A\(\nu \)-Net: Automatic Detection and Segmentation of Aneurysm

  • Conference paper
  • First Online:
Cerebral Aneurysm Detection and Analysis (CADA 2020)

Part of the book series: Lecture Notes in Computer Science ((LNIP,volume 12643))

Included in the following conference series:

  • 640 Accesses

Abstract

We propose an automatic solution for the CADA 2020 challenge to detect aneurysm from Digital Subtraction Angiography (DSA) images. Our method relies on 3D U-net as the backbone and heavy data augmentation with a carefully chosen loss function. We were able to generalize well using our solution (despite training on a small dataset) that is demonstrated through accurate detection and segmentation on the test data.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Subscribe and save

Springer+ Basic
EUR 32.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or Ebook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 39.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free ship** worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Similar content being viewed by others

References

  1. Çiçek, Ö., Abdulkadir, A., Lienkamp, S.S., Brox, T., Ronneberger, O.: 3D U-Net: learning dense volumetric segmentation from sparse annotation. In: Ourselin, S., Joskowicz, L., Sabuncu, M.R., Unal, G., Wells, W. (eds.) MICCAI 2016. LNCS, vol. 9901, pp. 424–432. Springer, Cham (2016). https://doi.org/10.1007/978-3-319-46723-8_49

    Chapter  Google Scholar 

  2. Duan, H., Huang, Y., Liu, L., Dai, H., Chen, L., Zhou, L.: Automatic detection on intracranial aneurysm from digital subtraction angiography with cascade convolutional neural networks. Biomed. Eng. Online 18(1), 110 (2019)

    Article  Google Scholar 

  3. Gerl, S., et al.: A distance-based loss for smooth and continuous skin layer segmentation in optoacoustic images. In: Martel, A.L., et al. (eds.) MICCAI 2020. LNCS, vol. 12266, pp. 309–319. Springer, Cham (2020). https://doi.org/10.1007/978-3-030-59725-2_30

    Chapter  Google Scholar 

  4. Hentschke, C.M., Beuing, O., Paukisch, H., Scherlach, C., Skalej, M., Tönnies, K.D.: A system to detect cerebral aneurysms in multimodality angiographic data sets. Med. Phys. 41(9), 091904 (2014)

    Google Scholar 

  5. Li, H., et al.: DiamondGAN: unified multi-modal generative adversarial networks for MRI sequences synthesis. In: Shen, D., et al. (eds.) MICCAI 2019. LNCS, vol. 11767, pp. 795–803. Springer, Cham (2019). https://doi.org/10.1007/978-3-030-32251-9_87

    Chapter  Google Scholar 

  6. Nakao, T., et al.: Deep neural network-based computer-assisted detection of cerebral aneurysms in MR angiography. J. Magn. Reson. Imaging 47(4), 948–953 (2018)

    Article  Google Scholar 

  7. Navarro, F., Sekuboyina, A., Waldmannstetter, D., Peeken, J.C., Combs, S.E., Menze, B.H.: Deep reinforcement learning for organ localization in CT. ar**v preprint ar**v:2005.04974 (2020)

  8. Navarro, F., et al.: Shape-aware complementary-task learning for multi-organ segmentation. In: Suk, H.-I., Liu, M., Yan, P., Lian, C. (eds.) MLMI 2019. LNCS, vol. 11861, pp. 620–627. Springer, Cham (2019). https://doi.org/10.1007/978-3-030-32692-0_71

    Chapter  Google Scholar 

  9. Paetzold, J.C., et al.: Transfer learning from synthetic data reduces need for labels to segment brain vasculature and neural pathways in 3D. In: International Conference on Medical Imaging with Deep Learning-Extended Abstract Track (2019)

    Google Scholar 

  10. Qasim, A.B., et al.: Red-GAN: attacking class imbalance via conditioned generation. Yet another medical imaging perspective. In: Medical Imaging with Deep Learning. PMLR (2020)

    Google Scholar 

  11. Shit, S., et al.: clDice–a topology-preserving loss function for tubular structure segmentation. ar**v preprint ar**v:2003.07311 (2020)

  12. Sichtermann, T., Faron, A., Sijben, R., Teichert, N., Freiherr, J., Wiesmann, M.: Deep learning-based detection of intracranial aneurysms in 3D TOF-MRA. Am. J. Neuroradiol. 40(1), 25–32 (2019)

    Article  Google Scholar 

  13. Stember, J.N., et al.: Convolutional neural networks for the detection and measurement of cerebral aneurysms on magnetic resonance angiography. J. Digit. Imaging 32(5), 808–815 (2019)

    Article  Google Scholar 

  14. Tetteh, G., Efremov, V., Forkert, N.D., Schneider, M., Kirschke, J., et al.: Deepvesselnet: vessel segmentation, centerline prediction, and bifurcation detection in 3-D angiographic volumes. ar**v preprint ar**v:1803.09340 (2018)

  15. Todorov, M.I., et al.: Machine learning analysis of whole mouse brain vasculature. Nat. Methods 17(4), 442–449 (2020)

    Article  Google Scholar 

  16. Ueda, D., et al.: Deep learning for MR angiography: automated detection of cerebral aneurysms. Radiology 290(1), 187–194 (2019)

    Article  Google Scholar 

Download references

Acknowledgement

Suprosanna Shit and Ivan Ezhov are supported by the Translational Brain Imaging Training Network (TRABIT) under the European Union’s ‘Horizon 2020’ research & innovation program (Grant agreement ID: 765148). Johannes C. Paetzold and Suprosanna Shit are supported by the Graduate School of Bioengineering, Technical University of Munich.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Suprosanna Shit .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2021 Springer Nature Switzerland AG

About this paper

Check for updates. Verify currency and authenticity via CrossMark

Cite this paper

Shit, S., Ezhov, I., Paetzold, J.C., Menze, B. (2021). A\(\nu \)-Net: Automatic Detection and Segmentation of Aneurysm. In: Hennemuth, A., Goubergrits, L., Ivantsits, M., Kuhnigk, JM. (eds) Cerebral Aneurysm Detection and Analysis. CADA 2020. Lecture Notes in Computer Science(), vol 12643. Springer, Cham. https://doi.org/10.1007/978-3-030-72862-5_5

Download citation

  • DOI: https://doi.org/10.1007/978-3-030-72862-5_5

  • Published:

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-030-72861-8

  • Online ISBN: 978-3-030-72862-5

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics

Navigation