutations and its links to clinical subgroups in CHOL. A camoip database showed the gene mutation frequency in the high- and low-DPT group. B Exhibition of mutation rate and major mutation types of DPT in CHOL using cBioPortal database. D–F Using UALAN website to show the relationship between DPT and tumor stage, grade, and lymph node grade of CHOL. G–I Using UALCAN website to show the relationship between DPT and tumor stage, grade, and lymph node grade of LIHC

CCL19 as a potential target for DPT-Mediated Enhancement of Immune Cell Infiltration in CHOL

Given the correlations between DPT and immune infiltration and their downstream signal pathways, including the chemokine signaling pathway and cell adhesion molecules, we explored the relationships between DPT and chemokines and adhesion molecules. Our findings revealed significant changes in the expression levels of several chemokines and adhesion molecules between the high- and low-DPT groups in the TCGA and GSE26566 CHOL datasets (Fig. 7A–B and Supplementary Fig. 5A–B). Subsequently, we further investigated DPT-correlated genes using the cBioPortal website, revealing the top 10 DPT-correlated genes, along with their cytobands, Spearman's correlation coefficients, p values, and q values (Fig. 7C). Among the top 10 DPT-correlated genes, CCL19 was the only chemokine, and SELP was the only adhesion molecule. The relationships between DPT and CCL19 (Spearman = 0.86; p = 3.04 × 10–11) and SELP (Spearman = 0.80; p = 5.50 × 10–9) were visualized in scatter plots (Fig. 7D–E). Additionally, we confirmed the relationship between DPT and CCL19 and SELP using the GeneMANIA online database (Fig. 7F and Supplementary Fig. 5C). Previous studies have shown that CCL19 is primarily secreted by CAFs and macrophages, while SELP is mainly produced by endothelial cells (Cheng et al. 2018; Xuan et al. 2015; Yeini and Satchi-Fainaro 2022). Using Timer2.0, we found that DPT and CCL19 were both positively correlated with CAFs and macrophages (Fig. 7G–H). DPT and SELP were both positively correlated with endothelial cells (Supplementary Fig. 5D–E). However, since this study represents a preliminary exploration of the mechanisms underlying the low level of immune cell infiltration in the TME of CHOL. Meanwhile, the correlation of DPT with the chemokine signaling pathway is stronger than with the cell adhesion molecule pathway shown in Fi. 3C. Consequently, only the target (CCL19) of the chemokine signaling pathway was selected for further verification. Furthermore, we detected the expression level of CCL19 in CHOL using the GSE26566, GSE45001, and TCGA-CHOL datasets, and all findings indicated that CCL19 is lowly expressed in CHOL tissues compared with normal tissues (Supplementary Fig. 5F). At the same time, in CHOL patients, the high-CCL19 group showed better prognosis than the low-CCL19 group (Supplementary Fig. 5G). In summary, these results suggest that DPT may promote immune cell infiltration by increasing the production of downstream CCL19 and SELP.

Fig. 7
figure 7

DPT may target CCL19 to promote immune cell infiltration in CHOL. A–B The intersection of DPT-related DEGs and chemokine genes in GSE26566 and TCGA datasets. C Exhibition of the top 10 genes most associated with DPT in CHOL using cBioPortal database. D–F Analysis of the correlation between DPT and chemokine CCL19, adhesion molecule SELP (Green represents chemokines). G Exploration of the relationship between DPT and macrophages, CAFs using Timer2.0 database. H Exploration of the relationship between CCL19 and macrophages, CAFs using Timer2.0 database

Single-cell analysis of CCL19 expression in various cells of CHOL TME

To determine the specific locations where CCL19, a potential downstream target of DPT, is synthesized in the CHOL TME, we analyzed the 10 × Genomics single-cell sequencing dataset GSE138709 obtained from the GEO database. Initially, all cells in the CHOL TME were categorized into two types: normal and tumor (Fig. 8A). Principal component analysis and t-distributed stochastic neighbor embedding (tSNE) were then applied for dimensionality reduction and clustering, resulting in the identification of 18 clusters (Fig. 8B). Based on classical markers for various cell types, these 18 clusters were annotated into eight cell groups: cholangiocytes (marked with TM4SF4, ANXA4), malignant cells (EPCAM, KRT19, and KRT7), macrophages (marked with CD14), hepatocytes (marked with APOC3, FABP1, and APOA1), endothelial cells (marked with ENG and VWF), T cells (marked with CD2, CD3D, and CD3E), B cells (marked with MS4A1 and CD79A), and fibroblasts (marked with ACTA2 and COL1A2) (Fig. 8C). We identified the DEGs for each cell group using the Wilcoxon rank-sum test and visualized the top 5 DEGs for each group in a heatmap (Fig. 8D–E). Finally, the expression level of the chemokine CCL19 was visualized in a bubble plot. CCL19 was predominantly expressed by CAFs and macrophages in the TME (Fig. 8F).

Fig. 8
figure 8

Single-cell analysis of CCL19 expression in different cells of CHOL TME. A–C The cells of CHOL were divided into 8 cell groups via principal component analysis and t-distributed stochastic neighbor embedding (tSNE). D The markers of these 8 cell groups and the clusters in which they are expressed. E Heatmap was used to mark the top 5 DEGs of each cell group. F The synthetic position of DPT in the CHOL TME was demonstrated using a bubble diagram

DPT and CCL19 are lowly expressed in CHOL clinical tissues

To confirm the robustness of the results obtained from database analysis, we collected paired CHOL specimens for further investigation. Initially, we conducted IHC analysis to assess the expression of DPT in CHOL tissues, revealing a significant decrease in DPT protein expression compared to normal bile duct epithelial tissues (Fig. 9A). Furthermore, we performed qPCR and WB to measure the levels of DPT mRNA and protein, and the results exhibited a consistent trend with the IHC analysis (Fig. 9B–C). Likewise, we observed a higher expression of CCL19 in normal bile duct epithelial tissues compared to CHOL tissues (Fig. 9D). At the cellular level, we cultured several cell lines, including normal bile duct cells and CHOL cells, for the detection of DPT gene and protein. Similarly, DPT gene and protein expression were significantly higher in normal bile duct cells compared to CHOL cell lines (Fig. 9E–F). Finally, we selected various CHOL cell lines, such as QBC939, HUCCT1, and RBE, to create DPT-overexpressed cell models for further analysis (Fig. 9G). In conclusion, DPT was significantly downregulated in CHOL tissues and cell lines, with low expression of CCL19 in these tissues. These findings provide the basis for further exploring the relationship between DPT and CCL19.

Fig. 9
figure 9

DPT and CCL19 is lowly expressed in CHOL cells and clinical tissues. A Detection of the DPT expression in normal bile duct epithelial and CHOL via immunohistochemistry. B–C Through qPCR and WB analysis, the expression of DPT mRNA and protein in normal bile duct epithelial and CHOL specimens was detected. D qPCR was performed to assess the expression of CCL19 mRNA in CHOL tissues. E–F mRNA and protein level of DPT in normal biliary cells (HIBEC) and various CHOL cell lines (QBC939, MZ, SK, RBE, HUCCT1, and HUH28). G Construction of CHOL cell lines overexpressing DPT by lentivirus transfection

CHOL cells derived DPT promotes the secretion of CCL19 in macrophages to trigger immune infiltration

To further validate that DPT can elevate the expression of the chemokine CCL19, we analyzed the DPT protein sequence using the SignalP-5.0 website. Our analysis revealed the presence of a signal peptide at the beginning of the DPT protein, with the cleavage site between positions 18 and 19: AWG-QY (probability: 0.9329). This suggests that DPT may be secreted into the TME as an exocrine protein (Fig. 10A). Additionally, we compared the DPT signal peptide sequences in various species, including humans, mouse, rats, dogs, chickens, monkeys, and chimpanzees, and found that the sequences near the cleavage site were highly conserved (Fig. 10B). Furthermore, immunofluorescence analysis of different CHOL wild-type and DPT-overexpressing cell lines showed that DPT is primarily localized in the cytoplasm rather than the nucleus (Fig. 10C). Based on this previous research and the evidence from immunofluorescence and bioinformatics analysis, we speculate that DPT functions as an exocrine protein in the CHOL TME (Okamoto and Fujiwara 2006; Takeuchi et al. 2006). Next, we investigated whether DPT secreted by CHOL cells can affect two common cell types in the TME, namely, CAFs and macrophages, to enhance CCL19 expression. ELISA and co-culture experiments indicated that macrophages, co-cultured with conditioned media from DPT-overexpressing CHOL cells, exhibited significantly higher CCL19 secretion compared to the control group (Fig. 10D). However, no significant changes were observed in the CAFs co-culture system (Fig. 10E). In summary, these findings demonstrate that CHOL cells overexpressing DPT can promote the secretion of the chemokine CCL19 in macrophages, resulting in increased immune cell infiltration in the TME, explaining the beneficial effects of DPT in improving CHOL prognosis.

Fig. 10
figure 10

DPT overexpression in CHOL cells stimulates macrophages to produce CCL19. A The signal peptide structure in front of the DPT protein sequence was found using the SignalP-5.0 website. B The sequence near the cleavage site of DPT signal peptide was consistent in various species using MegAlign analysis (human, mouse, rat, dog, chicken, monkey, and chimpanzee). C Confocal microscopy exhibited the localization of DPT in various CHOL cell lines. D–E Through ELISA assay, the effect of exocrine DPT on the secretion of CCL19 by macrophages but CAFs was detected